IslandPath Analysis: Chlamydia trachomatis D



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.53   STD DEV: 2.33
Chlamydia trachomatis, complete genome - 0..1042519
895 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 46.68 +2     -599..1176  	 +	591	15604718	CT875	CT875	-	hypothetical protein	
2	 41.76        1321..1593     	 -	90	15604719	CT001	CT001	S	hypothetical protein	
3	 39.27        1794..2096     	 +	100	15604720	gatC	CT002	J	Glu-tRNA Gln Amidotransferase (C subunit)	
4	 43.22        2108..3583     	 +	491	15604721	gatA	CT003	J	Glu-tRNA Gln Amidotransferase (A subunit)	
5	 43.15        3585..5051     	 +	488	15604722	gatB	CT004	J	(Pet112) Glu-tRNA Gln Amidotransferase (B Subunit)	
6	 46.43 +2     5150..6241     	 -	363	15604723	CT005	CT005	-	hypothetical protein	
7	 45.09 +1     6369..6938     	 -	189	15604724	CT006	CT006	-	hypothetical protein	
8	 40.38        7251..8201     	 +	316	15604725	CT007	CT007	-	hypothetical protein	
9	 42.30        8217..9119     	 -	300	15604726	rnhB_1	CT008	L	Ribonuclease HII	
10	 40.28        9373..9804     	 +	143	15604727	yfgA	CT009	S	HTH Transcriptional Regulator	
11	 41.30        9791..11158    	 -	455	15604728	htrB	CT010	N	Acyltransferase	
12	 37.47 -1    11290..12546    	 -	418	15604729	CT011	CT011	-	hypothetical protein	
13	 42.52       12543..13337    	 -	264	15604730	ybbP	CT012	S	hypothetical protein	
14	 40.64       13612..14952    	 +	446	15604731	cydA	CT013	C	Cytochrome Oxidase Subunit I	
15	 40.30       14964..16025    	 +	353	15604732	cydB	CT014	C	Cytochrome Oxidase Subunit II	
16	 40.31       16123..17427    	 -	434	15604733	phoH	CT015	T	ATPase	
17	 40.47       17636..18364    	 +	242	15604734	CT016	CT016	-	hypothetical protein	
18	 41.01       18550..19851    	 +	433	15604735	CT017	CT017	-	hypothetical protein	
19	 44.30 +1    19913..20386    	 -	157	15604736	CT018	CT018	-	hypothetical protein	
20	 41.95       21432..24542    	 +	1036	15604737	ileS	CT019	J	Isoleucyl-tRNA Synthetase	
21	 40.38       24601..26487    	 -	628	15604738	lepB	CT020	N	Signal Peptidase I	
22	 39.65       26673..27416    	 -	247	15604739	CT021	CT021	-	hypothetical protein	
23	 41.90       27492..27818    	 +	108	15604740	rl31	CT022	J	L31 Ribosomal Protein	
24	 45.09 +1    28006..29085    	 +	359	15604741	pfrA	CT023	J	Peptide Chain Releasing Factor (RF-1)	
25	 43.18       29069..29941    	 +	290	15604742	CT024	CT024	J	N6-adenine-specific DNA methylase	
26	 43.36       29938..31284    	 +	448	15604743	ffh	CT025	N	Signal Recognition Particle GTPase	
27	 42.74       31275..31625    	 +	116	15604744	rs16	CT026	J	S16 Ribosomal Protein	
28	 44.10 +1    31641..32699    	 +	352	15604745	trmD	CT027	J	tRNA (guanine N-1) Methyltransferase	
29	 45.90 +1    32725..33090    	 +	121	15604746	rl19	CT028	J	L19 Ribosomal Protein	
30	 44.04 +1    33154..33807    	 +	217	15604747	rnhB_2	CT029	L	Ribonuclease HII	
31	 42.07       33798..34415    	 +	205	15604748	gmk	CT030	F	GMP Kinase	
32	 40.59       34408..34710    	 +	100	15604749	CT031	CT031	-	hypothetical protein	
33	 41.44       34710..36362    	 +	550	15604750	metG	CT032	J	Methionyl-tRNA Synthetase	
34	 40.29       36502..38742    	 -	746	15604751	recD_1	CT033	L	Exodeoxyribonuclease V, Alpha	
35	 42.79       38990..40015    	 -	341	15604752	ytfF	CT034	G	Cationic Amino Acid Transporter	
36	 44.96 +1    40354..41127    	 +	257	15604753	CT035	CT035	-	Biotin Protein Ligase	
37	 41.17       41092..42303    	 -	403	15604754	CT036	CT036	-	hypothetical protein	
38	 38.94 -1    42310..42666    	 -	118	15604755	CT037	CT037	-	hypothetical protein	
39	 39.03 -1    42865..43215    	 -	116	15604756	CT038	CT038	-	hypothetical protein	
40	 41.36       43231..43803    	 -	190	15604757	dcd	CT039	F	Deoxycytidine triphosphate deaminase family protein	
41	 35.95 -2    43891..44043    	 +	50	15604758	CT039.1	CT039.1	-	hypothetical protein	
42	 43.18       44085..45089    	 +	334	15604759	ruvB	CT040	L	Holliday Junction Helicase	
43	 42.44       45091..45903    	 +	270	15604760	CT041	CT041	-	hypothetical protein	
44	 42.13       45965..47965    	 -	666	15604761	glgX	CT042	G	Glycogen Hydrolase (debranching)	
45	 45.83 +1    48083..48586    	 -	167	15604762	CT043	CT043	-	hypothetical protein	
46	 40.30       49052..49525    	 +	157	15604763	ssb	CT044	L	SS DNA Binding Protein	
47	 41.80       49866..51365    	 +	499	15604764	pepA	CT045	E	Leucyl Aminopeptidase A	
48	 41.34       51504..52115    	 +	203	15604765	hctB	CT046	-	Histone-like Protein 2	
49	 38.94 -1    52270..53214    	 +	314	15604766	CT047	CT047	L	hypothetical protein	
50	 42.44       53309..54022    	 +	237	15604767	yraL	CT048	R	SAM-dependent methyltransferase	
51	 45.55 +1    54113..55585    	 +	490	15604768	CT049	CT049	-	hypothetical protein	
52	 41.96       55644..57254    	 -	536	15604769	CT050	CT050	-	hypothetical protein	
53	 41.01       57358..58920    	 -	520	15604770	CT051	CT051	-	hypothetical protein	
54	 41.34       58974..60110    	 -	378	15604771	hemN_1	CT052	H	Coproporphyrinogen III Oxidase	
55	 44.74 +1    60100..60546    	 -	148	15604772	CT053	CT053	-	hypothetical protein	
56	 42.02       60878..63595    	 +	905	15604773	sucA	CT054	C	Oxoglutarate Dehydrogenase	
57	 42.44       63599..64696    	 +	365	15604774	sucB_1	CT055	C	Dihydrolipoamide Succinyltransferase	
58	 43.72       64725..65456    	 -	243	15604775	CT056	CT056	S	hypothetical protein	
59	 42.90       65465..67273    	 -	602	15604776	gcpE	CT057	M	hypothetical protein	
60	 44.47 +1    67425..68528    	 -	367	15604777	CT058	CT058	-	hypothetical protein	
61	 45.65 +1    68608..68883    	 -	91	15604778	fer	CT059	C	Ferredoxin	
62	 41.36       69065..70882    	 +	605	15604779	flhA	CT060	N	Flagellar Secretion Protein	
63	 41.60       70990..71751    	 +	253	15604780	fliA	CT061	K	Sigma-28/WhiG Family	
64	 41.32       71910..73148    	 +	412	15604781	tyrS	CT062	J	tyrosyl tRNA Synthetase	
65	 43.17       73158..74600    	 +	480	15604782	gnd	CT063	G	6-Phosphogluconate Dehydrogenase	
66	 40.41       74661..76469    	 -	602	15604783	lepA	CT064	N	GTPase	
67	 43.23       76655..78241    	 -	528	15604784	CT065	CT065	C	ADP/ATP Translocase	
68	 40.67       78592..79068    	 -	158	15604785	CT066	CT066	-	hypothetical protein	
69	 41.28       79726..80706    	 +	326	15604786	ytgA	CT067	P	Solute Protein Binding Family	
70	 41.54       80699..81478    	 +	259	15604787	ytgB_1	CT068	P	rRNA methylase	
71	 38.64 -1    81479..82834    	 +	451	15604788	ytgC	CT069	K	Integral Membrane Protein	
72	 37.30 -1    82824..83780    	 +	318	15604789	ytgD	CT070	P	Integral Membrane Protein	
73	 41.58       83807..84946    	 +	379	15604790	yaeM	CT071	I	hypothetical protein	
74	 42.80       85142..87001    	 +	619	15604791	yaeL	CT072	M	Metalloprotease	
75	 39.88       86948..87925    	 -	325	15604792	CT073	CT073	-	predicted OMP [leader (19) peptide]	
76	 40.35       88083..89180    	 -	365	15604793	recF	CT074	L	ABC superfamily ATPase	
77	 40.61       89180..90430    	 -	416	15604794	dnaN	CT075	L	DNA Pol III (beta chain)	
78	 41.67       90560..91015    	 +	151	15604795	smpB	CT076	O	Small Protein B	
79	 44.16 +1    90993..91943    	 -	316	15604796	yojL	CT077	H	hypothetical protein	
80	 44.10 +1    91913..92776    	 -	287	15604797	folD	CT078	H	Methylene Tetrahydrofolate Dehydrogenase	
81	 44.14 +1    92894..93337    	 -	147	15604798	CT079	CT079	-	hypothetical protein	
82	 39.46       93614..93907    	 +	97	15604799	ltuB	CT080	-	hypothetical protein	
83	 37.37 -1    93964..94260    	 +	98	15604800	CT081	CT081	-	CHLTR T2 Protein	
84	 43.26       94270..95952    	 +	560	15604801	CT082	CT082	-	hypothetical protein	
85	 41.20       95949..96431    	 +	160	15604802	CT083	CT083	-	hypothetical protein	
86	 38.58 -1    96445..97530    	 -	361	15604803	CT084	CT084	I	Phopholipase D Superfamily [leader (33) peptide}	
87	 42.76       97700..99439    	 -	579	15604804	CT085	CT085	H	hypothetical protein	
88	 40.37       99565..99834    	 -	89	15604805	rl28	CT086	J	L28 Ribosomal Protein	
89	 41.86       99983..101566   	 -	527	15604806	malQ	CT087	G	4-alpha glucanotransferase	
90	 38.32 -1   101570..102010   	 -	146	15604807	sycE	CT088	-	Secretion Chaperone	
91	 43.13      102048..103313   	 -	421	15604808	lcrE	CT089	-	Low Calcium Response E	
92	 42.41      103331..105457   	 -	708	15604809	lcrD	CT090	N	Low Calcium Response D	
93	 39.15 -1   105457..106539   	 -	360	15604810	yscU	CT091	N	Yop proteins translocation protein U	
94	 41.60      106796..107896   	 +	366	15604811	ychF	CT092	R	GTP Binding Protein	
95	 41.61      107905..108810   	 -	301	15604812	ribF	CT093	H	Riboflavin kinase/FAD Synthase	
96	 41.60      108767..109492   	 -	241	15604813	truB	CT094	J	tRNA Pseudouridine Synthase	
97	 37.90 -1   109530..109901   	 -	123	15604814	rbfA	CT095	J	Ribosome Binding Factor A	
98	 42.74      109908..112586   	 -	892	15604815	infB	CT096	J	Initiation Factor-2	
99	 40.23      112543..113847   	 -	434	15604816	nusA	CT097	K	Transcription antitermination factor	
100	 40.41      113965..115674   	 -	569	15604817	rs1	CT098	J	S1 Ribosomal Protein	

 
 41.53 MEAN 
 
 2.33  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.