IslandPath Analysis: Clostridium perfringens



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens, complete genome - 0..3031430
2660 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 29.91         410..1783     	 +	457	18308983	dnaA	-	-	chromosomal replication initiator protein	
2	 27.97        2078..3178     	 +	366	18308984	dnaN	-	-	DNA-directed DNA polymerase III beta chain	
3	 28.99        3304..3510     	 +	68	18308985	CPE0003	-	-	conserved hypothetical protein	
4	 24.13 -1     3566..4651     	 +	361	18308986	recF	-	-	DNA repair and genetic recombination protein	
5	 29.89        4665..4925     	 +	86	18308987	CPE0005	-	-	conserved hypothetical protein	
6	 33.65 +1     5162..7078     	 +	638	18308988	gyrB	-	-	DNA gyrase subunit B	
7	 31.63        7100..9391     	 +	763	18308989	gyrA	-	-	DNA gyrase subunit A	
8	 31.35        9369..9620     	 +	83	18308990	CPE0008	-	-	hypothetical protein	
9	 25.98       15422..15625    	 +	67	18308991	CPE0009	-	-	hypothetical protein	
10	 22.79 -1    15633..15926    	 +	97	18308992	CPE0010	-	-	hypothetical protein	
11	 27.75       16277..19033    	 +	918	18308993	CPE0011	-	-	conserved hypothetical protein	
12	 28.46       19276..20670    	 +	464	18308994	CPE0012	-	-	conserved hypothetical protein	
13	 28.63       20683..20916    	 +	77	18308995	CPE0013	-	-	hypothetical protein	
14	 32.40       21262..22545    	 +	427	18308996	serS	-	-	serine-tRNA ligase	
15	 29.05       22722..23141    	 +	139	18308997	CPE0015	-	-	hypothetical protein	
16	 27.72       23757..24023    	 +	88	18308998	CPE0016	-	-	hypothetical protein	
17	 22.40 -1    24353..24535    	 -	60	18308999	CPE0017	-	-	hypothetical protein	
18	 26.53       24773..25654    	 +	293	18309000	CPE0018	-	-	hypothetical protein	
19	 31.52       25743..25907    	 -	54	18309001	CPE0019	-	-	hypothetical protein	
20	 28.16       26116..29592    	 +	1158	18309002	addB	-	-	ATP-dependent deoxyribonuclease chain B	
21	 29.05       29582..33388    	 +	1268	18309003	addA	-	-	ATP-dependent deoxyribonuclease chain A	
22	 25.80       33646..34920    	 -	424	18309004	papS	-	-	probable polynucleotide adenylyltransferase	
23	 30.21       35030..36022    	 +	330	18309005	CPE0023	-	-	probable CMP-binding factor	
24	 26.70       36054..37214    	 -	386	18309006	CPE0024	-	-	conserved hypothetical protein	
25	 30.96       37407..38627    	 +	406	18309007	pepT	-	-	probable aminotripeptidase	
26	 30.37       38733..39608    	 -	291	18309008	CPE0026	-	-	conserved hypothetical protein	
27	 24.56 -1    40045..41184    	 +	379	18309009	CPE0027	-	-	hypothetical protein	
28	 28.02       41300..42184    	 -	294	18309010	psdD	-	-	probable phosphatidylserine decarboxylase precursor	
29	 25.79       42348..42917    	 +	189	18309011	CPE0029	-	-	probable transcription regulator	
30	 30.17       43192..44457    	 +	421	18309012	hlyA	-	-	probable hemolysin-related protein	
31	 34.26 +1    44460..44891    	 +	143	18309013	CPE0031	-	-	conserved hypothetical protein	
32	 27.23       44954..45412    	 +	152	18309014	CPE0032	-	-	hypothetical protein	
33	 21.31 -2    45536..45901    	 +	121	18309015	CPE0033	-	-	hypothetical protein	
34	 35.14 +1    46011..46673    	 +	220	18309016	CPE0034	-	-	hypothetical protein	
35	 31.77       46787..48259    	 -	490	18309017	yplC	-	-	conserved hypothetical protein	
36	 33.17 +1    48590..49786    	 +	398	18309018	plc	-	-	phospholipase C	
37	 27.40       49974..50900    	 +	308	18309019	cobW	-	-	probable cobalamin synthesis related protein	
38	 26.67       50920..51504    	 +	194	18309020	CPE0038	-	-	conserved hypothetical protein	
39	 29.42       51507..52400    	 +	297	18309021	CPE0039	-	-	conserved hypothetical protein	
40	 25.00 -1    52413..53132    	 +	239	18309022	CPE0040	-	-	hypothetical protein	
41	 29.66       53398..54186    	 +	262	18309023	CPE0041	-	-	probable prolipoprotein diacylglyceryl transferase	
42	 27.58       54959..55462    	 +	167	18309024	CPE0042	-	-	hypothetical protein	
43	 29.99       55899..57185    	 +	428	18309025	brnQ	-	-	sodium-coupled branched-chain amino acid carrier protein	
44	 22.63 -1    57339..57824    	 -	161	18309026	folA	-	-	probable dihydrofolate reductase	
45	 30.35       58015..59658    	 +	547	18309027	dnaX	-	-	DNA polymerase III gamma and tau subunits	
46	 38.35 +2    59770..60108    	 +	112	18309028	CPE0046	-	-	hypothetical protein	
47	 32.50       60206..60802    	 +	198	18309029	recR	-	-	DNA repair and genetic recombination protein	
48	 25.45 -1    61028..61306    	 +	92	18309030	CPE0048	-	-	hypothetical protein	
49	 27.60       61322..61600    	 +	92	18309031	CPE0049	-	-	hypothetical protein	
50	 23.25 -1    61875..63005    	 +	376	18309032	CPE0050	-	-	hypothetical protein	
51	 30.00       63169..63348    	 +	59	18309033	CPE0051	-	-	hypothetical protein	
52	 30.05       63417..63599    	 +	60	18309034	CPE0052	-	-	hypothetical protein	
53	 29.99       63763..64839    	 +	358	18309035	CPE0053	-	-	probable transaminase	
54	 28.26       64908..65813    	 +	301	18309036	serA	-	-	D-3-phosphoglycerate dehydrogenase	
55	 26.89       65960..67216    	 +	418	18309037	CPE0055	-	-	conserved hypothetical protein	
56	 34.34 +1    67272..67967    	 -	231	18309038	mtn	-	-	5'-methylthioadenosine/S-adenosylhomocysteine nuclosidase	
57	 31.36       68347..69108    	 +	253	18309039	CPE0057	-	-	conserved hypothetical protein	
58	 29.56       69399..70565    	 +	388	18309040	CPE0058	-	-	conserved hypothetical protein	
59	 26.30       70590..71528    	 +	312	18309041	CPE0059	-	-	probable ribosomal-protein (S5)-alanine N-acetyltransferase	
60	 29.40       71545..72231    	 +	228	18309042	dgk2	-	-	probable deoxyguanosine kinase	
61	 31.90       78534..79856    	 +	440	18309043	CPE0061	-	-	probable integral membrane transport protein	
62	 21.33 -2    79983..80132    	 +	49	18309044	CPE0062	-	-	hypothetical protein	
63	 28.69       80480..82504    	 +	674	18309045	glgB	-	-	amylase	
64	 29.54       82532..83980    	 +	482	18309046	glgA	-	-	glycogen synthase	
65	 30.46       84010..86445    	 +	811	18309047	glgP	-	-	glycogen phosphorylase	
66	 28.61       86541..88361    	 +	606	18309048	CPE0066	-	-	amylopullulanase	
67	 28.83       88416..88859    	 +	147	18309049	CPE0067	-	-	hypothetical protein	
68	 30.03       89069..90250    	 +	393	18309050	glgC	-	-	glucose-1-phosphate adenylyltransferase	
69	 26.11       90280..91386    	 +	368	18309051	glgD	-	-	glycogen biosynthesis protein	
70	 26.62       91449..91895    	 +	148	18309052	CPE0070	-	-	probable phosphotransbutyrylase	
71	 26.96       92062..93504    	 -	480	18309053	clsA	-	-	probable cardiolipin synthase	
72	 34.17 +1    93936..95492    	 +	518	18309054	CPE0072	-	-	conserved hypothetical protein	
73	 26.32      101425..102009   	 +	194	18309055	CPE0073	-	-	probable transcription antiterminator	
74	 27.51      101897..102274   	 +	125	18309056	CPE0074	-	-	probable transcription antiterminator	
75	 35.66 +1   102497..102754   	 -	85	18309057	CPE0075	-	-	hypothetical protein	
76	 33.09 +1   103447..104664   	 +	405	18309058	CPE0076	-	-	probable PTS system enzyme	
77	 28.49      104712..104897   	 +	61	18309059	CPE0077	-	-	hypothetical protein	
78	 23.31 -1   104966..105484   	 -	172	18309060	CPE0078	-	-	probable transcriptional regulator	
79	 30.80      111585..113675   	 +	696	18309061	fus	-	-	elongation factor G	
80	 24.05 -1   114098..114334   	 +	78	18309062	CPE0080	-	-	hypothetical protein	
81	 35.55 +1   114586..115533   	 +	315	18309063	glcK	-	-	probable glucose kinase	
82	 37.57 +2   116074..116616   	 +	180	18309064	CPE0082	-	-	conserved hypothetical protein	
83	 26.60      116949..117572   	 +	207	18309065	gpmA	-	-	probable phosphoglycerate mutase	
84	 26.72      117931..118701   	 -	256	18309066	iolR	-	-	transcription repressor of myo-inositol catabolism operon	
85	 32.38      119183..120337   	 +	384	18309067	mdh	-	-	probable alcohol dehydrogenase	
86	 34.87 +1   120344..121189   	 +	281	18309068	alf1	-	-	fructose-1,6-bisphosphate aldolase	
87	 32.25      121203..122219   	 +	338	18309069	iolC	-	-	myo-inositol catabolism protein	
88	 32.94 +1   122233..123000   	 +	255	18309070	iolB	-	-	myo-inositol catabolism protein	
89	 34.11 +1   123017..124936   	 +	639	18309071	iolD	-	-	myo-inositol catabolism protein	
90	 31.75      125006..126013   	 +	335	18309072	CPE0090	-	-	probable dehydrogenase	
91	 30.20      126132..127025   	 +	297	18309073	iolE	-	-	myo-inositol catabolism protein	
92	 32.70 +1   127107..128696   	 +	529	18309074	CPE0092	-	-	Na+/myo-inositol cotransporter	
93	 32.67 +1   128783..129832   	 +	349	18309075	CPE0093	-	-	probable dehydrogenase	
94	 31.75      130202..130960   	 +	252	18309076	CPE0094	-	-	conserved hypothetical protein	
95	 32.56      131191..131967   	 +	258	18309077	CPE0095	-	-	crotonase	
96	 35.27 +1   132070..133620   	 +	516	18309078	CPE0096	-	-	propionate CoA-transferase	
97	 33.51 +1   133724..134860   	 +	378	18309079	acdS	-	-	acyl-CoA dehydrogenase	
98	 28.77      135262..135612   	 -	116	18309080	CPE0098	-	-	conserved hypothetical protein	
99	 33.86 +1   136190..137320   	 +	376	18309081	gldA	-	-	glycerol dehydrogenase	
100	 33.10 +1   137346..139094   	 +	582	18309082	CPE0100	-	-	dihydroxyacetone kinase	

 
 29.13 MEAN 
 
 3.46  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.