IslandPath Analysis: Coxiella burnetii RSA 493



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 42.62   STD DEV: 5.05
Coxiella burnetii RSA 493, complete genome - 0..1995275
2009 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 44.69         140..1495     	 +	451	29653365	dnaA	CBU0001	-	chromosomal replication initiator protein DnaA	
2	 43.60        1639..2748     	 +	369	29653366	dnaN	CBU0002	-	DNA polymerase III, beta subunit	
3	 43.21        2723..3826     	 +	367	29653367	recF	CBU0003	-	recF protein	
4	 46.97        4128..6554     	 +	808	29653368	gyrB	CBU0004	-	DNA gyrase, B subunit	
5	 44.62        6528..6722     	 -	64	29653369	-	CBU0005	-	hypothetical protein	
6	 48.92 +1     6759..7778     	 +	339	29653370	-	CBU0006	-	IS1111A, transposase	
7	 30.99 -2     8186..8398     	 -	70	29653371	-	CBU0007	-	conserved hypothetical protein	
8	 38.62        8716..8904     	 +	62	29653372	-	CBU0008	-	hypothetical protein	
9	 42.54        9560..10993    	 +	477	29653373	dacB	CBU0009	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	
10	 42.61       10986..11804    	 +	272	29653374	aroE	CBU0010	-	shikimate 5-dehydrogenase	
11	 23.81 -2    11893..11997    	 +	34	29653375	-	CBU0011	-	hypothetical protein	
12	 45.38       12148..12504    	 -	118	29653376	-	CBU0012	-	hypothetical protein	
13	 37.32 -1    12531..12956    	 -	141	29653377	-	CBU0013	-	hypothetical protein	
14	 43.70       13226..14479    	 -	417	29653378	-	CBU0014	-	phosphate transporter family protein	
15	 37.59       14592..15272    	 +	226	29653379	-	CBU0015	-	conserved hypothetical protein TIGR00153	
16	 44.28       15274..16095    	 +	273	29653380	xapA	CBU0016	-	xanthosine phosphorylase	
17	 43.53       16092..16817    	 +	241	29653381	deoC	CBU0017	-	deoxyribose-phosphate aldolase	
18	 34.23 -1    16901..17344    	 +	147	29653382	-	CBU0018	-	hypothetical protein	
19	 53.15 +2    17457..17567    	 -	36	29653383	-	CBU0019	-	hypothetical protein	
20	 43.39       17575..18111    	 -	178	29653384	-	CBU0020	-	sigma 54 modulation protein, putative	
21	 36.01 -1    18337..20766    	 +	809	29653385	-	CBU0021	-	hypothetical protein	
22	 38.02       21004..21813    	 +	269	29653386	-	CBU0022	-	hypothetical protein	
23	 46.51       21819..22319    	 -	166	29653387	-	CBU0023	-	hypothetical protein	
24	 47.34       22459..22665    	 -	68	29653388	csrA-1	CBU0024	-	carbon storage regulator	
25	 44.72       22761..22883    	 -	40	29653389	-	CBU0025	-	hypothetical protein	
26	 46.15       23030..23692    	 -	220	29653390	rpiA	CBU0026	-	ribose 5-phosphate isomerase	
27	 39.84       23834..24724    	 -	296	29653391	-	CBU0027	-	acyltransferase family protein	
28	 40.33       26405..27133    	 -	242	29653392	-	CBU0029	-	acyltransferase family protein	
29	 44.61       27090..28277    	 -	395	29653393	-	CBU0030	-	3-hydroxy-3-methylglutaryl Coenzyme A reductase	
30	 47.82 +1    28376..29314    	 -	312	29653394	-	CBU0031	-	oxidoreductase, short chain dehydrogenase/reductase family	
31	 49.46 +1    29546..29824    	 +	92	29653395	-	CBU0032	-	hypothetical protein	
32	 44.59       29917..30618    	 -	233	29653396	-	CBU0033	-	hypothetical protein	
33	 35.25 -1    30622..30882    	 -	86	29653397	-	CBU0034	-	acyl carrier protein	
34	 48.86 +1    30905..32179    	 -	424	29653398	-	CBU0035	-	beta-ketoacyl synthase	
35	 40.00       32176..32655    	 -	159	29653399	-	CBU0036	-	(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase, putative	
36	 48.23 +1    32659..33222    	 -	187	29653400	fabA	CBU0037	-	3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase	
37	 43.50       33474..34457    	 -	327	29653401	-	CBU0038	-	3-oxoacyl-(acyl-carrier-protein) synthase III, putative	
38	 41.99       34538..36571    	 -	677	29653402	prlC	CBU0039	-	oligopeptidase A	
39	 48.92 +1    36695..37714    	 +	339	29653403	-	CBU0040	-	IS1111A, transposase	
40	 39.94       38088..40220    	 -	710	29653404	-	CBU0041	-	hypothetical protein	
41	 38.47       40319..41350    	 -	343	29653405	hemH	CBU0042	-	ferrochelatase	
42	 48.09 +1    41407..42009    	 +	200	29653406	-	CBU0043	-	HAM1 protein	
43	 46.48       42119..42871    	 +	250	29653407	-	CBU0044	-	hypothetical protein	
44	 47.77 +1    42968..43528    	 -	186	29653408	-	CBU0045	-	lipoprotein, putative	
45	 45.06       45629..46609    	 -	326	29653409	-	CBU0048	-	lipoprotein, putative	
46	 39.66       46663..47973    	 -	436	29653410	-	CBU0049	-	hypothetical protein	
47	 40.63       48166..48768    	 -	200	29653411	-	CBU0050	-	hypothetical protein	
48	 35.19 -1    48793..49332    	 -	179	29653412	-	CBU0051	-	hypothetical protein	
49	 34.34 -1    49316..49414    	 -	32	29653413	-	CBU0052	-	hypothetical protein	
50	 47.47       49486..50235    	 +	249	29653414	-	CBU0053	-	enhanced entry protein EnhA, putative	
51	 45.52       50305..50862    	 +	185	29653415	-	CBU0054	-	chorismate--pyruvate lyase, putative	
52	 44.33       50855..51718    	 +	287	29653416	ubiA	CBU0055	-	4-hydroxybenzoate octaprenyltransferase	
53	 47.65       51830..53680    	 +	616	29653417	-	CBU0056	-	outer membrane protein TolC, putative	
54	 67.44 +2    53728..53856    	 +	42	29653418	-	CBU0057	-	hypothetical protein	
55	 38.71       53896..53988    	 +	30	29653419	-	CBU0058	-	hypothetical protein	
56	 41.27       53967..54092    	 +	41	29653420	-	CBU0059	-	hypothetical protein	
57	 41.11       54234..54593    	 +	119	29653421	-	CBU0060	-	hypothetical protein	
58	 40.52       54653..55849    	 +	398	29653422	-	CBU0061	-	conserved hypothetical protein	
59	 38.11       55870..57375    	 +	501	29653423	-	CBU0062	-	DnaJ domain protein	
60	 48.16 +1    57361..58635    	 -	424	29653424	kdtA	CBU0063	-	3-deoxy-D-manno-octulosonic-acid transferase	
61	 46.21       58768..60678    	 +	636	29653425	parE	CBU0064	-	DNA topoisomerase IV, B subunit	
62	 44.53       60867..61241    	 +	124	29653426	-	CBU0065	-	rhodanese domain protein	
63	 39.90       61633..62226    	 -	197	29653427	-	CBU0066	-	5-formyltetrahydrofolate cyclo-ligase family protein	
64	 42.90       62435..62758    	 -	107	29653428	-	CBU0067	-	conserved hypothetical protein	
65	 35.83 -1    62755..62994    	 -	79	29653429	-	CBU0068	-	conserved hypothetical protein	
66	 42.69       63382..63723    	 +	113	29653430	-	CBU0069	-	hypothetical protein	
67	 44.52       63732..64580    	 +	282	29653431	-	CBU0070	-	hypothetical protein	
68	 42.26       64571..65545    	 +	324	29653432	-	CBU0071	-	hypothetical protein	
69	 45.83       65611..66810    	 +	399	29653433	-	CBU0072	-	ankyrin repeat domain protein	
70	 45.04       66900..68693    	 -	597	29653434	-	CBU0073	-	peptidase, M24 family protein	
71	 53.15 +2    68781..69002    	 -	73	29653435	-	CBU0074	-	hypothetical protein	
72	 47.28       69001..70233    	 +	410	29653436	ubiH	CBU0075	-	2-octaprenyl-6-methoxyphenol hydroxylase	
73	 42.88       70223..71458    	 +	411	29653437	visC	CBU0076	-	visC protein	
74	 38.89       71573..72364    	 +	263	29653438	-	CBU0077	-	hypothetical protein	
75	 46.91       72399..72560    	 -	53	29653439	-	CBU0078	-	hypothetical protein	
76	 32.31 -2    72540..72929    	 +	129	29653440	-	CBU0079	-	transcriptional regulator, putative	
77	 37.47 -1    73046..73528    	 +	160	29653441	-	CBU0080	-	hypothetical protein	
78	 46.62       73564..75264    	 +	566	29653442	proS	CBU0081	-	prolyl-tRNA synthetase	
79	 38.52       75257..75391    	 -	44	29653443	-	CBU0082	-	hypothetical protein	
80	 47.10       75366..75503    	 +	45	29653444	-	CBU0083	-	hypothetical protein	
81	 42.93       75638..77554    	 +	638	29653445	-	CBU0084	-	sulfatase domain protein	
82	 39.74       77808..77963    	 +	51	29653446	-	CBU0085	-	entericidin, putative	
83	 42.29       77974..78732    	 +	252	29653447	-	CBU0086	-	2-pyrone-4,6-dicarboxylic acid hydrolase, putative	
84	 40.64       78774..80690    	 +	638	29653448	-	CBU0087	-	sulfatase	
85	 47.92 +1    81688..81783    	 +	31	29653449	-	CBU0089	-	hypothetical protein	
86	 48.17 +1    82494..83807    	 +	437	29653450	tolB	CBU0090	-	tolB protein	
87	 48.45 +1    83856..84404    	 +	182	29653451	-	CBU0091	-	peptidoglycan-associated lipoprotein, putative	
88	 42.19       84451..85308    	 +	285	29653452	-	CBU0092	-	conserved hypothetical protein	
89	 45.02       85311..85952    	 +	213	29653453	-	CBU0093	-	radical SAM domain protein	
90	 44.69       86265..88844    	 +	859	29653454	clpB	CBU0094	-	clpB protein	
91	 42.21       88841..89809    	 +	322	29653455	-	CBU0095	-	sodium/calcium antiporter family protein	
92	 43.62       89793..90968    	 -	391	29653456	clS	CBU0096	-	cardiolipin synthetase	
93	 46.14       91430..92194    	 +	254	29653457	pssA	CBU0097	-	CDP-diacylglycerol--serine O-phosphatidyltransferase	
94	 45.45       92194..93018    	 +	274	29653458	nadC	CBU0098	-	nicotinate-nucleotide pyrophosphorylase	
95	 51.48 +1    93689..94162    	 +	157	29653459	sixA	CBU0099	-	phosphohistidine phosphatase SixA	
96	 36.07 -1    94164..94565    	 +	133	29653460	-	CBU0100	-	lipoprotein, putative	
97	 49.16 +1    94519..96129    	 -	536	29653461	nadB	CBU0101	-	L-aspartate oxidase	
98	 35.06 -1    96250..96423    	 -	57	29653462	-	CBU0102	-	hypothetical protein	
99	 45.05       96398..97840    	 -	480	29653463	-	CBU0103	-	peptidase, M20/M25/M40 family	
100	 42.34       99613..99723    	 +	36	29653464	-	CBU0106	-	hypothetical protein	

 
 42.62 MEAN 
 
 5.05  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.