IslandPath Analysis: Chlamydophila pneumoniae CWL029



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 2.78
Chlamydophila pneumoniae CWL029 complete genome - 0..1230230
1054 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 40.07           1..282      	 -	93	15617930	CPn0001	CPn0001	S	CT001 hypothetical protein	
2	 38.56         573..878      	 +	101	15617931	gatC	CPn0002	J	Glu-tRNA Gln Amidotransferase (C subunit)	
3	 44.08 +1      895..2373     	 +	492	15617932	gatA	CPn0003	J	Glu tRNA Gln Amidotransferae (A subunit)	
4	 43.01        2370..3836     	 +	488	15617933	gatB	CPn0004	J	(Pet112) Glu tRNA Gln Amidotransferase (B Subunit)	
5	 41.10        4127..6895     	 +	922	15617934	pmp_1	CPn0005	-	Polymorphic Outer Membrane Protein G Family	
6	 51.28 +2     7138..7293     	 -	51	15617935	CPn0006	CPn0006	-	hypothetical protein	
7	 40.93        7605..10499    	 +	964	15617936	CPn0007	CPn0007	-	hypothetical protein	
8	 43.28       10975..11688    	 +	237	15617937	CPn0008	CPn0008	-	hypothetical protein	
9	 41.21       11815..13122    	 +	435	15617938	CPn0009	CPn0009	-	hypothetical protein	
10	 45.53 +1    13435..14328    	 +	297	15617939	CPn0010	CPn0010	-	hypothetical protein	
11	 43.33       14379..15749    	 +	456	15617940	CPn0010.1	CPn0010.1	-	frame-shift with CPn0010	
12	 38.15       15892..16617    	 +	241	15617941	CPn0011	CPn0011	-	hypothetical protein	
13	 38.42       16644..18215    	 +	523	15617942	CPn0012	CPn0012	-	hypothetical protein	
14	 43.31       18584..21109    	 +	841	15617943	pmp_2	CPn0013	-	Polymorphic Outer Membrane Protein G Family	
15	 42.96       30600..32687    	 -	695	15617944	CPn0020	CPn0020	-	Predicted OMP [leader peptide: outer membrane]	
16	 44.23 +1    32704..34410    	 -	568	15617945	CPn0021	CPn0021	-	Predicted OMP [leader peptide]	
17	 40.27       34392..34982    	 -	196	15617946	maf	CPn0022	D	Maf-type protein	
18	 41.12       35011..36603    	 -	530	15617947	yjjK	CPn0023	R	ABC Transporter Protein ATPase	
19	 42.07       36658..37596    	 -	312	15617948	xerC	CPn0024	L	Integrase/recombinase	
20	 43.18       37681..38604    	 -	307	15617949	atsA	CPn0025	R	Sulphohydrolase/Glycosulfatase	
21	 41.75       38759..39625    	 -	288	15617950	CPn0026	CPn0026	-	CT345 hypothetical protein	
22	 40.77       39775..42234    	 -	819	15617951	lon	CPn0027	O	Lon ATP-dependent Protease	
23	 36.51 -1    42540..43325    	 -	261	15617952	CPn0028	CPn0028	-	hypothetical protein	
24	 37.67 -1    43387..43755    	 -	122	15617953	CPn0029	CPn0029	-	hypothetical protein	
25	 41.43       43891..44532    	 +	213	15617954	gcp_1	CPn0030	O	O-Sialoglycoprotein Endopeptidase	
26	 40.68       44711..44887    	 +	58	15617955	rs21	CPn0031	J	S21 Ribosomal Protein	
27	 43.85 +1    44923..46101    	 +	392	15617956	dnaJ	CPn0032	O	Heat Shock Protein J	
28	 45.16 +1    46138..48174    	 +	678	15617957	pdhA/pdhB	CPn0033	C	(pyruvate) Oxoisovalerate Dehydrogenase Alpha & Beta Fusion	
29	 41.49       48207..49457    	 -	416	15617958	CPn0034	CPn0034	-	hypothetical protein	
30	 43.92 +1    49566..51029    	 -	487	15617959	CPn0035	CPn0035	R	CT339 hypothetical protein	
31	 40.35       51002..51799    	 +	265	15617960	CPn0036	CPn0036	-	CT338 hypothetical protein	
32	 40.98       51792..52118    	 +	108	15617961	ptsH	CPn0037	G	PTS Phosphocarrier Protein Hpr	
33	 43.01       52119..53834    	 +	571	15617962	ptsI	CPn0038	G	PTS PEP Phosphotransferase	
34	 41.92       53960..54250    	 -	96	15617963	ybaB	CPn0039	S	YbaB family hypothetical protein	
35	 40.71       54315..55643    	 -	442	15617964	dnaX_1	CPn0040	L	DNA Polymerase III Gamma and Tau	
36	 43.33       55996..57345    	 +	449	15617965	CPn0041	CPn0041	-	hypothetical protein	
37	 40.74       57403..58185    	 +	260	15617966	CPn0042	CPn0042	-	hypothetical protein	
38	 43.18       58447..60375    	 +	642	15617967	CPn0043	CPn0043	-	hypothetical protein	
39	 38.57       60419..60781    	 +	120	15617968	CPn0044	CPn0044	-	hypothetical protein	
40	 43.30       61069..62793    	 +	574	15617969	CPn0045	CPn0045	-	hypothetical protein	
41	 39.62       62790..63266    	 +	158	15617970	CPn0046	CPn0046	-	hypothetical protein	
42	 33.33 -2    63455..63655    	 +	66	15617971	CPn0047	CPn0047	-	hypothetical protein	
43	 41.88       63687..65804    	 +	705	15617972	yqfF	CPn0048	R	conserved hypothetical inner membrane protein	
44	 39.75       65814..66296    	 -	160	15617973	CPn0049	CPn0049	-	hypothetical protein	
45	 39.94       66496..66813    	 -	105	15617974	CPn0050	CPn0050	-	hypothetical protein	
46	 41.49       66833..67114    	 +	93	15617975	CPn0051	CPn0051	-	hypothetical protein	
47	 45.39 +1    67301..68005    	 -	234	15617976	hemC	CPn0052	H	Porphobilinogen Deaminase	
48	 43.83 +1    67983..69344    	 -	453	15617977	sms	CPn0053	O	Sms Protein	
49	 43.00       69310..70023    	 -	237	15617978	rnc	CPn0054	K	Ribonuclease III	
50	 40.86       70129..70593    	 +	154	15617979	CPn0055	CPn0055	-	CT296 hypothetical protein	
51	 43.07       70953..72749    	 +	598	15617980	mrsA	CPn0056	G	Phosphomannomutase	
52	 39.90       72934..73557    	 +	207	15617981	sodM	CPn0057	P	Superoxide Dismutase (Mn)	
53	 42.93       73639..74565    	 +	308	15617982	accD	CPn0058	I	AcCoA Carboxylase/Transferase Beta	
54	 45.66 +1    74616..75053    	 +	145	15617983	dut	CPn0059	F	dUTP Nucleotidohydrolase	
55	 41.51       75055..75531    	 +	158	15617984	ptsN_1	CPn0060	G	PTS IIA Protein	
56	 39.09       75534..76211    	 +	225	15617985	ptsN_2	CPn0061	G	PTS IIA Protein + HTH DNA-Binding Domain	
57	 40.98       76308..77693    	 +	461	15617986	CPn0062	CPn0062	-	CT289 hypothetical protein	
58	 36.48 -1    78112..78270    	 +	52	15617987	CPn0063	CPn0063	-	hypothetical protein	
59	 46.15 +1    78346..78579    	 +	77	15617988	CPn0064	CPn0064	-	hypothetical protein	
60	 41.71       78924..80654    	 +	576	15617989	CPn0065	CPn0065	-	CT288 hypothetical protein	
61	 42.85       80925..82658    	 +	577	15617990	CPn0066	CPn0066	-	hypothetical protein	
62	 39.31       82953..84056    	 +	367	15617991	CPn0067	CPn0067	-	hypothetical protein	
63	 36.11 -1    84328..84903    	 -	191	15617992	CPn0068	CPn0068	-	CT360 hypothetical protein	
64	 44.50 +1    85236..87089    	 +	617	15617993	CPn0069	CPn0069	-	hypothetical protein	
65	 36.21 -1    87205..87378    	 -	57	15617994	CPn0070	CPn0070	-	hypothetical protein	
66	 36.00 -1    87596..88045    	 -	149	15617995	CPn0071	CPn0071	R	CT325 hypothetical protein	
67	 37.80 -1    88054..89061    	 -	335	15617996	CPn0072	CPn0072	-	CT324 hypothetical protein	
68	 42.79       89356..89577    	 +	73	15617997	infA	CPn0073	J	Initiation Factor IF-1	
69	 43.12       89774..90958    	 +	394	15617998	tufA	CPn0074	J	Elongation Factor Tu	
70	 32.54 -2    91102..91353    	 +	83	15617999	secE	CPn0075	N	preprotein translocase	
71	 38.07 -1    91358..91906    	 +	182	15618000	nusG	CPn0076	K	Transcriptional Antitermination	
72	 38.26       92013..92438    	 +	141	15618001	rl11	CPn0077	J	L11 Ribosomal Protein	
73	 38.63       92465..93163    	 +	232	15618002	rl1	CPn0078	J	L1 Ribosomal Protein	
74	 40.35       93179..93691    	 +	170	15618003	rl10	CPn0079	J	L10 Ribosomal Protein	
75	 38.72       93735..94124    	 +	129	15618004	rl7	CPn0080	J	L7/L12 Ribosomal Protein	
76	 40.22       94261..98019    	 +	1252	15618005	rpoB	CPn0081	K	RNA Polymerase Beta	
77	 40.44       98043..102224   	 +	1393	15618006	rpoC	CPn0082	K	RNA Polymerase Beta'	
78	 38.82      102332..103315   	 +	327	15618007	tal	CPn0083	G	Transaldolase	
79	 33.33 -2   103362..103754   	 +	130	15618008	CPn0084	CPn0084	-	predicted ferredoxin	
80	 38.98      103763..104506   	 -	247	15618009	CPn0085	CPn0085	-	CT311 hypothetical protein	
81	 40.83      104904..105530   	 +	208	15618010	atpE	CPn0086	C	ATP Synthase Subunit E	
82	 36.70 -1   105579..106379   	 +	266	15618011	CPn0087	CPn0087	-	CT309 hypothetical protein	
83	 42.00      106373..108148   	 +	591	15618012	atpA	CPn0088	C	ATP Synthase Subunit A	
84	 40.09      108153..109469   	 +	438	15618013	atpB	CPn0089	C	ATP Synthase Subunit B	
85	 39.68      109454..110083   	 +	209	15618014	atpD	CPn0090	C	ATP Synthase Subunit D	
86	 39.69      110074..112056   	 +	660	15618015	atpI	CPn0091	C	ATP Synthase Subunit I	
87	 43.66 +1   112151..112576   	 +	141	15618016	atpK	CPn0092	C	ATP Synthase Subunit K	
88	 43.53      112509..113018   	 +	169	15618017	CPn0093	CPn0093	-	CT303 hypothetical protein	
89	 42.47      113152..115974   	 +	940	15618018	valS	CPn0094	J	Valyl tRNA Synthetase	
90	 40.62      116037..118793   	 +	918	15618019	CPn0095	CPn0095	T	S/T Protein Kinase	
91	 42.26      118834..124314   	 -	1826	15618020	uvrA	CPn0096	L	Excinuclease ABC Subunit A	
92	 42.61      124555..126009   	 +	484	15618021	pyk	CPn0097	G	Pyruvate Kinase	
93	 39.03      126088..127491   	 -	467	15618022	htrB	CPn0098	N	Acyltransferase	
94	 40.22      127593..127868   	 +	91	15618023	CPn0099	CPn0099	-	hypothetical protein	
95	 36.34 -1   127879..129141   	 -	420	15618024	CPn0100	CPn0100	-	CT011 hypothetical protein	
96	 41.13      129138..129932   	 -	264	15618025	ybbP	CPn0101	S	YbbP family hypothetical protein	
97	 38.08 -1   130123..131469   	 +	448	15618026	cydA	CPn0102	C	Cytochrome Oxidase Subunit I	
98	 39.61      131480..132514   	 +	344	15618027	cydB	CPn0103	C	Cytochrome Oxidase Subunit II	
99	 40.65      132673..133875   	 -	400	15618028	CPn0104	CPn0104	-	CT017 hypothetical protein	
100	 39.54      134026..134847   	 -	273	15618029	CPn0105	CPn0105	-	CT016 hypothetical protein	

 
 40.88 MEAN 
 
 2.78  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.