IslandPathversion 1.0

IslandPath Analysis: Clostridium acetobutylicum ATCC824



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 31.08 STD DEV: 3.28
Clostridium acetobutylicum ATCC824 complete genome - 0..3940880
3672 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 31.39         467..1807     	 +	446	15893299	dnaA	CAC0001	L	DNA replication initiator protein, ATPase	
2	 27.79 -1     2064..3164     	 +	366	15893300	dnaN	CAC0002	L	DNA polymerase III beta subunit	
3	 30.43        3195..3401     	 +	68	15893301	-	CAC0003	S	Small conserved protein, ortholog of YAAA B.subtilis	
4	 27.20 -1     3447..4538     	 +	363	15893302	recF	CAC0004	L	RecF, ABC family ATPase	
5	 30.63        4489..4821     	 +	110	15893303	-	CAC0005	-	Uncharacterized small conserved protein, ortholog of YAAB B.subtilis	
6	 34.17        4844..6757     	 +	637	15893304	gyrB	CAC0006	L	DNA gyrase (topoisomerase II) B subunit	
7	 33.17        6783..9275     	 +	830	15893305	gyrA	CAC0007	L	DNA gyrase (topoisomerase II) A subunit	
8	 18.87 -2    14735..15211    	 +	158	15893306	-	CAC0008	-	Predicted HD superfamily hydrolase	
9	 28.88       15285..15800    	 +	171	15893307	-	CAC0009	R	Uncharacterized conserved protein, ortholog of YRXA B.subtilis	
10	 28.48       15826..18546    	 +	906	15893308	-	CAC0010	S	Uncharacterized conserved protein, possible metal-binding	
11	 25.67 -1    18653..19513    	 +	286	15893309	-	CAC0011	-	Uncharacterized conserved of ErfK family	
12	 27.78 -1    19543..20946    	 +	467	15893310	-	CAC0012	R	Predicted dehydrogenase with iron-sulfur domain	
13	 30.74       20956..21186    	 +	76	15893311	-	CAC0013	S	Uncharacterized small conserved protein, ortholog of T.maritima (4981999) and P.abyssi (5457704)	
14	 35.11 +1    21619..22689    	 +	356	15893312	-	CAC0014	E	Aminotransferase	
15	 34.53 +1    22715..23632    	 +	305	15893313	serA	CAC0015	E	D-3-phosphoglycerate dehydrogenase	
16	 30.20       23709..24953    	 +	414	15893314	-	CAC0016	-	Related to HTH domain of SpoOJ/ParA/ParB/repB family, involved in chromosome partitioning	
17	 32.63       24976..26253    	 +	425	15893315	serS	CAC0017	J	Seryl-tRNA synthetase	
18	 33.83       26363..26965    	 +	200	15893316	-	CAC0018	R	Putative NADPH-quinone reductase, YabF family	
19	 28.22       27017..27622    	 -	201	15893317	-	CAC0019	K	Transcriptional regulator, AcrR family	
20	 31.48       27787..30426    	 +	879	15893318	-	CAC0020	S	MDR-type permease	
21	 34.12       30670..31944    	 +	424	15893319	serS	CAC0021	J	Seryl-tRNA synthetase (serine-tRNA ligase)	
22	 33.06       32013..33095    	 -	360	15893320	asd	CAC0022	E	Aspartate-semialdehyde dehydrogenase	
23	 30.67       33214..34113    	 +	299	15893321	-	CAC0023	K	Transcriptional regulator, LysR family	
24	 28.74       34540..35910    	 +	456	15893322	-	CAC0024	-	Membrane protein, related to Actinobacillus protein (1944168)	
25	 29.50       36200..36721    	 +	173	15893323	dcd	CAC0025	F	Deoxycytidine triphosphate deaminase	
26	 27.48 -1    36743..37357    	 +	204	15893324	-	CAC0026	-	Hypothetical protein	
27	 31.26       37376..38050    	 +	224	15893325	pyrE	CAC0027	F	Orotate phosphoribosyltranspherase	
28	 34.31       38101..39849    	 -	582	15893326	hydA	CAC0028	C	Hydrogene dehydrogenase	
29	 31.48       40092..40793    	 +	233	15893327	-	CAC0029	S	Distantly related to cell wall-associated hydrolases, similar to yycO Bacillus subtilis	
30	 28.91       40771..41832    	 +	353	15893328	-	CAC0030	-	Hypothetical protein	
31	 30.62       41890..42774    	 -	294	15893329	psdD	CAC0031	I	Phosphatidylserine decarboxilase	
32	 31.05       42932..43501    	 +	189	15893330	-	CAC0032	K	Transcriptional regulator TetR/AcrR family	
33	 30.39       43538..45136    	 -	532	15893331	-	CAC0033	R	ABC1 family protein kinase	
34	 29.08       45291..45596    	 -	101	15893332	-	CAC0034	-	Hypothetical protein	
35	 29.03       46266..47078    	 +	270	15893333	-	CAC0035	T	Serine/threonine phosphatase (inactivated protein)	
36	 26.87 -1    47106..48512    	 +	468	15893334	-	CAC0036	T	Predicted membrane protein, containing FHA domain	
37	 28.36       48546..49631    	 +	361	15893335	-	CAC0037	D	MinD family ATPase from ParA/SOJ subfamily	
38	 28.05       49650..49895    	 +	81	15893336	-	CAC0038	-	Hypothetical protein	
39	 30.96       49939..54573    	 +	1544	15893337	-	CAC0039	T	DNA segregation ATPase FtsK/SpoIIIE family protein, contains FHA domain	
40	 34.35       54723..55016    	 +	97	15893338	-	CAC0040	-	Uncharacterized small conserved protein, homolog of yfjA/yukE B.subtilis	
41	 33.58       55224..55634    	 +	136	15893339	-	CAC0041	-	Uncharacterized small conserved protein, homolog of yfjA/yukE B.subtilis	
42	 33.82       55665..56909    	 +	414	15893340	-	CAC0042	-	Hypothetical protein, CF-1 family	
43	 25.29 -1    56937..57458    	 +	173	15893341	-	CAC0043	-	Hypothetical protein, CF-3 family	
44	 26.81 -1    57468..57743    	 +	91	15893342	-	CAC0044	-	Predicted membrane protein	
45	 29.44       57977..59311    	 +	444	15893343	-	CAC0045	R	TPR-repeat-containing protein	
46	 28.44       59337..59663    	 +	108	15893344	-	CAC0046	-	Hypothetical protein, CF-2 family	
47	 33.33       59688..59999    	 +	103	15893345	-	CAC0047	-	Uncharacterized small conserved protein, homolog of yfjA/yukE B.subtilis	
48	 31.10       60030..60566    	 +	178	15893346	-	CAC0048	-	Hypothetical protein, CF-17 family	
49	 30.56       60592..61167    	 +	191	15893347	-	CAC0049	-	Hypothetical protein, CF-17 family	
50	 25.62 -1    61342..61665    	 +	107	15893348	-	CAC0050	-	Hypothetical protein, CF-3 family K28	
51	 25.87 -1    61662..61862    	 +	66	15893349	-	CAC0051	-	Hypothetical protein, CF-3 family	
52	 29.22       62070..62531    	 +	153	15893350	-	CAC0052	-	Hypothetical protein, CF-18 family	
53	 27.93       62623..63048    	 -	141	15893351	-	CAC0053	-	Hypothetical protein	
54	 33.16       63793..64383    	 +	196	15893352	-	CAC0055	-	Uncharacterized predicted metal-binding protein, ortholog of Streptomyces (2808777)	
55	 29.58       64672..65124    	 +	150	15893353	-	CAC0056	-	Hypothetical protein	
56	 31.29       65121..66002    	 +	293	15893354	-	CAC0057	-	Hypothetical protein	
57	 31.23       66024..66356    	 +	110	15893355	-	CAC0058	-	Hypothetical protein	
58	 31.14       66377..66649    	 +	90	15893356	-	CAC0059	-	Hypothetical protein	
59	 30.38       66803..67411    	 +	202	15893357	-	CAC0060	-	Predicted membrane protein	
60	 32.85       67475..69958    	 +	827	15893358	-	CAC0061	-	Phage-related protein, gp16	
61	 32.33       69961..70656    	 +	231	15893359	-	CAC0062	-	Phage-related protein	
62	 32.54       70657..75594    	 +	1645	15893360	-	CAC0063	-	Phage-related protein	
63	 27.34 -1    75609..75875    	 +	88	15893361	-	CAC0064	-	Hypothetical protein	
64	 30.45       76018..76398    	 +	126	15893362	-	CAC0065	-	Hypothetical protein	
65	 30.75       76521..77294    	 +	257	15893363	-	CAC0066	R	ABC transporter, ATP-binding protein	
66	 26.61 -1    77298..77996    	 +	232	15893364	-	CAC0067	R	(FS) similar to ABC transporter (permease), YXDM B.subtilis ortholog	
67	 24.75 -1    78012..79211    	 +	399	15893365	-	CAC0068	-	(FS) similar to ABC transporter (permease), YXDM B.subtilis ortholog	
68	 27.95       79405..79794    	 +	129	15893366	-	CAC0069	P	Predicted iron-binding protein, hemerythrin	
69	 28.59       79854..80822    	 -	322	15893367	-	CAC0070	-	Hypothetical protein	
70	 33.47       81020..81739    	 +	239	15893368	-	CAC0071	D	Uncharacterized conserved protein, YTFE E.coli ortholog	
71	 38.03 +2    81787..82020    	 -	77	15893369	-	CAC0072	-	Hypothetical protein	
72	 35.42 +1    82288..83100    	 +	270	15893370	-	CAC0073	S	Uncharacterized protein, ortholog of YYBG B.subtilis	
73	 34.77 +1    84396..84743    	 -	115	15893371	-	CAC0075	-	Ferredoxin	
74	 32.89       84877..85788    	 +	303	15893372	-	CAC0076	G	Predicted permease	
75	 25.55 -1    85766..86497    	 -	243	15893373	-	CAC0077	R	Conserved membrane protein, possible homolog of CAAX-like membrane endopeptidase	
76	 28.10       86728..87357    	 +	209	15893374	agrB	CAC0078	-	Accessory gene regulator protein B	
77	 31.52       87326..87490    	 +	54	15893375	-	CAC0079	-	Hypothetical protein	
78	 28.87       87617..88960    	 +	447	15893376	agrC	CAC0080	T	Histidine kinase-like ATPase	
79	 26.45 -1    88953..89678    	 +	241	15893377	agrA	CAC0081	K	Accessory gene regulator protein A	
80	 28.00       89767..91827    	 +	686	15893378	-	CAC0082	-	Predicted membrane protein	
81	 31.00       92169..92768    	 +	199	15893379	-	CAC0083	T	PemK family of DNA-binding proteins	
82	 33.54       93048..93524    	 +	158	15893380	-	CAC0084	L	MutT/Nudix family hydrolase	
83	 33.33       93588..93767    	 +	59	15893381	-	CAC0085	-	Hypothetical protein	
84	 33.24       93773..94852    	 -	359	15893382	-	CAC0086	G	Muconate cycloisomerase related protein, ortholog of YKGB B.subtilis	
85	 32.88       94954..95832    	 +	292	15893383	-	CAC0087	P	Predicted Co/Zn/Cd cation transporter	
86	 31.70       95918..96406    	 +	162	15893384	-	CAC0088	O	Peptide methionine sulfoxide reductase	
87	 33.02       96440..97396    	 +	318	15893385	serA	CAC0089	E	D-3 phosphoglycerate dehydrogenase	
88	 30.61       97839..98720    	 +	293	15893386	-	CAC0090	G	Xylanase/chitin deacetylase, NodB family	
89	 34.12       99393..100406   	 +	337	15893387	ilvC	CAC0091	E	Ketol-acid reductoisomerase	
90	 33.12      100675..101133   	 +	152	15893388	-	CAC0092	S	Uncharacterized predicted membrane protein, YTWI B.subtilis ortholog	
91	 28.06      101128..102000   	 -	290	15893389	-	CAC0093	K	Transcriptional regulators, LysR family	
92	 33.53      102143..103693   	 +	516	15893390	-	CAC0094	P	Ferredoxin-nitrite reductase	
93	 30.65      103870..105060   	 +	396	15893391	hemA	CAC0095	H	Glutamil-tRNA reductase	
94	 27.93      105024..105671   	 +	215	15893392	hemW	CAC0096	H	Precorrin-2 dehydrogenase	
95	 35.73 +1   105680..106555   	 +	291	15893393	hemC	CAC0097	H	Hydroxymrthylbilane syntase (porphobilinogen deaminase)	
96	 33.88      106555..108027   	 +	490	15893394	hemD	CAC0098	H	Uroporphyrinogen III syntase	
97	 35.15 +1   108017..109285   	 +	422	15893395	hemL	CAC0099	H	Glutamate-1-semialdehyde aminotransferase	
98	 34.48 +1   109303..110265   	 +	320	15893396	hemB	CAC0100	H	Delta-aminolevulinic acid dehydratase (porphobilinogen synthase)	
99	 26.45 -1   110750..112144   	 +	464	15893397	-	CAC0101	-	Methyl-accepting chemotaxis protein	
100	 33.01      112504..113733   	 +	409	15893398	-	CAC0102	E	O-acetylhomoserine sulfhydrylase	

 
 31.08 MEAN 
 
 3.28  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.