IslandPath Analysis: Corynebacterium glutamicum



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.27   STD DEV: 3.89
Corynebacterium glutamicum, complete genome - 0..3309400
3040 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 54.10           1..1575     	 +	524	19551251	-	Cgl0001	-	COG0593:ATPase involved in DNA replication initiation	
2	 56.88        2292..3476     	 +	394	19551252	-	Cgl0002	-	COG0592:DNA polymerase sliding clamp subunit (PCNA homolog)	
3	 55.70        3585..4769     	 +	394	19551253	-	Cgl0003	-	COG1195:Recombinational DNA repair ATPase (RecF pathway)	
4	 55.12        4766..5302     	 +	178	19551254	-	Cgl0004	-	conserved hypothetical protein, predicted by GeneMark hmm	
5	 55.91        5435..7489     	 +	684	19551255	-	Cgl0005	-	COG0187:DNA gyrase (topoisomerase II) B subunit	
6	 51.08        7830..8798     	 +	322	19551256	-	Cgl0006	-	COG0596:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	
7	 48.68 -1     8795..9400     	 -	201	19551257	-	Cgl0007	-	COG2364:Uncharacterized membrane protein	
8	 55.18        9471..9914     	 -	147	19551258	-	Cgl0008	-	hypothetical protein, predicted by GeneMark hmm	
9	 58.71 +1    10104..11171    	 -	355	19551259	-	Cgl0009	-	COG1940:Transcriptional regulators	
10	 54.55       11260..11523    	 -	87	19551260	-	Cgl0010	-	hypothetical protein, predicted by GeneMark hmm	
11	 59.04 +1    11520..11768    	 -	82	19551261	-	Cgl0011	-	hypothetical protein, predicted by GeneMark hmm	
12	 59.43 +1    11831..14401    	 +	856	19551262	-	Cgl0012	-	COG0188:DNA gyrase (topoisomerase II) A subunit	
13	 51.88       14405..14749    	 +	114	19551263	-	Cgl0013	-	COG0477:Permeases of the major facilitator superfamily	
14	 51.46       15206..16132    	 -	308	19551264	-	Cgl0014	-	COG2855:Uncharacterized membrane protein	
15	 52.06       16314..17210    	 +	298	19551265	-	Cgl0015	-	COG0583:Transcriptional regulator	
16	 49.52 -1    17260..17673    	 +	137	19551266	-	Cgl0016	-	hypothetical protein, predicted by GeneMark hmm	
17	 52.92       17857..18729    	 -	290	19551267	-	Cgl0017	-	COG0526:Thiol-disulfide isomerase and thioredoxins	
18	 53.99       18733..19497    	 -	254	19551268	-	Cgl0018	-	COG1651:Protein-disulfide isomerase	
19	 54.30       19705..20076    	 +	123	19551269	-	Cgl0019	-	COG3682:Predicted transcriptional regulator	
20	 55.02       20073..21068    	 +	331	19551270	-	Cgl0020	-	COG0501:Zn-dependent protease with chaperone function	
21	 48.54 -1    21071..21241    	 -	56	19551271	-	Cgl0021	-	COG0656:Aldo/keto reductases, related to diketogulonate reductase	
22	 50.09 -1    21597..22127    	 +	176	19551272	-	Cgl0022	-	COG0737:5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases	
23	 53.43       22164..23402    	 +	412	19551273	-	Cgl0023	-	COG0737:5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases	
24	 54.91       24214..24732    	 +	172	19551274	-	Cgl0024	-	COG1764:Predicted redox protein, regulator of disulfide bond formation	
25	 45.27 -2    24882..26573    	 -	563	19551275	-	Cgl0025	-	COG2865:Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen	
26	 58.63 +1    26819..28099    	 -	426	19551276	-	Cgl0026	-	hypothetical protein, predicted by GeneMark hmm	
27	 51.52       28161..29117    	 -	318	19551277	-	Cgl0027	-	COG0803:ABC-type Mn/Zn transport system, periplasmic Mn/Zn-binding (lipo)protein (surface adhesin A)	
28	 51.17       29114..29965    	 -	283	19551278	-	Cgl0028	-	COG1108:ABC-type Mn2+/Zn2+ transport systems, permease components	
29	 54.39       29995..30654    	 +	219	19551279	-	Cgl0029	-	COG1121:ABC-type Mn/Zn transport systems, ATPase component	
30	 53.26       30838..31680    	 +	280	19551280	-	Cgl0030	-	COG1879:Periplasmic sugar-binding proteins	
31	 53.90       31677..32702    	 +	341	19551281	-	Cgl0031	-	COG1172:Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components	
32	 58.66 +1    32699..33460    	 +	253	19551282	-	Cgl0032	-	COG1129:ABC-type sugar (aldose) transport system, ATPase component	
33	 55.97       33462..34274    	 -	270	19551283	-	Cgl0033	-	hypothetical protein, predicted by GeneMark hmm	
34	 57.24       34330..34902    	 +	190	19551284	-	Cgl0034	-	COG0652:Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	
35	 49.42 -1    34982..35671    	 +	229	19551285	-	Cgl0035	-	COG0705:Uncharacterized membrane protein (homolog of Drosophila rhomboid)	
36	 50.35 -1    36244..37242    	 -	332	19551286	-	Cgl0036	-	COG2207:AraC-type DNA-binding domain-containing proteins	
37	 54.75       37245..38201    	 +	318	19551287	-	Cgl0037	-	COG0609:ABC-type cobalamin/Fe3+-siderophores transport systems, permease components	
38	 56.41       38202..38981    	 +	259	19551288	-	Cgl0038	-	COG1120:ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components	
39	 53.58       38978..39802    	 +	274	19551289	-	Cgl0039	-	COG2375:Siderophore-interacting protein	
40	 51.65       40186..40458    	 -	90	19551290	-	Cgl0040	-	conserved hypothetical protein, predicted by GeneMark hmm	
41	 58.94 +1    40573..42513    	 -	646	19551291	-	Cgl0041	-	COG0515:Serine/threonine protein kinases	
42	 55.67       42510..43919    	 -	469	19551292	-	Cgl0042	-	COG0515:Serine/threonine protein kinases	
43	 55.86       43923..45347    	 -	474	19551293	-	Cgl0043	-	COG0768:Cell division protein FtsI/penicillin-binding protein 2	
44	 55.13       45344..46669    	 -	441	19551294	-	Cgl0044	-	COG0772:Bacterial cell division membrane protein	
45	 54.87       46666..48021    	 -	451	19551295	-	Cgl0045	-	COG0631:Protein serine/threonine phosphatases	
46	 58.28 +1    48021..48485    	 -	154	19551296	-	Cgl0046	-	COG1716:FHA-domain-containing proteins	
47	 51.67       48502..49368    	 -	288	19551297	-	Cgl0047	-	COG1716:FHA-domain-containing proteins	
48	 49.79 -1    49894..50616    	 -	240	19551298	-	Cgl0048	-	hypothetical protein, predicted by GeneMark hmm	
49	 45.36 -2    50963..51436    	 -	157	19551299	-	Cgl0049	-	hypothetical protein, predicted by GeneMark hmm	
50	 57.64       51623..53095    	 -	490	19551300	-	Cgl0050	-	COG1012:NAD-dependent aldehyde dehydrogenases	
51	 56.21       53094..54011    	 +	305	19551301	-	Cgl0051	-	phenol hydroxylase related protein	
52	 52.74       54179..55549    	 +	456	19551302	-	Cgl0052	-	COG0491:Zn-dependent hydrolases, including glyoxylases	
53	 60.51 +1    55626..56372    	 -	248	19551303	-	Cgl0053	-	COG0730:Predicted permeases	
54	 48.64 -1    56383..56676    	 -	97	19551304	-	Cgl0054	-	COG0607:Rhodanese-related sulfurtransferases	
55	 49.83 -1    56677..57270    	 -	197	19551305	-	Cgl0055	-	COG0607:Rhodanese-related sulfurtransferases	
56	 52.33       57397..57654    	 +	85	19551306	-	Cgl0056	-	COG1937:Uncharacterized BCR	
57	 49.42 -1    58087..58944    	 +	285	19551307	-	Cgl0057	-	hypothetical protein, predicted by GeneMark hmm	
58	 52.55       59091..59933    	 +	280	19551308	-	Cgl0058	-	COG0653:Preprotein translocase subunit SecA (ATPase, RNA helicase)	
59	 54.20       59952..60665    	 +	237	19551309	-	Cgl0059	-	COG1285:Uncharacterized membrane protein	
60	 54.24       60699..62324    	 +	541	19551310	-	Cgl0060	-	hypothetical protein, predicted by GeneMark hmm	
61	 56.51       62387..63508    	 -	373	19551311	-	Cgl0061	-	COG0598:Mg2+ and Co2+ transporters	
62	 49.33 -1    63591..64040    	 -	149	19551312	-	Cgl0062	-	COG1942:Uncharacterized protein, 4-oxalocrotonate tautomerase homolog	
63	 58.58 +1    64163..65461    	 +	432	19551313	-	Cgl0063	-	COG0038:Chloride channel protein EriC	
64	 55.56       65505..66197    	 -	230	19551314	-	Cgl0064	-	COG3201:Nicotinamide mononucleotide transporter	
65	 56.64       66599..67975    	 +	458	19551315	-	Cgl0065	-	COG1875:Predicted ATPase related to phosphate starvation-inducible protein PhoH	
66	 53.23       68248..68634    	 -	128	19551316	-	Cgl0066	-	hypothetical protein, predicted by GeneMark hmm	
67	 59.96 +1    68717..70297    	 -	526	19551317	-	Cgl0067	-	COG2851:H+/citrate symporter	
68	 53.99       70506..72161    	 +	551	19551318	-	Cgl0068	-	COG3290:Signal transduction histidine kinase regulating citrate/malate metabolism	
69	 55.56       72161..72817    	 +	218	19551319	-	Cgl0069	-	COG2197:Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	
70	 51.69       72814..73728    	 -	304	19551320	-	Cgl0070	-	COG0111:Phosphoglycerate dehydrogenase and related dehydrogenases	
71	 50.69       73844..74275    	 +	143	19551321	-	Cgl0071	-	hypothetical protein, predicted by GeneMark hmm	
72	 54.63       74490..75494    	 +	334	19551322	-	Cgl0072	-	COG0502:Biotin synthase and related enzymes	
73	 59.22 +1    75727..75981    	 -	84	19551323	-	Cgl0073	-	hypothetical protein, predicted by GeneMark hmm	
74	 52.89       82117..83568    	 -	483	19551324	-	Cgl0074	-	COG0477:Permeases of the major facilitator superfamily	
75	 53.12       83688..84935    	 -	415	19551325	-	Cgl0075	-	COG0402:Cytosine deaminase and related metal-dependent hydrolases	
76	 54.05       85095..85403    	 -	102	19551326	-	Cgl0076	-	hypothetical protein, predicted by GeneMark hmm	
77	 48.23 -1    85426..85566    	 -	46	19551327	-	Cgl0077	-	hypothetical protein, predicted by GeneMark hmm	
78	 57.75       85660..86220    	 -	186	19551328	-	Cgl0078	-	hypothetical protein, predicted by GeneMark hmm	
79	 57.31       86657..87244    	 +	195	19551329	-	Cgl0079	-	COG0846:NAD-dependent protein deacetylases, SIR2 family	
80	 54.36       87558..88532    	 -	324	19551330	-	Cgl0080	-	COG1075:Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold	
81	 56.81       88542..89444    	 -	300	19551331	-	Cgl0081	-	COG1075:Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold	
82	 53.00       89615..90448    	 +	277	19551332	-	Cgl0082	-	hypothetical protein, predicted by GeneMark hmm	
83	 48.26 -1    90458..90973    	 -	171	19551333	-	Cgl0083	-	COG1846:Transcriptional regulators	
84	 52.81       91174..91476    	 +	100	19551334	-	Cgl0084	-	COG0831:Urea amidohydrolase (urease) gamma subunit	
85	 55.21       91503..91991    	 +	162	19551335	-	Cgl0085	-	COG0832:Urea amidohydrolase (urease) beta subunit	
86	 52.66       91992..93704    	 +	570	19551336	-	Cgl0086	-	COG0804:Urea amidohydrolase (urease) alpha subunit	
87	 50.42       93729..94202    	 +	157	19551337	-	Cgl0087	-	COG2371:Urease accessory protein UreE	
88	 51.54       94202..94882    	 +	226	19551338	-	Cgl0088	-	COG0830:Urease accessory protein UreF	
89	 49.84 -1    94899..95516    	 +	205	19551339	-	Cgl0089	-	COG0378:Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	
90	 55.52       95517..96368    	 +	283	19551340	-	Cgl0090	-	COG0829:Urease accessory protein UreH	
91	 52.31       96365..97144    	 -	259	19551341	-	Cgl0091	-	COG0596:Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	
92	 57.84       97316..98470    	 -	384	19551342	-	Cgl0092	-	COG0477:Permeases of the major facilitator superfamily	
93	 54.64       98805..101582   	 -	925	19551343	-	Cgl0093	-	COG0240:Glycerol 3-phosphate dehydrogenase	
94	 54.95      101609..103435   	 -	608	19551344	-	Cgl0094	-	COG0326:Molecular chaperone, HSP90 family	
95	 56.03      103503..104912   	 +	469	19551345	-	Cgl0095	-	COG0775:Nucleoside phosphorylase	
96	 57.22      105170..105751   	 -	193	19551346	-	Cgl0096	-	hypothetical protein, predicted by GeneMark hmm	
97	 60.12 +1   105838..106356   	 -	172	19551347	-	Cgl0097	-	COG0028:Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]	
98	 51.45      106627..107178   	 -	183	19551348	-	Cgl0098	-	hypothetical protein, predicted by GeneMark hmm	
99	 58.28 +1   107435..110893   	 +	1152	19551349	-	Cgl0099	-	COG0506:Proline dehydrogenase	
100	 54.11      111374..112321   	 +	315	19551350	-	Cgl0100	-	COG0667:Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)	

 
 54.27 MEAN 
 
 3.89  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.