IslandPath Analysis: Deinococcus radiodurans chrom 1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.25   STD DEV: 4.30
Deinococcus radiodurans R1 complete chromosome 1 - 0..2648638
2629 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 63.79           1..1182     	 -	393	15805043	DR0001	DR0001	L	DNA polymerase III, beta subunit	
2	 64.47        1904..3268     	 -	454	15805044	DR0002	DR0002	L	chromosomal replication initiator protein	
3	 66.78        3412..4287     	 +	291	15805045	DR0003	DR0003	-	hypothetical protein	
4	 67.90        4378..5430     	 +	350	15805046	DR0004	DR0004	L	MutT/nudix family protein	
5	 69.91        5438..6115     	 +	225	15805047	DR0005	DR0005	K	conserved hypothetical protein	
6	 67.05        6162..6944     	 -	260	15805048	DR0006	DR0006	R	conserved hypothetical protein	
7	 71.09        6986..7822     	 +	278	15805049	DR0007	DR0007	S	conserved hypothetical protein	
8	 71.76 +1     7819..8859     	 +	346	15805050	DR0008	DR0008	-	hypothetical protein	
9	 68.14        8925..10283    	 +	452	15805051	DR0009	DR0009	S	conserved hypothetical protein	
10	 59.77 -1    10413..11615    	 +	400	15807617	-	DR0010	L	putative transposase	
11	 65.99       11855..12736    	 -	293	15805052	DR0011	DR0011	M	conserved hypothetical protein	
12	 68.51       13333..14199    	 -	288	15805053	DR0012	DR0012	K	chromosome partitioning protein	
13	 69.70       14183..15073    	 -	296	15805054	DR0013	DR0013	D	chromosome partitioning ATPase Soj	
14	 69.29       15101..15862    	 -	253	15805055	DR0014	DR0014	M	gidB protein	
15	 65.27       15859..16215    	 -	118	15805056	DR0015	DR0015	-	hypothetical protein	
16	 72.06 +1    16307..17047    	 -	246	15805057	DR0016	DR0016	H	conserved hypothetical protein	
17	 66.91       17147..17557    	 -	136	15805058	DR0017	DR0017	S	conserved hypothetical protein	
18	 68.77       17568..18185    	 -	205	15805059	DR0018	DR0018	-	hypothetical protein	
19	 69.39       18182..19063    	 -	293	15805060	DR0019	DR0019	-	hypothetical protein	
20	 72.15 +1    19258..20643    	 +	461	15805061	DR0020	DR0020	K	ribonuclease II family protein	
21	 65.17       20768..21034    	 +	88	15805062	DR0021	DR0021	-	hypothetical protein	
22	 61.33 -1    21162..21761    	 -	199	15805063	DR0022	DR0022	-	conserved hypothetical protein	
23	 69.48       22233..22766    	 +	177	15805064	DR0023	DR0023	F	phosphoribosylaminoimidazole carboxylase, catalytic subunit	
24	 70.53       22763..23875    	 +	370	15805065	DR0024	DR0024	F	phosphoribosylaminoimidazole carboxylase, ATPase subunit	
25	 63.42       23983..25182    	 +	399	15805066	DR0025	DR0025	S	conserved hypothetical protein	
26	 62.72 -1    25273..26082    	 +	269	15805067	DR0026	DR0026	Q	methyltransferase, putative	
27	 66.22       26166..27968    	 -	600	15805068	DR0027	DR0027	D	gidA protein	
28	 66.97       28040..29674    	 +	544	15805069	DR0028	DR0028	E	aminotransferase, putative	
29	 66.40       29796..30941    	 +	381	15805070	DR0029	DR0029	C	2-oxo acid dehydrogenase, E1 component, alpha subunit	
30	 66.47       30938..31972    	 +	344	15805071	DR0030	DR0030	C	2-oxo acid dehydrogenase, E1 component, beta subunit	
31	 66.26       32002..32244    	 +	80	15805072	DR0031	DR0031	-	hypothetical protein	
32	 67.24       32248..33825    	 +	525	15805073	DR0032	DR0032	C	2-oxo acid dehydrogenase, E2 component	
33	 65.40       33903..34376    	 -	157	15805074	DR0033	DR0033	J	conserved hypothetical protein	
34	 65.52       34348..34695    	 +	115	15805075	DR0034	DR0034	-	hypothetical protein	
35	 66.01       34829..36046    	 +	405	15805076	DR0035	DR0035	F	adenylosuccinate synthase	
36	 65.59       36181..36831    	 +	216	15805077	DR0036	DR0036	H	GTP cyclohydrolase I	
37	 64.85       36859..37464    	 +	201	15805078	DR0037	DR0037	-	hypothetical protein	
38	 66.13       37446..38756    	 +	436	15805079	DR0038	DR0038	E	serine hydroxymethyltransferase	
39	 71.34       38823..39977    	 +	384	15805080	DR0039	DR0039	T	conserved hypothetical protein	
40	 68.13       39999..40475    	 -	158	15805081	DR0040	DR0040	-	hypothetical protein	
41	 70.29       40458..41036    	 +	192	15805082	DR0041	DR0041	-	hypothetical protein	
42	 66.02       41050..41823    	 +	257	15805083	DR0042	DR0042	-	hypothetical protein	
43	 73.54 +1    41990..42775    	 -	261	15805084	DR0043	DR0043	S	hypothetical protein	
44	 68.97       42772..43899    	 -	375	15805085	DR0044	DR0044	H	N-acylamino acid racemase	
45	 71.85 +1    43942..44520    	 +	192	15805086	DR0045	DR0045	S	hypothetical protein	
46	 72.58 +1    44596..45102    	 +	168	15805087	DR0046	DR0046	-	conserved hypothetical protein	
47	 67.17       45124..45321    	 +	65	15805088	DR0047	DR0047	-	hypothetical protein	
48	 67.06       45318..46082    	 +	254	15805089	DR0048	DR0048	S	conserved hypothetical protein	
49	 69.36       46123..47349    	 +	408	15805090	DR0049	DR0049	R	conserved hypothetical protein	
50	 67.82       47370..47891    	 -	173	15805091	DR0050	DR0050	S	hypothetical protein	
51	 64.15       47912..48268    	 -	118	15805092	DR0051	DR0051	S	HesB/YadR/YfhF family protein	
52	 69.44       48296..49051    	 -	251	15805093	DR0052	DR0052	S	hypothetical protein	
53	 67.07       49054..49548    	 -	164	15805094	DR0053	DR0053	S	conserved hypothetical protein	
54	 67.26       49657..49992    	 +	111	15805095	DR0054	DR0054	S	conserved hypothetical protein	
55	 71.92 +1    49989..50939    	 +	316	15805096	DR0055	DR0055	K	repressor protein, putative	
56	 70.28       51060..52361    	 +	433	15805097	DR0056	DR0056	Q	benzoate membrane transport protein, putative	
57	 69.41       52370..52624    	 -	84	15805098	DR0057	DR0057	O	conserved hypothetical protein	
58	 67.45       52646..54421    	 -	591	15805099	DR0058	DR0058	T	serine/threonine protein kinase, putative	
59	 62.46 -1    54831..55115    	 +	94	15805100	DR0059	DR0059	-	hypothetical protein	
60	 73.66 +1    55152..55580    	 +	142	15805101	DR0060	DR0060	-	hypothetical protein	
61	 74.81 +1    55573..57009    	 +	478	15805102	DR0061	DR0061	-	hypothetical protein	
62	 72.34 +1    57231..58217    	 -	328	15805103	DR0062	DR0062	E	ABC transporter, ATP-binding protein	
63	 71.09       58272..59153    	 -	293	15805104	DR0063	DR0063	S	hypothetical protein	
64	 66.67       59243..60433    	 -	396	15805105	DR0064	DR0064	H	conserved hypothetical protein	
65	 69.30       60568..63186    	 +	872	15805106	DR0065	DR0065	R	ATP-dependent helicase, putative	
66	 70.58       63356..64147    	 -	263	15805107	DR0066	DR0066	J	aminoglycoside 3`-phosphotransferase	
67	 74.84 +1    64184..65113    	 +	309	15805108	DR0067	DR0067	-	hypothetical protein	
68	 65.33       65110..65484    	 +	124	15805109	DR0068	DR0068	-	hypothetical protein	
69	 66.39       65586..65948    	 +	120	15805110	DR0069	DR0069	-	hypothetical protein	
70	 66.67       66004..66603    	 +	199	15805111	DR0070	DR0070	-	hypothetical protein	
71	 67.06       66759..68792    	 -	677	15805112	DR0071	DR0071	O	peptidyl-prolyl cis-trans isomerse, putative, PpiC family	
72	 71.30       69032..69571    	 +	179	15805113	DR0072	DR0072	-	hypothetical protein	
73	 68.79       69707..71875    	 -	722	15805114	DR0073	DR0073	C	phosphate acetyltransferase	
74	 68.86       71920..72513    	 -	197	15805115	DR0074	DR0074	K	transcriptional regulator, TetR family	
75	 67.82       72681..77084    	 +	1467	15805116	DR0075	DR0075	S	conserved hypothetical protein	
76	 73.63 +1    77159..78364    	 +	401	15805117	DR0076	DR0076	H	molybdopterin biosynthesis MoeA	
77	 67.27       78380..79201    	 -	273	15805118	DR0077	DR0077	E	shikimate 5-dehydrogenase, putative	
78	 66.88       79205..80125    	 -	306	15805119	DR0078	DR0078	E	N-acetyl-gamma-glutamyl-phosphate reductase	
79	 64.73       80122..80637    	 -	171	15805120	DR0079	DR0079	L	MutT/nudix family protein	
80	 65.35       80645..81706    	 -	353	15805121	DR0080	DR0080	E	ornithine carbamoyltransferase	
81	 65.69       81769..82482    	 -	237	15805122	DR0081	DR0081	S	conserved hypothetical protein	
82	 67.74       82517..82981    	 -	154	15805123	DR0082	DR0082	-	hypothetical protein	
83	 63.96       83069..84322    	 -	417	15805124	DR0083	DR0083	C	2-oxoglutarate dehydrogenase, dihydrolipoamide succinyltransferase E2 component	
84	 63.25       86474..87790    	 -	438	15805125	DR0084	DR0084	R	GTP-binding protein Obg	
85	 61.96 -1    87904..88179    	 -	91	15805126	DR0085	DR0085	J	ribosomal protein L27	
86	 61.18 -1    88194..88703    	 -	169	15805127	DR0086	DR0086	J	ribosomal protein L21	
87	 65.19       88873..89346    	 -	157	15805128	DR0087	DR0087	K	conserved hypothetical protein	
88	 70.80       89343..90140    	 -	265	15805129	DR0088	DR0088	Q	oxidoreductase, short-chain dehydrogenase/reductase family	
89	 72.79 +1    90184..91260    	 -	358	15805130	DR0089	DR0089	M	conserved hypothetical protein	
90	 75.82 +1    91257..91955    	 -	232	15805131	DR0090	DR0090	I	conserved hypothetical protein	
91	 72.42 +1    91945..92883    	 -	312	15805132	DR0091	DR0091	S	conserved hypothetical protein	
92	 69.93       92880..93155    	 -	91	15805133	DR0092	DR0092	L	MutT/nudix family protein	
93	 67.64       93152..94687    	 -	511	15805134	DR0093	DR0093	Q	phytoene dehydrogenase, putative	
94	 58.06 -2    94950..95495    	 +	181	15805135	DR0094	DR0094	-	hypothetical protein	
95	 70.83       95577..97403    	 -	608	15805136	DR0095	DR0095	Q	ABC transporter, ATP-binding protein	
96	 70.49       97501..99252    	 -	583	15805137	DR0096	DR0096	Q	ABC transporter, ATP-binding protein, MsbA family	
97	 68.42       99317..99886    	 -	189	15805138	DR0097	DR0097	-	conserved hypothetical protein	
98	 61.49 -1   100030..100338   	 +	102	15805139	DR0098	DR0098	J	ribosomal protein S6	
99	 60.19 -1   100371..100802   	 +	143	15805140	DR0099	DR0099	L	single-stranded DNA-binding protein	
100	 63.11      100829..101361   	 +	177	15807618	ssb	DR0100	L	single-stranded DNA-binding protein	

 
 67.25 MEAN 
 
 4.30  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.