IslandPath Analysis: Chlorobium tepidum TLS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.49   STD DEV: 6.35
Chlorobium tepidum TLS complete genome - 0..2154946
2252 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 50.22           2..1126     	 -	374	21645890	dnaN	CT0001	-	DNA polymerase III, beta subunit	
2	 53.51        1398..2879     	 -	493	21645891	dnaA	CT0002	-	chromosomal replication initiator protein DnaA	
3	 50.62        3285..3446     	 +	53	21645892	rpmH	CT0003	-	ribosomal protein L34	
4	 54.62        3494..3958     	 +	154	21645893	-	CT0004	-	ribonuclease P protein component, putative	
5	 49.60        4017..4268     	 +	83	21645894	-	CT0005	-	conserved hypothetical protein	
6	 57.59        4268..6040     	 +	590	21645895	-	CT0006	-	Oxa1/60 kDa IMP family protein	
7	 57.96        6047..6643     	 +	198	21645896	-	CT0007	-	Pap2 superfamily protein	
8	 66.88 +1     6640..7563     	 +	307	21645897	-	CT0008	-	Rok family protein	
9	 60.19        7593..9044     	 +	483	21645898	-	CT0009	-	RNA methyltransferase, TrmA family	
10	 58.15        9171..9839     	 -	222	21645899	tal	CT0010	-	transaldolase	
11	 58.59        9849..10901    	 -	350	21645900	-	CT0011	-	deoxyhypusine synthase, putative	
12	 39.58 -2    10984..11079    	 +	31	21645902	-	CT0012	-	hypothetical protein	
13	 59.03       11570..12604    	 +	344	21645903	trpS	CT0013	-	tryptophanyl-tRNA synthetase	
14	 61.42       12601..13305    	 +	234	21645904	-	CT0014	-	hydrolase, haloacid dehalogenase-like family	
15	 59.12       13318..14973    	 +	551	21645905	argS	CT0015	-	arginyl-tRNA synthetase	
16	 57.31       15001..15588    	 -	195	21645906	nadD	CT0016	-	nicotinate-nucleotide adenyltransferase, putative	
17	 53.44       15585..16733    	 -	382	21645907	-	CT0017	-	hypothetical protein	
18	 48.90 -1    16990..17535    	 -	181	21645908	atpH	CT0018	-	ATP synthase F1, delta subunit	
19	 51.70       17554..18081    	 -	175	21645909	atpF	CT0019	-	ATP synthase F0, B subunit	
20	 59.46       18167..18388    	 -	73	21645910	atpE	CT0020	-	ATP synthase F0, C subunit	
21	 54.99       18473..19303    	 -	276	21645911	atpB-2	CT0021	-	ATP synthase F0, A subunit	
22	 47.94 -1    19568..19882    	 +	104	21645912	-	CT0022	-	hypothetical protein	
23	 52.02       19930..20250    	 -	106	21645913	-	CT0023	-	hypothetical protein	
24	 58.48       20271..21260    	 -	329	21645914	galE	CT0024	-	UDP-glucose 4-epimerase	
25	 48.89 -1    21468..21602    	 +	44	21645916	-	CT0025	-	hypothetical protein	
26	 61.48       21622..22392    	 +	256	21645917	-	CT0026	-	conserved hypothetical protein	
27	 54.76       22376..22585    	 -	69	21645918	-	CT0027	-	hypothetical protein	
28	 58.01       22801..23817    	 +	338	21645919	-	CT0028	-	CrtF-related protein	
29	 62.11 +1    23975..25270    	 -	431	21645920	cat2	CT0029	-	4-hydroxybutyrate coenzyme A transferase	
30	 60.15       25421..26725    	 -	434	21645922	ftsZ	CT0030	-	cell division protein FtsZ	
31	 58.33       26772..28115    	 -	447	21645923	ftsA	CT0031	-	cell division protein FtsA	
32	 59.21       28112..29050    	 -	312	21645924	-	CT0032	-	FtsQ protein, putative	
33	 64.36 +1    29087..30514    	 -	475	21645925	murC	CT0033	-	UDP-N-acetylmuramate-alanine ligase	
34	 64.29 +1    30518..31612    	 -	364	21645926	murG	CT0034	-	UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	
35	 59.47       31609..32775    	 -	388	21645927	ftsW	CT0035	-	cell division protein, FtsW/RodA/SpoVE family	
36	 65.81 +1    32835..34232    	 -	465	21645929	murD	CT0036	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase	
37	 54.83       34234..35340    	 -	368	21645930	mraY	CT0037	-	phospho-N-acetylmuramoyl-pentapeptide-transferase	
38	 64.36 +1    35348..36778    	 -	476	21645931	murF	CT0038	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase	
39	 65.88 +1    36797..38323    	 -	508	21645932	murE	CT0039	-	UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase	
40	 59.92       38323..40278    	 -	651	21645933	ftsI	CT0040	-	penicillin-binding protein 3	
41	 53.42       40306..40773    	 -	155	21645934	-	CT0041	-	hypothetical protein	
42	 58.93       40793..41749    	 -	318	21645935	-	CT0042	-	conserved hypothetical protein	
43	 59.83       41754..42221    	 -	155	21645936	-	CT0043	-	conserved hypothetical protein	
44	 51.85       42299..42838    	 +	179	21645937	-	CT0044	-	hypothetical protein	
45	 55.25       42801..43667    	 +	288	21645938	-	CT0045	-	hypothetical protein	
46	 58.53       43710..45392    	 -	560	21645939	fadD	CT0046	-	long-chain-fatty-acid-CoA ligase	
47	 62.84 +1    45467..46747    	 -	426	21645941	bioA	CT0047	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase	
48	 62.08 +1    46744..47463    	 -	239	21645942	bioD	CT0048	-	dethiobiotin synthase	
49	 63.73 +1    47436..48218    	 -	260	21645943	bioC	CT0049	-	biotin synthesis protein, putative	
50	 64.40 +1    48215..48877    	 -	220	21645944	-	CT0050	-	conserved hypothetical protein	
51	 65.19 +1    48892..50112    	 -	406	21645945	bioF-2	CT0051	-	8-amino-7-oxononanoate synthase	
52	 63.57 +1    50109..51110    	 -	333	21645946	bioB	CT0052	-	biotin synthetase	
53	 62.97 +1    51107..52108    	 -	333	21645947	birA	CT0053	-	BirA bifunctional protein	
54	 57.21       52338..53987    	 -	549	21645948	amiB	CT0054	-	N-acetylmuramoyl-L-alanine amidase	
55	 58.96       54413..56812    	 +	799	21645949	topA	CT0055	-	DNA topoisomerase I	
56	 60.64       56948..59086    	 -	712	21645951	feoB-2	CT0056	-	ferrous iron transport protein B	
57	 60.54       59083..59376    	 -	97	21645952	feoA-2	CT0057	-	ferrous iron transport protein A	
58	 58.40       59511..59897    	 -	128	21645953	-	CT0058	-	Hit family protein	
59	 52.11       59924..60658    	 -	244	21645954	-	CT0059	-	hypothetical protein	
60	 59.62       60635..61315    	 +	226	21645955	-	CT0060	-	hypothetical protein	
61	 63.01 +1    61355..62311    	 -	318	21645956	-	CT0061	-	hypothetical protein	
62	 61.47       62295..63218    	 -	307	21645957	-	CT0062	-	conserved hypothetical protein	
63	 60.36       63202..64200    	 -	332	21645958	-	CT0063	-	magnesium chelatase, subunit I, putative	
64	 60.64       64534..65595    	 +	353	21645959	gcp	CT0064	-	O-sialoglycoprotein endopeptidase	
65	 55.65       65703..66056    	 +	117	21645960	-	CT0065	-	conserved hypothetical protein	
66	 58.13       66066..67166    	 +	366	21645961	carA	CT0066	-	carbamoyl-phosphate synthase, small subunit	
67	 55.91       67505..67783    	 +	92	21645963	-	CT0067	-	hemagglutinin-related protein	
68	 56.67       68072..68701    	 +	209	21645964	-	CT0068	-	hemagglutinin-related protein	
69	 52.94       68828..68929    	 -	33	21645965	-	CT0069	-	hypothetical protein	
70	 60.96       68965..70104    	 +	379	21645966	-	CT0070	-	aminotransferase, class V	
71	 62.19 +1    70164..70811    	 +	215	21645967	-	CT0071	-	hypothetical protein	
72	 62.66 +1    70817..72238    	 +	473	21645968	-	CT0072	-	BchE/P-methylase family protein	
73	 60.19       72338..72769    	 +	143	21645969	-	CT0073	-	cytochrome c-555, membrane-bound	
74	 39.72 -2    72824..72964    	 +	46	21645970	-	CT0074	-	hypothetical protein	
75	 56.88       72989..73315    	 +	108	21645971	-	CT0075	-	cytochrome c-555	
76	 52.06       73469..73735    	 +	88	21645972	-	CT0076	-	conserved hypothetical protein	
77	 61.42       73755..74555    	 +	266	21645973	proC	CT0077	-	pyrroline-5-carboxylate reductase	
78	 58.44       74555..75916    	 +	453	21645974	-	CT0078	-	hypothetical protein	
79	 58.33       75939..76742    	 -	267	21645975	ugpQ	CT0079	-	glycerophosphoryl diester phosphodiesterase	
80	 49.02 -1    76871..77176    	 -	101	21645976	-	CT0080	-	hypothetical protein	
81	 56.50       77409..77585    	 +	58	21645978	-	CT0081	-	Ric1 protein	
82	 58.97       77774..78202    	 +	142	21645979	-	CT0082	-	conserved hypothetical protein	
83	 62.01 +1    78362..78919    	 +	185	21645980	pyrE	CT0083	-	orotate phosphoribosyltransferase	
84	 61.25       78928..79794    	 +	288	21645981	tyrA	CT0084	-	prephenate dehydrogenase	
85	 57.16       79791..80642    	 +	283	21645982	-	CT0085	-	conserved hypothetical protein	
86	 61.90 +1    80671..82158    	 +	495	21645983	-	CT0086	-	hypothetical protein	
87	 61.78       82260..82832    	 -	190	21645984	-	CT0087	-	conserved hypothetical protein	
88	 60.14       82845..83687    	 -	280	21645985	kdsA	CT0088	-	2-dehydro-3-deoxyphosphooctonate aldolase	
89	 60.14       83816..85132    	 +	438	21645986	clpB-2	CT0089	-	ATP-dependent Clp protease, ATP-binding subunit ClpB	
90	 58.00       85187..86305    	 +	372	21645987	-	CT0090	-	glycosyl hydrolase, family 3	
91	 58.94       86302..86793    	 +	163	21645988	sixA	CT0091	-	phosphohistidine phosphatase SixA	
92	 62.38 +1    86889..87890    	 -	333	21645989	gpsA	CT0092	-	glycerol-3-phosphate dehydrogenase, NAD-dependent	
93	 57.94       87904..88602    	 -	232	21645990	-	CT0093	-	conserved hypothetical protein	
94	 60.40       88645..89634    	 -	329	21645991	purM	CT0094	-	phosphoribosylformylglycinamidine cyclo-ligase	
95	 59.09       89683..91095    	 -	470	21645992	lysC	CT0095	-	aspartokinase	
96	 39.81 -2    91089..91196    	 -	35	21645993	-	CT0096	-	hypothetical protein	
97	 56.02       91182..91829    	 +	215	21645994	-	CT0097	-	NLP/P60 family protein	
98	 58.51       91963..92832    	 +	289	21645996	-	CT0098	-	ribosomal protein L11 methyltransferase, putative	
99	 62.74 +1    92946..93938    	 +	330	21645997	-	CT0099	-	exopolyphosphatase, putative	
100	 61.75       93942..95141    	 -	399	21645998	-	CT0100	-	conserved hypothetical protein	

 
 55.49 MEAN 
 
 6.35  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.