IslandPath Analysis: Campylobacter jejuni NCTC11168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.55   STD DEV: 3.69
Campylobacter jejuni complete genome - 0..1641481
1634 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 30.08           1..1323     	 +	440	15791400	dnaA	Cj0001	L	chromosomal replication initiator protein	
2	 25.94 -1     1483..2550     	 +	355	15791401	dnaN	Cj0002	L	DNA polymerase III, beta chain	
3	 33.16        2579..4888     	 +	769	15791402	gyrB	Cj0003	L	DNA gyrase subunit B	
4	 31.87        4916..5257     	 -	113	15791403	Cj0004c	Cj0004c	-	putative periplasmic protein	
5	 32.85        5260..6498     	 -	412	15791404	Cj0005c	Cj0005c	R	putative molybdenum containing oxidoreductase	
6	 31.88        6703..8010     	 +	435	15791405	Cj0006	Cj0006	R	putative integral membrane protein	
7	 34.67 +1     8144..12634    	 +	1496	15791406	gltB	Cj0007	E	glutamate synthase (NADPH) large subunit	
8	 24.60 -1    12644..14395    	 +	583	15791407	Cj0008	Cj0008	S	hypothetical protein Cj0008	
9	 34.72 +1    14398..15843    	 +	481	15791408	gltD	Cj0009	E	glutamate synthase (NADPH) small subunit	
10	 32.12       15844..16419    	 -	191	15791409	rnhB	Cj0010c	L	ribonuclease HII	
11	 27.08       16452..16691    	 -	79	15791410	Cj0011c	Cj0011c	L	putative non-specific DNA binding protein	
12	 35.80 +1    16756..17403    	 -	215	15791411	Cj0012c	Cj0012c	C	non-haem iron protein	
13	 36.97 +1    17563..19239    	 +	558	15791412	ilvD	Cj0013	E	dihydroxy-acid dehydratase	
14	 35.05 +1    19251..19775    	 -	174	15791413	Cj0014c	Cj0014c	S	putative integral membrane protein	
15	 32.36       19867..21093    	 -	408	15791414	Cj0015c	Cj0015c	R	hypothetical protein Cj0015c	
16	 34.22       21159..21833    	 +	224	15791415	Cj0016	Cj0016	R	putative transcriptional regulatory protein	
17	 33.33       21854..23380    	 -	508	15791416	Cj0017c	Cj0017c	O	putative ATP /GTP binding protein	
18	 31.55       23392..23559    	 -	55	15791417	Cj0018c	Cj0018c	-	small hydrophobic protein	
19	 27.66       23665..25443    	 -	592	15791418	Cj0019c	Cj0019c	N	MCP-domain signal transduction protein	
20	 31.91       25433..26347    	 -	304	15791419	Cj0020c	Cj0020c	P	cytochrome C551 peroxidase	
21	 31.97       26411..27289    	 -	292	15791420	Cj0021c	Cj0021c	Q	hypothetical protein Cj0021c	
22	 29.46       27402..28304    	 -	300	15791421	Cj0022c	Cj0022c	J	putative ribosomal pseudouridine synthase	
23	 34.31 +1    28382..29710    	 +	442	15791422	purB	Cj0023	F	adenylosuccinate lyase	
24	 33.67       29726..32095    	 +	789	15791423	nrdA	Cj0024	F	ribonucleoside-diphosphate reductase alpha chain	
25	 31.46       32134..33519    	 -	461	15791424	Cj0025c	Cj0025c	R	putative transmembrane symporter	
26	 33.65       33639..34262    	 -	207	15791425	Cj0026c	Cj0026c	F	hypothetical protein Cj0026c	
27	 34.38 +1    34382..36013    	 +	543	15791426	pyrG	Cj0027	F	CTP synthase	
28	 29.83       36000..37571    	 +	523	15791427	recJ	Cj0028	L	putative single-stranded-DNA-specific exonuclease	
29	 34.24       37667..38662    	 +	331	15791428	ansA	Cj0029	E	cytoplasmic L-asparaginase	
30	 20.53 -2    44966..46363    	 +	465	15791429	Cj0030	Cj0030	-	hypothetical protein Cj0030	
31	 30.38       46424..49027    	 +	867	15791430	Cj0031	Cj0031	L	putative type IIS restriction /modification enzyme, N-terminal half	
32	 31.09       48996..50156    	 +	386	15791431	Cj0032	Cj0032	L	putative type IIS restriction /modification enzyme, C-terminal half	
33	 23.74 -1    50156..51937    	 +	593	15791432	Cj0033	Cj0033	-	putative integral membrane protein	
34	 32.34       51967..52668    	 -	233	15791433	Cj0034c	Cj0034c	S	putative periplasmic protein	
35	 35.33 +1    52665..53867    	 -	400	15791434	Cj0035c	Cj0035c	G	putative efflux protein	
36	 31.04       53970..55319    	 +	449	15791435	Cj0036	Cj0036	-	hypothetical protein Cj0036	
37	 36.59 +1    55343..56386    	 -	347	15791436	Cj0037c	Cj0037c	C	putative cytochrome c	
38	 25.00 -1    56564..57211    	 -	215	15791437	Cj0038c	Cj0038c	-	putative membrane protein	
39	 37.26 +1    57211..59019    	 -	602	15791438	typA	Cj0039c	N	GTP-binding protein typA homolog	
40	 23.15 -2    59154..59477    	 +	107	15791439	Cj0040	Cj0040	-	hypothetical protein Cj0040	
41	 26.38 -1    59493..61289    	 +	598	15791440	Cj0041	Cj0041	-	hypothetical protein Cj0041	
42	 36.50 +1    61343..62227    	 +	294	15791441	flgD	Cj0042	N	putative flagellar hook assembly protein	
43	 34.07       62231..63868    	 +	545	15791442	flgE	Cj0043	N	flagellar hook protein flgE	
44	 25.53 -1    63872..65743    	 -	623	15791443	Cj0044c	Cj0044c	-	hypothetical protein Cj0044c	
45	 28.08       65744..66466    	 -	240	15791444	Cj0045c	Cj0045c	P	putative iron-binding protein	
46	 32.74       68532..69548    	 -	338	15791445	trmU	Cj0053c	J	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	
47	 31.19       69548..70153    	 -	201	15791446	Cj0054c	Cj0054c	R	hypothetical protein Cj0054c	
48	 28.48       70274..71098    	 -	274	15791447	Cj0055c	Cj0055c	-	hypothetical protein Cj0055c	
49	 32.85       71155..71571    	 -	138	15791448	Cj0056c	Cj0056c	-	hypothetical protein Cj0056c	
50	 31.11       72005..72859    	 +	284	15791449	Cj0057	Cj0057	-	putative periplasmic protein	
51	 28.83       72844..73443    	 +	199	15791450	Cj0058	Cj0058	R	putative periplasmic protein	
52	 33.10       73492..74334    	 -	280	15791451	fliY	Cj0059c	N	putative flagellar motor switch protein	
53	 33.80       74331..75410    	 -	359	15791452	fliM	Cj0060c	N	flagellar motor switch protein	
54	 32.50       75410..76126    	 -	238	15791453	fliA	Cj0061c	K	putative RNA polymerase sigma factor for flagellar operon	
55	 26.89       76083..76439    	 -	118	15791454	Cj0062c	Cj0062c	-	putative integral membrane protein	
56	 31.26       76458..77324    	 -	288	15791455	Cj0063c	Cj0063c	D	putative ATP-binding protein	
57	 30.58       77317..78771    	 -	484	15791456	flhF	Cj0064c	N	flagellar biosynthesis protein	
58	 30.59       78781..79254    	 -	157	15791457	folK	Cj0065c	H	putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	
59	 35.21 +1    79257..79736    	 -	159	15791458	aroQ	Cj0066c	E	3-dehydroquinate dehydratase	
60	 28.86       79827..81056    	 +	409	15791459	Cj0067	Cj0067	F	hypothetical protein Cj0067	
61	 33.00       81044..81940    	 +	298	15791460	pspA	Cj0068	N	protease	
62	 34.30 +1    82019..83050    	 +	343	15791461	Cj0069	Cj0069	-	hypothetical protein Cj0069	
63	 25.16 -1    83047..83205    	 -	52	15791462	Cj0070c	Cj0070c	-	very hypothetical protein Cj0070c	
64	 30.75       84087..84743    	 -	218	15791463	Cj0073c	Cj0073c	S	hypothetical protein Cj0073c	
65	 34.79 +1    84736..86175    	 -	479	15791464	Cj0074c	Cj0074c	C	putative iron-sulfur protein	
66	 33.20       86172..86912    	 -	246	15791465	Cj0075c	Cj0075c	C	putative oxidoreductase iron-sulfur subunit	
67	 35.12 +1    87036..88718    	 -	560	15791466	lctP	Cj0076c	C	L-lactate permease	
68	 31.23       88890..89459    	 -	189	15791467	cdtC	Cj0077c	-	cytolethal distending toxin	
69	 36.34 +1    89470..90267    	 -	265	15791468	cdtB	Cj0078c	-	cytolethal distending toxin	
70	 34.32 +1    90264..91070    	 -	268	15791469	cdtA	Cj0079c	-	cytolethal distending toxin	
71	 21.48 -2    91147..91416    	 +	89	15791470	Cj0080	Cj0080	-	putative membrane protein	
72	 34.68 +1    91417..92979    	 +	520	15791471	cydA	Cj0081	C	cytochrome bd oxidase subunit I	
73	 31.29       92979..94103    	 +	374	15791472	cydB	Cj0082	C	cytochrome bd oxidase subunit II	
74	 26.58 -1    94297..94992    	 -	231	15791473	Cj0085c	Cj0085c	M	putative amino acid recemase	
75	 28.88       95108..95803    	 -	231	15791474	ung	Cj0086c	L	uracil-DNA glycosylase	
76	 33.26       96074..97480    	 +	468	15791475	aspA	Cj0087	E	aspartate ammonia-lyase	
77	 37.22 +1    97496..98833    	 +	445	15791476	dcuA	Cj0088	R	putative anaerobic C4-dicarboxylate transporter	
78	 27.68       98941..100302   	 +	453	15791477	Cj0089	Cj0089	S	putative lipoprotein	
79	 26.83 -1   100312..100680   	 +	122	15791478	Cj0090	Cj0090	-	putative lipoprotein	
80	 34.78 +1   100704..101327   	 +	207	15791479	Cj0091	Cj0091	N	putative lipoprotein	
81	 31.17      101410..102747   	 +	445	15791480	Cj0092	Cj0092	-	putative periplasmic protein	
82	 32.50      102757..103959   	 +	400	15791481	Cj0093	Cj0093	-	putative periplasmic protein	
83	 35.28 +1   104118..104426   	 +	102	15791482	rplU	Cj0094	J	50S ribosomal protein L21	
84	 37.25 +1   104437..104691   	 +	84	15791483	rpmA	Cj0095	J	50S ribosomal protein L27	
85	 35.90 +1   104798..105850   	 +	350	15791484	Cj0096	Cj0096	R	putative GTP-binding protein	
86	 32.28      105955..106710   	 +	251	15791485	proB	Cj0097	E	putative glutamate 5-kinase	
87	 32.46      106784..107701   	 +	305	15791486	fmt	Cj0098	J	methionyl-tRNA formyltransferase	
88	 29.36      107664..108317   	 +	217	15791487	birA	Cj0099	H	putative biotin--[acetyl-CoA-carboxylase] synthetase	
89	 30.92      108314..109099   	 +	261	15791488	Cj0100	Cj0100	D	parA family protein	
90	 26.40 -1   109105..109941   	 +	278	15791489	Cj0101	Cj0101	K	parB family protein	
91	 28.40      110002..110427   	 +	141	15791490	atpF'	Cj0102	C	ATP synthase F0 sector B' subunit	
92	 25.93 -1   110438..110950   	 +	170	15791491	atpF	Cj0103	C	ATP synthase F0 sector B subunit	
93	 21.84 -2   110953..111474   	 +	173	15791492	atpH	Cj0104	C	ATP synthase F1 sector delta subunit	
94	 35.19 +1   111488..112993   	 +	501	15791493	atpA	Cj0105	C	ATP synthase F1 sector alpha subunit	
95	 28.93      113002..113886   	 +	294	15791494	atpG	Cj0106	C	ATP synthase F1 sector gamma subunit	
96	 35.41 +1   113912..115309   	 +	465	15791495	atpD	Cj0107	C	ATP synthase F1 sector beta subunit	
97	 35.13 +1   115313..115702   	 +	129	15791496	atpC	Cj0108	C	ATP synthase F1 sector epsilon subunit	
98	 29.73      115702..116256   	 +	184	15791497	exbB3	Cj0109	N	exbB\tolQ family transport protein	
99	 28.46      116265..116654   	 +	129	15791498	exbD3	Cj0110	N	exbD\tolR family transport protein	
100	 28.72      116657..117436   	 +	259	15791499	Cj0111	Cj0111	-	periplasmic protein	

 
 30.55 MEAN 
 
 3.69  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.