IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydia pneumoniae AR39 Main Chromosome - 0..1229858
1112 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 39.24         201..1199     	 +	332	16752297	-	CP0001	H	delta-aminolevulinic acid dehydratase	
2	 38.89        1220..2623     	 -	467	16752298	-	CP0002	C	NADH:ubiquinone oxidoreductase, alpha subunit, putative	
3	 33.57 -2     2694..3122     	 -	142	16752299	-	CP0003	D	conserved hypothetical protein	
4	 39.51        3235..5403     	 +	722	16752300	-	CP0004	S	transcription elongation protein, GreA/GreB family	
5	 38.22        5537..6724     	 +	395	16752301	-	CP0005	E	amino acid biosynthesis aminotransferase, class I	
6	 39.74        6714..7727     	 +	337	16752302	-	CP0006	M	conserved hypothetical protein	
7	 37.81        7687..10839    	 -	1050	16752303	-	CP0007	L	exodeoxyribonuclease V, beta chain, putative	
8	 38.15       10826..13900    	 -	1024	16752304	-	CP0008	L	exodeoxyribonuclease V, gamma subunit, putative	
9	 39.94       13887..15596    	 +	569	16752305	-	CP0009	G	conserved hypothetical protein	
10	 35.72 -1    15917..16585    	 +	222	16752306	-	CP0011	F	uridine kinase	
11	 39.08       16667..17641    	 -	324	16752307	-	CP0012	R	conserved hypothetical protein	
12	 40.48       17858..18487    	 +	209	16752308	-	CP0013	J	ribosomal protein S4	
13	 40.59       18606..19487    	 -	293	16752309	-	CP0014	L	endonuclease IV	
14	 36.16 -1    19822..19998    	 -	58	16752310	-	CP0015	-	hypothetical protein	
15	 41.00       19982..21625    	 +	547	16752311	-	CP0016	R	conserved hypothetical protein	
16	 39.24       21728..22996    	 +	422	16753066	-	CP0017	-	conserved hypothetical protein	
17	 44.84 +1    23108..25063    	 +	651	16752312	-	CP0018	-	conserved hypothetical protein	
18	 39.44       25390..28008    	 -	872	16752313	-	CP0019	-	conserved hypothetical protein	
19	 41.37       28270..30708    	 +	812	16752314	-	CP0020	-	conserved hypothetical protein	
20	 42.11       30774..31001    	 +	75	16752315	-	CP0021	-	conserved hypothetical protein	
21	 41.58       31058..31882    	 +	274	16752316	-	CP0022	-	hypothetical protein	
22	 40.94       31879..32601    	 -	240	16752317	-	CP0023	R	ABC transporter, ATP-binding protein	
23	 38.45       32608..33096    	 -	162	16752318	-	CP0024	-	conserved hypothetical protein	
24	 44.73 +1    33093..33908    	 -	271	16752319	-	CP0025	M	2-dehydro-3-deoxyphophooctonate aldolase	
25	 39.24       34346..34582    	 -	78	16752320	-	CP0026	R	conserved hypothetical protein	
26	 41.41       34692..35669    	 -	325	16752321	-	CP0027	J	ribosomal large subunit pseudouridine synthase D	
27	 41.12       35956..36276    	 -	106	16752322	-	CP0028	-	conserved hypothetical protein	
28	 41.67       36276..36575    	 -	99	16752323	-	CP0029	-	conserved hypothetical protein	
29	 40.99       36680..38116    	 -	478	16752324	-	CP0030	L	DNA gyrase, subunit A	
30	 38.09       38120..39928    	 -	602	16752325	-	CP0031	L	DNA gyrase, subunit B	
31	 39.41       40478..41497    	 +	339	16752326	-	CP0032	H	glutamyl-tRNA reductase, putative	
32	 39.69       41864..42256    	 +	130	16752327	-	CP0033	-	conserved hypothetical protein	
33	 39.99       42270..44807    	 +	845	16752328	-	CP0034	T	conserved hypothetical protein	
34	 38.15       44854..45102    	 +	82	16752329	-	CP0035	-	conserved hypothetical protein	
35	 39.61       45124..45378    	 +	84	16752330	-	CP0036	-	conserved hypothetical protein	
36	 38.89       45397..45846    	 +	149	16752331	-	CP0037	-	conserved hypothetical protein	
37	 42.22       45880..46554    	 +	224	16752332	-	CP0038	-	conserved hypothetical protein	
38	 45.82 +1    46556..47884    	 +	442	16752333	-	CP0039	N	type III secretion cytoplasmic ATPase SctN	
39	 39.25       47902..48408    	 +	168	16752334	-	CP0040	-	conserved hypothetical protein	
40	 37.60       48412..49254    	 +	280	16752335	-	CP0041	-	conserved hypothetical protein	
41	 42.11       49264..50379    	 +	371	16752336	-	CP0042	N	type III secretion translocase SctQ	
42	 40.23       50395..51903    	 +	502	16752337	-	CP0043	T	serine/threonine-protein kinase	
43	 41.41       51900..54659    	 +	919	16752338	-	CP0044	N	type III secretion protein SctC	
44	 37.70       54910..55986    	 -	358	16752339	-	CP0045	-	arginine kinase-related protein	
45	 40.50       55973..56488    	 -	171	16752340	-	CP0046	-	conserved hypothetical protein	
46	 38.86       56861..57403    	 -	180	16752341	-	CP0047	J	ribosome recycling factor	
47	 39.89       57381..58127    	 -	248	16752342	-	CP0048	F	uridylate kinase	
48	 39.81       58135..58983    	 -	282	16752343	-	CP0049	J	translation elongation factor Ts	
49	 38.13       58983..59816    	 -	277	16752344	-	CP0050	J	ribosomal protein S2	
50	 42.82       60200..61369    	 -	389	16752345	-	CP0051	-	major outer membrane protein, porin	
51	 40.60       61985..65257    	 +	1090	16752346	-	CP0052	M	penicillin-binding protein, putative	
52	 40.59       65328..66347    	 +	339	16752347	-	CP0053	R	type III secretion chaperone, putative	
53	 41.92       66672..68126    	 +	484	16752348	-	CP0054	R	conserved hypothetical protein	
54	 40.86       68132..68902    	 +	256	16752349	-	CP0055	R	ABC transporter, ATP-binding protein	
55	 41.27       68904..70151    	 +	415	16752350	-	CP0056	R	conserved hypothetical protein	
56	 42.51       70180..71400    	 +	406	16752351	-	CP0057	E	aminotransferase, class V	
57	 40.58       71444..72202    	 -	252	16752352	-	CP0058	G	conserved hypothetical protein	
58	 40.37       72367..73020    	 -	217	16752353	-	CP0059	-	conserved hypothetical protein	
59	 40.74       73223..73411    	 +	62	16752354	-	CP0060	-	hypothetical protein	
60	 31.58 -2    73364..73477    	 -	37	16752355	-	CP0061	-	hypothetical protein	
61	 43.09       73546..74406    	 +	286	16752356	-	CP0062	K	chromosome partioning protein, ParB family	
62	 39.71       74387..74590    	 -	67	16752357	-	CP0063	-	hypothetical protein	
63	 41.23       74662..75636    	 -	324	16752358	-	CP0064	E	peptide ABC transporter, ATP-binding protein	
64	 43.90       75626..76600    	 -	324	16752359	-	CP0065	E	peptide ABC transporter, ATP-binding protein	
65	 36.89 -1    76655..77329    	 +	224	16752360	-	CP0066	P	conserved hypothetical protein	
66	 42.86       77336..78616    	 +	426	16752361	-	CP0067	P	phosphate permease family protein	
67	 44.33 +1    78654..79862    	 +	402	16752362	-	CP0068	G	phosphoglycerate kinase	
68	 52.65 +2    80264..80905    	 +	213	16752363	-	CP0069	-	hypothetical protein	
69	 45.69 +1    81183..82331    	 +	382	16752364	-	CP0070	-	hypothetical protein	
70	 43.25       82367..83536    	 +	389	16752365	-	CP0071	-	conserved hypothetical protein	
71	 40.87       83665..84819    	 +	384	16752366	-	CP0072	-	conserved hypothetical protein	
72	 41.10       84916..86010    	 +	364	16752367	-	CP0073	J	Nol1/Nop2/Sun family protein	
73	 37.78       86118..86297    	 -	59	16752368	-	CP0074	L	conserved hypothetical protein	
74	 44.09 +1    86533..87843    	 -	436	16752369	-	CP0075	M	D-alanyl-D-alanine carboxypeptidase	
75	 40.09       87954..88382    	 +	142	16752370	-	CP0076	-	conserved hypothetical protein	
76	 40.62       88385..88837    	 -	150	16752371	-	CP0077	T	rsbW protein, putative	
77	 38.83       88806..89405    	 -	199	16752372	-	CP0078	-	conserved hypothetical protein	
78	 39.92       89419..90375    	 -	318	16753067	-	CP0079	R	conserved hypothetical protein	
79	 43.39       90527..91411    	 +	294	16752373	-	CP0080	-	conserved hypothetical protein	
80	 40.26       91475..95197    	 -	1240	16752374	-	CP0081	L	DNA polymerase III, alpha subunit	
81	 42.18       95217..96584    	 -	455	16752375	-	CP0082	G	GlpT/PgpT/UhpT family protein	
82	 39.22       96828..97031    	 +	67	16752376	-	CP0083	-	hypothetical protein	
83	 41.14       97395..98687    	 +	430	16752377	-	CP0084	J	histidyl-tRNA synthetase	
84	 40.85       98662..100416   	 +	584	16752378	-	CP0085	J	aspartyl-tRNA synthetase	
85	 38.61      100485..101261   	 +	258	16752379	-	CP0086	O	peptidyl-prolyl cis-trans isomerase Mip	
86	 40.13      101258..101728   	 +	156	16752380	-	CP0087	J	spoU rRNA methylase family protein	
87	 41.42      101744..102052   	 -	102	16752381	-	CP0088	O	thioredoxin	
88	 39.75      102417..103133   	 +	238	16752382	-	CP0089	-	conserved hypothetical protein	
89	 39.91      103112..103537   	 +	141	16752383	-	CP0090	R	conserved hypothetical protein	
90	 41.44      103534..103644   	 -	36	16752384	-	CP0091	-	hypothetical protein	
91	 37.20      103738..104487   	 +	249	16752385	-	CP0092	L	DNA polymerase III, epsilon subunit, putative	
92	 41.45      104618..105085   	 +	155	16752386	-	CP0093	I	cytosolic acyl-CoA thioester hydrolase family protein	
93	 42.44      105095..106720   	 +	541	16752387	-	CP0094	M	apolipoprotein N-acyltransferase, putative	
94	 39.35      106735..107598   	 +	287	16752388	-	CP0095	M	UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase	
95	 40.26      107610..108071   	 +	153	16752389	-	CP0096	I	(3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase	
96	 42.14      108084..108923   	 +	279	16752390	-	CP0097	M	acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine o-acyltransferase	
97	 44.82 +1   108913..109878   	 +	321	16752391	-	CP0098	J	methionyl-tRNA formyltransferase	
98	 44.31 +1   109982..110983   	 +	333	16752392	-	CP0099	-	conserved hypothetical protein	
99	 41.36      111272..111931   	 +	219	16752393	-	CP0100	J	ribosomal protein L3	
100	 36.89 -1   111964..112638   	 +	224	16752394	-	CP0101	J	ribosomal protein L4	

 
 40.53 MEAN 
 
 3.43  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.