IslandPath Analysis: Deinococcus radiodurans chrom 2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.99   STD DEV: 5.06
Deinococcus radiodurans R1 complete chromosome 2 - 0..412348
368 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 62.07         653..1435     	 +	260	15807673	DRA0001	DRA0001	D	chromosome partitioning ATPase, putative, ParA family	
2	 58.50 -1     1432..2313     	 +	293	15807674	DRA0002	DRA0002	K	chromosome partitioning protein, ParB family	
3	 59.49 -1     2418..3881     	 -	487	15807675	DRA0003	DRA0003	C	succinate-semialdehyde dehydrogenase	
4	 66.98        4024..4668     	 +	214	15807676	DRA0004	DRA0004	R	conserved hypothetical protein	
5	 62.93        4719..5897     	 -	392	15807677	DRA0005	DRA0005	E	alcohol dehydrogenase, zinc-containing	
6	 69.52        5894..6700     	 -	268	15807678	DRA0006	DRA0006	-	conserved hypothetical protein	
7	 70.64        6839..7744     	 +	301	15807679	DRA0007	DRA0007	Q	ABC transporter, ATP-binding protein, putative	
8	 66.54        7861..8652     	 +	263	15807680	DRA0008	DRA0008	R	conserved hypothetical protein	
9	 67.85        8809..9819     	 +	336	15807681	DRA0009	DRA0009	T	conserved hypothetical protein	
10	 68.71        9816..10451    	 +	211	15807682	DRA0010	DRA0010	T	DNA-binding response regulator	
11	 72.39 +1    10477..12030    	 -	517	15807683	DRA0011	DRA0011	H	uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase	
12	 69.91       11972..13327    	 -	451	15807684	DRA0012	DRA0012	S	hypothetical protein	
13	 65.78       13432..15123    	 +	563	15807685	DRA0013	DRA0013	P	ferredoxin-nitrite reductase	
14	 66.32       15120..15698    	 +	192	15807686	DRA0014	DRA0014	P	adenylylsulfate kinase	
15	 69.01       15685..16452    	 +	255	15807687	DRA0015	DRA0015	E	phosphoadenosine phosphosulfate reductase	
16	 68.04       16557..17720    	 +	387	15807688	DRA0016	DRA0016	P	sulfate adenylyltransferase	
17	 64.69       17806..18312    	 +	168	15807689	DRA0017	DRA0017	Q	conserved hypothetical protein	
18	 66.60       18472..20045    	 -	524	15808028	-	DRA0018	F	5'-nucleotidase	
19	 70.40       20095..21165    	 +	356	15807690	DRA0019	DRA0019	K	hypothetical protein	
20	 69.44       21138..21677    	 +	179	15807691	DRA0020	DRA0020	H	cobinamide kinase/cobinamide phosphate guanylyltransferase	
21	 58.55 -1    21944..22633    	 -	229	15807692	DRA0021	DRA0021	-	hypothetical protein	
22	 65.32       22683..24833    	 +	716	15807693	DRA0022	DRA0022	-	hypothetical protein	
23	 70.93       24806..25720    	 +	304	15807694	DRA0023	DRA0023	M	conserved hypothetical protein	
24	 70.20       25707..26216    	 +	169	15807695	DRA0024	DRA0024	-	hypothetical protein	
25	 70.33       26710..27255    	 +	181	15808029	-	DRA0025	C	conserved hypothetical protein	
26	 68.23       27700..28083    	 +	127	15807696	DRA0026	DRA0026	-	hypothetical protein	
27	 66.19       28266..29744    	 +	492	15807697	DRA0027	DRA0027	E	conserved hypothetical protein	
28	 61.27 -1    29748..30266    	 +	172	15807698	DRA0028	DRA0028	-	hypothetical protein	
29	 65.42       30295..31659    	 +	454	15807699	DRA0029	DRA0029	E	4-aminobutyrate aminotransferase	
30	 64.71       31738..33318    	 +	526	15807700	DRA0030	DRA0030	C	1-pyrroline-5-carboxylate dehydrogenase, putative	
31	 57.09 -1    33474..34559    	 +	361	15807701	DRA0031	DRA0031	M	glucose-1-phosphate thymidylyltransferase, putative	
32	 61.04 -1    34788..35906    	 +	372	15807702	DRA0032	DRA0032	M	mannose-1-phosphate guanylyltransferase	
33	 62.72       35903..37573    	 +	556	15807703	DRA0033	DRA0033	D	ExoP-related protein	
34	 52.97 -2    37578..39023    	 +	481	15807704	DRA0034	DRA0034	M	UDP-galactose-lipid carrier transferase	
35	 40.46 -2    39026..40288    	 +	420	15807705	DRA0035	DRA0035	R	O-antigen transporter RfbX, putative	
36	 37.19 -2    40439..41656    	 +	405	15807706	DRA0036	DRA0036	-	hypothetical protein	
37	 39.21 -2    41643..42629    	 +	328	15807707	DRA0037	DRA0037	M	glycosyltransferase	
38	 37.01 -2    42632..43447    	 +	271	15807708	DRA0038	DRA0038	R	rhamnosyltransferase, putative	
39	 45.16 -2    43517..44548    	 +	343	15807709	DRA0039	DRA0039	M	mannosyltransferase	
40	 53.89 -2    44545..45648    	 +	367	15807710	DRA0040	DRA0040	M	first mannosyl transferase	
41	 57.72 -1    45652..46746    	 +	364	15807711	DRA0041	DRA0041	M	thymidine diphosphoglucose 4,6-dehydratase	
42	 60.72 -1    46743..47633    	 +	296	15807712	DRA0042	DRA0042	M	glucose-1-phosphate thymidylyltransferase	
43	 58.47 -1    47626..48174    	 +	182	15807713	DRA0043	DRA0043	M	lipopolysaccharide biosynthesis protein, putative	
44	 61.69 -1    48171..48914    	 +	247	15807714	DRA0044	DRA0044	M	dTDP-4-rhamnose reductase-related protein	
45	 60.04 -1    48918..49838    	 -	306	15807715	DRA0045	DRA0045	-	hypothetical protein	
46	 63.98       49835..50989    	 -	384	15807716	DRA0046	DRA0046	-	hypothetical protein	
47	 62.66       51064..52485    	 +	473	15807717	DRA0047	DRA0047	G	phospho-sugar mutase, putative	
48	 63.64       52507..53430    	 -	307	15807718	DRA0048	DRA0048	G	mannose-6-phosphate isomerase, putative	
49	 63.56       53466..53915    	 -	149	15807719	DRA0049	DRA0049	T	response regulator	
50	 69.62       53908..56175    	 -	755	15807720	DRA0050	DRA0050	T	photoreceptor	
51	 67.67       56172..56767    	 -	198	15808030	-	DRA0052m	P	Heme oxygenase	
52	 69.91       56791..58176    	 +	461	15807721	DRA0053	DRA0053	I	acetyl-CoA acetyltransferase	
53	 68.96       58122..59516    	 +	464	15807722	DRA0054	DRA0054	I	succinyl-CoA:3-ketoacid-CoA transferase, putative	
54	 72.20 +1    59503..60405    	 +	300	15807723	DRA0055	DRA0055	G	ribokinase	
55	 59.92 -1    60631..61119    	 -	162	15807724	DRA0056	DRA0056	-	hypothetical protein	
56	 63.85       61138..62877    	 -	579	15807725	DRA0057	DRA0057	T	TerF-related protein	
57	 63.31       62994..63500    	 -	168	15807726	DRA0058	DRA0058	-	hypothetical protein	
58	 65.83       63822..64418    	 -	198	15807727	DRA0059	DRA0059	K	conserved hypothetical protein	
59	 68.64       64486..65499    	 +	337	15807728	DRA0060	DRA0060	R	conserved hypothetical protein	
60	 67.49       65605..67536    	 +	643	15807729	DRA0061	DRA0061	G	drug transport protein, putative	
61	 71.56       67602..68234    	 +	210	15807730	DRA0062	DRA0062	K	acetyltransferase, putative	
62	 72.27 +1    68254..69306    	 -	350	15807731	DRA0063	DRA0063	S	conserved hypothetical protein	
63	 71.13       69403..70857    	 -	484	15807732	DRA0064	DRA0064	O	serine protease, subtilase family	
64	 64.25       71040..71453    	 +	137	15807733	DRA0065	DRA0065	L	DNA-binding protein HB	
65	 72.37 +1    71520..72641    	 -	373	15807734	DRA0066	DRA0066	G	N-acetylglucosamine-6-phosphate deacetylase	
66	 63.33       72656..73285    	 -	209	15807735	DRA0067	DRA0067	I	CoA transferase, subunit B	
67	 63.36       73285..73980    	 -	231	15807736	DRA0068	DRA0068	I	CoA transferase, subunit A	
68	 68.73       74064..75563    	 +	499	15807737	DRA0069	DRA0069	J	cleavage and polyadenylation specificity factor-related protein	
69	 71.88       75622..76293    	 +	223	15807738	DRA0070	DRA0070	-	hypothetical protein	
70	 68.78       76304..76681    	 -	125	15807739	DRA0071	DRA0071	K	transcriptional repressor SmtB	
71	 71.01       76678..76953    	 -	91	15807740	DRA0072	DRA0072	O	hypothetical protein	
72	 71.19       76946..79132    	 -	728	15807741	DRA0073	DRA0073	P	cation-transporting P-type ATPase	
73	 61.69 -1    79518..80240    	 -	240	15807742	DRA0074	DRA0074	-	hypothetical protein	
74	 65.73       80554..82683    	 +	709	15807743	DRA0075	DRA0075	L	transposase, putative	
75	 67.43       82680..83462    	 +	260	15807744	DRA0076	DRA0076	R	hypothetical protein	
76	 65.27       83459..83887    	 +	142	15807745	DRA0077	DRA0077	-	hypothetical protein	
77	 67.81       83887..84237    	 +	116	15807746	DRA0078	DRA0078	K	hypothetical protein	
78	 63.57       84218..84637    	 +	139	15807747	DRA0079	DRA0079	-	hypothetical protein	
79	 72.76 +1    84634..84912    	 +	92	15807748	DRA0080	DRA0080	-	hypothetical protein	
80	 72.08 +1    84909..85259    	 +	116	15807749	DRA0081	DRA0081	-	hypothetical protein	
81	 68.82       85369..85926    	 +	185	15807750	DRA0082	DRA0082	-	hypothetical protein	
82	 65.64       85939..86328    	 +	129	15807751	DRA0083	DRA0083	-	hypothetical protein	
83	 66.20       86321..86533    	 +	70	15807752	DRA0084	DRA0084	-	hypothetical protein	
84	 65.80       86729..86959    	 +	76	15807753	DRA0085	DRA0085	-	hypothetical protein	
85	 67.61       86956..87486    	 +	176	15807754	DRA0086	DRA0086	-	hypothetical protein	
86	 63.87       87486..87986    	 +	166	15807755	DRA0087	DRA0087	-	hypothetical protein	
87	 61.64 -1    88231..88608    	 -	125	15807756	DRA0088	DRA0088	-	hypothetical protein	
88	 68.79       88680..88961    	 +	93	15807757	DRA0089	DRA0089	-	hypothetical protein	
89	 58.45 -1    88888..89325    	 -	145	15807758	DRA0090	DRA0090	-	hypothetical protein	
90	 65.22       89324..89668    	 +	114	15807759	DRA0091	DRA0091	-	hypothetical protein	
91	 65.36       89694..89999    	 +	101	15807760	DRA0092	DRA0092	-	hypothetical protein	
92	 62.59       90010..90549    	 +	179	15807761	DRA0093	DRA0093	-	hypothetical protein	
93	 64.56       90546..91922    	 +	458	15807762	DRA0094	DRA0094	-	conserved hypothetical protein	
94	 62.60       91974..92366    	 +	130	15807763	DRA0095	DRA0095	-	hypothetical protein	
95	 66.88       92338..93270    	 +	310	15807764	DRA0096	DRA0096	-	hypothetical protein	
96	 69.69       93267..94028    	 +	253	15807765	DRA0097	DRA0097	S	head morphogenesis protein, putative	
97	 54.85 -2    94038..94367    	 +	109	15807766	DRA0098	DRA0098	-	hypothetical protein	
98	 62.81       95260..96114    	 +	284	15807767	DRA0099	DRA0099	-	hypothetical protein	
99	 61.90 -1    96178..96429    	 +	83	15807768	DRA0100	DRA0100	-	hypothetical protein	
100	 69.67       96429..96794    	 +	121	15807769	DRA0101	DRA0101	-	hypothetical protein	

 
 66.99 MEAN 
 
 5.06  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.