IslandPath Analysis: Corynebacterium efficiens YS-314



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.02   STD DEV: 4.20
Corynebacterium efficiens YS-314, complete genome - 0..3147090
2950 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 63.76           1..1722     	 +	573	25026557	-	CE0001	-	putative chromosomal replication initiator protein DnaA	
2	 53.65 -2     2289..2603     	 -	104	25026558	-	CE0002	-	hypothetical protein	
3	 64.39        2592..3776     	 +	394	25026559	-	CE0003	-	putative DNA polymerase III beta subunit	
4	 64.66        3878..5074     	 +	398	25026560	-	CE0004	-	putative DNA replication and repair protein RecF	
5	 64.78        5071..5652     	 +	193	25026561	-	CE0005	-	conserved hypothetical protein	
6	 63.13        5786..7849     	 +	687	25026562	-	CE0006	-	putative DNA gyrase subunit B	
7	 66.00        7945..8847     	 +	300	25026563	-	CE0007	-	hypothetical protein	
8	 64.60        9128..9709     	 +	193	25026564	-	CE0008	-	hypothetical protein	
9	 61.54        9994..10422    	 +	142	25026565	-	CE0009	-	putative transcription regulator	
10	 67.95 +1    10419..12371    	 +	650	25026566	-	CE0010	-	putative cation-transporting ATPase	
11	 62.29       12368..13030    	 -	220	25026567	-	CE0011	-	hypothetical protein	
12	 62.44       13034..13483    	 -	149	25026568	-	CE0012	-	hypothetical protein	
13	 72.35 +2    13701..13964    	 -	87	25026569	-	CE0013	-	hypothetical protein	
14	 70.00 +1    13961..14170    	 -	69	25026570	-	CE0014	-	conserved hypothetical protein	
15	 64.97       14297..16888    	 +	863	25026571	-	CE0015	-	putative DNA gyrase subunit A	
16	 61.16       16892..17236    	 +	114	25026572	-	CE0016	-	conserved hypothetical protein	
17	 65.09       17585..19357    	 -	590	25026573	-	CE0017	-	putative ABC transporter permease protein	
18	 66.50       19514..20725    	 +	403	25026574	-	CE0018	-	putative transcription regulator	
19	 67.80 +1    20848..21816    	 +	322	25026575	-	CE0019	-	putative lipoprotein	
20	 62.34       21813..22853    	 +	346	25026576	-	CE0020	-	putative ABC transporter permease protein	
21	 66.27       22850..23611    	 +	253	25026577	-	CE0021	-	putative sugar transport ATP-binding protein	
22	 51.91 -2    23915..24097    	 +	60	25026578	-	CE0022	-	hypothetical protein	
23	 62.46       24090..25514    	 +	474	25026579	-	CE0023	-	putative glutamyl-tRNA(Gln) amidotransferase subunit A	
24	 61.21       25592..26269    	 +	225	25026580	-	CE0024	-	conserved hypothetical protein	
25	 67.19       26288..27433    	 +	381	25026581	-	CE0025	-	conserved hypothetical protein	
26	 60.52       27422..28543    	 -	373	25026582	-	CE0026	-	putative regulatory protein	
27	 62.01       28720..29256    	 +	178	25026583	-	CE0027	-	conserved hypothetical protein	
28	 63.98       29344..30198    	 -	284	25026584	-	CE0028	-	hypothetical protein	
29	 61.90       30202..30810    	 +	202	25026585	-	CE0029	-	putative peptidylprolyl isomerase	
30	 63.90       30892..31578    	 +	228	25026586	-	CE0030	-	conserved hypothetical protein	
31	 58.21 -1    32625..32825    	 -	66	25026587	-	CE0031	-	conserved hypothetical protein	
32	 56.92 -1    32797..32991    	 +	64	25026588	-	CE0032	-	hypothetical protein	
33	 67.42 +1    33123..35105    	 -	660	25026589	-	CE0033	-	putative serine/threonine-protein kinase	
34	 66.92       35102..36664    	 -	520	25026590	-	CE0034	-	putative serine/threonine-protein kinase	
35	 65.41       36664..38091    	 -	475	25026591	-	CE0035	-	conserved hypothetical protein	
36	 64.53       38088..39446    	 -	452	25026592	-	CE0036	-	putative cell division protein FtsW	
37	 65.83       39443..40759    	 -	438	25026593	-	CE0037	-	conserved hypothetical protein	
38	 64.74       40759..41226    	 -	155	25026594	-	CE0038	-	conserved hypothetical protein	
39	 58.08 -1    41236..42132    	 -	298	25026595	-	CE0039	-	conserved hypothetical protein	
40	 50.75 -2    42648..42848    	 -	66	25026596	-	CE0040	-	hypothetical protein	
41	 60.91       42978..44192    	 +	404	25026597	-	CE0041	-	conserved hypothetical protein	
42	 56.41 -1    44230..44385    	 +	51	25026598	-	CE0042	-	hypothetical protein	
43	 53.59 -2    44382..44924    	 -	180	25026599	-	CE0043	-	conserved hypothetical protein	
44	 60.05       45178..45555    	 -	125	25026600	-	CE0044	-	hypothetical protein	
45	 59.16       45604..46056    	 +	150	25026601	-	CE0045	-	putative transposase	
46	 60.46       46431..46913    	 +	160	25026602	-	CE0046	-	hypothetical protein	
47	 60.55       46913..48727    	 +	604	25026603	-	CE0047	-	hypothetical protein	
48	 59.94       48937..50928    	 +	663	25026604	-	CE0048	-	putative restriction enzyme subunit S	
49	 54.70 -1    50925..52178    	 +	417	25026605	-	CE0049	-	conserved hypothetical protein	
50	 61.85       52175..55369    	 +	1064	25026606	-	CE0050	-	conserved hypothetical protein	
51	 58.89       55612..55791    	 +	59	25026607	-	CE0051	-	putative transposase	
52	 58.51 -1    55772..56323    	 +	183	25026608	-	CE0052	-	putative transposase	
53	 63.25       56864..57886    	 +	340	25026609	-	CE0053	-	putative alcohol dehydrogenase	
54	 65.32       58047..58343    	 -	98	25026610	-	CE0054	-	conserved hypothetical protein	
55	 65.00       58406..59065    	 -	219	25026611	-	CE0055	-	conserved hypothetical protein	
56	 60.12       59112..59432    	 -	106	25026612	-	CE0056	-	hypothetical protein	
57	 62.02       59154..59411    	 +	85	25026613	-	CE0057	-	conserved hypothetical protein	
58	 66.67       59515..59973    	 +	152	25026614	-	CE0058	-	conserved hypothetical protein	
59	 66.79       60221..61888    	 +	555	25026615	-	CE0059	-	hypothetical protein	
60	 63.91       62241..63329    	 +	362	25026616	-	CE0060	-	putative 2-keto-3-deoxygluconate permease	
61	 62.37       63359..64288    	 -	309	25026617	-	CE0061	-	putative transcription regulator	
62	 57.63 -1    64266..64442    	 +	58	25026618	-	CE0062	-	hypothetical protein	
63	 63.81       64623..65288    	 +	221	25026619	-	CE0063	-	conserved hypothetical protein	
64	 64.73       65383..65949    	 +	188	25026620	-	CE0064	-	conserved hypothetical protein	
65	 66.51       66152..67429    	 +	425	25026621	-	CE0065	-	conserved hypothetical protein	
66	 63.93       67464..68231    	 -	255	25026622	-	CE0066	-	hypothetical protein	
67	 63.55       68294..69415    	 -	373	25026623	-	CE0067	-	hypothetical protein	
68	 60.61       69645..69974    	 -	109	25026624	-	CE0068	-	hypothetical protein	
69	 64.56       69945..70940    	 +	331	25026625	-	CE0069	-	putative ribosomal protein S6 modification protein	
70	 57.32 -1    70944..73544    	 -	866	25026626	-	CE0070	-	hypothetical protein	
71	 61.86       73541..74893    	 -	450	25026627	-	CE0071	-	hypothetical protein	
72	 65.26       75109..77241    	 -	710	25026628	-	CE0072	-	putative catalase	
73	 64.35       77471..78892    	 -	473	25026629	-	CE0073	-	conserved hypothetical protein	
74	 54.39 -2    78873..79043    	 -	56	25026630	-	CE0074	-	hypothetical protein	
75	 62.45       79015..79251    	 +	78	25026631	-	CE0075	-	conserved hypothetical protein	
76	 56.12 -1    79248..79541    	 -	97	25026632	-	CE0076	-	hypothetical protein	
77	 67.01       79555..81291    	 +	578	25026633	-	CE0077	-	putative copper-transporting ATPase	
78	 65.62       81362..82507    	 -	381	25026634	-	CE0078	-	conserved hypothetical protein	
79	 63.87       82539..84038    	 -	499	25026635	-	CE0079	-	putative aldehyde dehydrogenase	
80	 69.98 +1    84241..85539    	 +	432	25026636	-	CE0080	-	conserved hypothetical protein	
81	 62.39       85592..86503    	 -	303	25026637	-	CE0081	-	hypothetical protein	
82	 63.33       86710..88176    	 +	488	25026638	-	CE0082	-	putative phosphate starvation-induced protein PhoH	
83	 62.52       88186..88884    	 +	232	25026639	-	CE0083	-	hypothetical protein	
84	 59.78       88878..89240    	 -	120	25026640	-	CE0084	-	conserved hypothetical protein	
85	 72.88 +2    89305..89481    	 -	58	25026641	-	CE0085	-	hypothetical protein	
86	 63.57       89566..89856    	 -	96	25026642	-	CE0086	-	hypothetical protein	
87	 65.79       89863..91227    	 -	454	25026643	-	CE0087	-	conserved hypothetical protein	
88	 59.59       91407..91844    	 +	145	25026644	-	CE0088	-	hypothetical protein	
89	 64.78       91953..92957    	 +	334	25026645	bioB	CE0089	-	biotin synthase	
90	 65.94       92957..93232    	 +	91	25026646	-	CE0090	-	conserved hypothetical protein	
91	 71.37 +1    93239..93982    	 -	247	25026647	-	CE0091	-	hypothetical protein	
92	 67.79 +1    94645..95622    	 +	325	25026648	-	CE0092	-	conserved hypothetical protein	
93	 67.89 +1    95627..96685    	 -	352	25026649	-	CE0093	-	conserved hypothetical protein	
94	 65.33       96645..98294    	 -	549	25026650	-	CE0094	-	conserved hypothetical protein	
95	 62.76       97641..98228    	 +	195	25026651	-	CE0095	-	putative transcription regulator	
96	 66.43       98301..99146    	 -	281	25026652	-	CE0096	-	hypothetical protein	
97	 69.64 +1    99234..100409   	 -	391	25026653	-	CE0097	-	hypothetical protein	
98	 67.51 +1   100511..101932   	 +	473	25026654	-	CE0098	-	conserved hypothetical protein	
99	 62.45      101969..103438   	 +	489	25026655	-	CE0099	-	putative AMP nucleosidase	
100	 63.06      103534..104226   	 -	230	25026656	-	CE0100	-	hypothetical protein	

 
 63.02 MEAN 
 
 4.20  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.