IslandPathversion 1.0

IslandPath Analysis: Escherichia coli CFT073



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.14 STD DEV: 5.55
Escherichia coli CFT073, complete genome - 0..5231428
5379 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 51.52         190..255      	 +	21	26245918	thrL	c5491	-	Thr operon leader peptide	
2	 46.03         534..911      	 +	125	26245919	-	c0002	-	Hypothetical protein	
3	 52.53         985..3510     	 +	841	26245920	thrA	c0003	-	Aspartokinase I	
4	 55.52        3512..4444     	 +	310	26245921	thrB	c0004	-	Homoserine kinase	
5	 52.76        4445..5731     	 +	428	26245922	thrC	c0005	-	Threonine synthase	
6	 40.67 -1     5799..5948     	 +	49	26245923	-	c0006	-	Hypothetical protein	
7	 53.87        5945..6241     	 +	98	26245924	yaaX	c0007	-	Hypothetical protein yaaX precursor	
8	 53.41        6021..6269     	 -	82	26245925	-	c0008	-	Hypothetical protein	
9	 52.27        6060..6323     	 +	87	26245926	-	c0009	-	Hypothetical protein	
10	 48.65        6301..7077     	 -	258	26245927	yaaA	c0010	-	Protein yaaA	
11	 53.46        7147..8577     	 -	476	26245928	yaaJ	c0011	-	Putative transporter yaaJ	
12	 51.43        8793..9809     	 +	338	26245929	talB	c0012	-	Transaldolase B	
13	 54.15        9921..10511    	 +	196	26245930	mog	c0013	-	Molybdopterin biosynthesis mog protein	
14	 47.83       10535..10672    	 -	45	26245931	-	c0014	-	Hypothetical protein	
15	 52.73       10716..11282    	 -	188	26245932	yaaH	c0015	-	Hypothetical protein yaaH	
16	 50.98       11431..12144    	 -	237	26245933	yaaW	c0016	-	Hypothetical protein yaaW	
17	 47.65       12170..12574    	 -	134	26245934	yaaI	c0017	-	Hypothetical protein yaaI precursor	
18	 50.91       12904..14940    	 -	678	26245935	-	c0018	-	Putative glutamate dehydrogenase	
19	 51.07       12946..14862    	 +	638	26245936	dnaK	c0019	-	Chaperone protein dnaK	
20	 54.82       14951..16081    	 +	376	26245937	dnaJ	c0020	-	Chaperone protein dnaJ	
21	 40.03 -1    16953..17714    	 +	253	26245938	-	c0021	-	Putative conserved protein	
22	 44.77       17698..19227    	 +	509	26245939	-	c0022	-	Hypothetical protein	
23	 43.41 -1    19356..20615    	 +	419	26245940	-	c0023	-	Hypothetical protein	
24	 50.47       20850..22016    	 +	388	26245941	nhaA	c0024	-	Na(+)/H(+) antiporter 1	
25	 47.29       22058..22981    	 +	307	26245942	nhaR	c0025	-	Transcriptional activator protein nhaR	
26	 41.86 -1    22948..23076    	 -	42	26245943	-	c0026	-	Hypothetical protein	
27	 46.21       23077..23340    	 -	87	26245944	rpsT	c0027	-	30S ribosomal protein S20	
28	 48.86       23443..23661    	 +	72	26245945	yaaY	c0028	-	Hypothetical protein yaaY	
29	 52.87       23669..24610    	 +	313	26245946	ribF	c0029	-	Riboflavin biosynthesis protein ribF	
30	 54.77       24653..27469    	 +	938	26245947	ileS	c0030	-	Isoleucyl-tRNA synthetase	
31	 52.32       27469..27963    	 +	164	26245948	lspA	c0031	-	Lipoprotein signal peptidase	
32	 54.44       28071..28520    	 +	149	26245949	slpA	c0032	-	FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase	
33	 55.42       28477..29472    	 +	331	26245950	lytB	c0033	-	IspH protein	
34	 44.54 -1    30475..30840    	 +	121	26245951	-	c0036	-	Hypothetical protein	
35	 53.28       31001..31822    	 +	273	26245952	dapB	c0037	-	Dihydrodipicolinate reductase	
36	 25.60 -2    31864..32031    	 -	55	26245953	-	c0038	-	Hypothetical protein	
37	 38.41 -2    32101..32238    	 +	45	26245954	-	c0039	-	Hypothetical protein	
38	 53.06       32251..33426    	 +	391	26245955	carA	c0040	-	Carbamoyl-phosphate synthase small chain	
39	 56.18 +1    33444..36665    	 +	1073	26245956	carB	c0041	-	Carbamoyl-phosphate synthase large chain	
40	 36.07 -2    36673..36891    	 -	72	26245957	-	c0042	-	Conserved hypothetical protein	
41	 44.31 -1    36821..37321    	 +	166	26245958	caiF	c0043	-	Transcriptional activatory protein caiF	
42	 55.07       37440..38051    	 -	203	26245959	caiE	c0044	-	Carnitine operon protein caiE	
43	 52.80       38036..38929    	 -	297	26245960	caiD	c0045	-	Carnitinyl-CoA dehydratase	
44	 50.80       38930..40498    	 -	522	26245961	caiC	c0046	-	Probable crotonobetaine/carnitine-CoA ligase	
45	 52.46       40556..41773    	 -	405	26245962	caiB	c0047	-	Crotonobetainyl-CoA:carnitine CoA-transferase	
46	 53.46       41901..43043    	 -	380	26245963	caiA	c0048	-	Crotonobetainyl-CoA dehydrogenase	
47	 52.41       43074..44588    	 -	504	26245964	caiT	c0049	-	Probable carnitine transporter	
48	 50.84       44998..45831    	 +	277	26245965	fixA	c0050	-	FixA protein	
49	 54.31       46809..48095    	 +	428	26245966	fixC	c0053	-	FixC protein	
50	 57.29 +1    48092..48379    	 +	95	26245967	fixX	c0054	-	Ferredoxin-like protein	
51	 53.60       48438..49769    	 +	443	26245968	yaaU	c0055	-	Hypothetical metabolite transport protein yaaU	
52	 54.43       49877..50407    	 +	176	26245969	yabF	c0056	-	Putative NAD(P)H oxidoreductase yabF	
53	 55.45       50400..52262    	 +	620	26245970	kefC	c0057	-	Glutathione-regulated potassium-efflux system protein kefC	
54	 52.20       52319..52933    	 +	204	26245971	folA	c0058	-	Dihydrofolate reductase	
55	 48.72       53019..53252    	 +	77	26245972	-	c0059	-	Putative antitoxin of gyrase inhibiting toxin-antitoxin system	
56	 46.03       53255..53569    	 +	104	26245973	-	c0060	-	Putative toxin of gyrase inhibiting toxin-antitoxin system	
57	 55.48       53566..54414    	 -	282	26245974	apaH	c0061	-	Bis(5'-nucleosyl)-tetraphosphatase, symmetrical	
58	 51.98       54385..54738    	 +	117	26245975	-	c0062	-	Hypothetical protein	
59	 52.12       54421..54798    	 -	125	26245976	apaG	c0063	-	ApaG protein	
60	 53.77       54801..55622    	 -	273	26245977	ksgA	c0064	-	Dimethyladenosine transferase	
61	 55.76 +1    55619..56608    	 -	329	26245978	pdxA	c0065	-	4-hydroxythreonine-4-phosphate dehydrogenase	
62	 53.77       56608..57894    	 -	428	26245979	surA	c0066	-	Survival protein surA precursor	
63	 51.72       57947..60301    	 -	784	26245980	imp	c0067	-	Organic solvent tolerance protein precursor	
64	 51.71       60463..61371    	 +	302	26245981	yabH	c0068	-	DnaJ-like protein djlA	
65	 54.24       61489..62148    	 -	219	26245982	yabO	c0069	-	Ribosomal large subunit pseudouridine synthase A	
66	 55.07       62160..65066    	 -	968	26245983	hepA	c0070	-	RNA polymerase associated protein	
67	 55.44       65231..67582    	 -	783	26245984	polB	c0071	-	DNA polymerase II	
68	 46.08       67723..68232    	 +	169	26245985	-	c0072	-	Transposase	
69	 55.60       68369..69064    	 -	231	26245986	araD	c0073	-	L-ribulose-5-phosphate 4-epimerase	
70	 55.22       69349..70851    	 -	500	26245987	araA	c0074	-	L-arabinose isomerase	
71	 58.14 +1    70862..72562    	 -	566	26245988	araB	c0075	-	L-ribulokinase	
72	 52.96       72901..73746    	 +	281	26245989	araC	c0076	-	Arabinose operon Regulatory protein	
73	 47.15       74011..74133    	 +	40	26245990	-	c0077	-	Hypothetical protein	
74	 34.18 -2    74258..74494    	 +	78	26245991	-	c0078	-	Hypothetical protein	
75	 33.51 -2    74536..75108    	 +	190	26245992	-	c0079	-	Hypothetical protein	
76	 31.21 -2    75115..75537    	 +	140	26245993	-	c0080	-	Hypothetical protein	
77	 54.77       75692..76456    	 +	254	26245994	yabI	c0081	-	Hypothetical protein yabI	
78	 56.53 +1    76570..77289    	 -	239	26245995	yabJ	c0082	-	Thiamine transport ATP-binding protein thiQ	
79	 57.98 +1    77252..78862    	 -	536	26245996	yabK	c0083	-	Thiamine transport system permease protein thiP	
80	 51.81       78838..79833    	 -	331	26245997	tbpA	c0084	-	Thiamine-binding periplasmic protein precursor	
81	 55.34       79985..81661    	 -	558	26245998	yabN	c0085	-	Hypothetical protein yabN	
82	 46.27       82026..82535    	 +	169	26245999	-	c0086	-	Transposase	
83	 51.82       82679..83284    	 -	201	26246000	leuD	c0087	-	3-isopropylmalate dehydratase small subunit	
84	 52.69       82730..82915    	 +	61	26246001	-	c0088	-	Hypothetical protein	
85	 55.60       83295..84695    	 -	466	26246002	leuC	c0089	-	3-isopropylmalate dehydratase large subunit	
86	 54.89       84698..85792    	 -	364	26246003	leuB	c0090	-	3-isopropylmalate dehydrogenase	
87	 52.91       85789..87402    	 -	537	26246004	leuA	c0091	-	2-isopropylmalate synthase	
88	 47.13       87451..87537    	 -	28	26246005	leuL	c5492	-	Leu operon leader peptide	
89	 30.08 -2    87996..88118    	 +	40	26246006	-	c0092	-	Hypothetical protein	
90	 46.24       88195..89139    	 +	314	26246007	leuO	c0093	-	Probable activator protein in leuABCD operon	
91	 24.81 -2    89175..89303    	 -	42	26246008	-	c0094	-	Hypothetical protein	
92	 52.67       89367..91181    	 +	604	26246009	ilvI	c0095	-	Acetolactate synthase isozyme III large subunit	
93	 49.62       91154..91675    	 +	173	26246010	ilvH	c0096	-	Acetolactate synthase isozyme III small subunit	
94	 45.98       91687..91773    	 +	28	26246011	fruL	c5493	-	Very hypothetical fruR/shl operon leader peptide	
95	 39.39 -1    91727..91858    	 +	43	26246012	-	c0097	-	Hypothetical protein	
96	 55.12       91855..92859    	 +	334	26246013	fruR	c0098	-	Fructose repressor	
97	 52.73       93425..93919    	 +	164	26246014	yabB	c0099	-	Protein mraZ	
98	 55.31       93921..94862    	 +	313	26246015	yabC	c0100	-	S-adenosyl-methyltransferase mraW	
99	 50.55       94859..95224    	 +	121	26246016	ftsL	c0101	-	Cell division protein ftsL	
100	 53.71       95240..97006    	 +	588	26246017	ftsI	c0102	-	Peptidoglycan synthetase ftsI precursor	

 
 50.14 MEAN 
 
 5.55  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.