IslandPathversion 1.0 




IslandPath Analysis: Chlamydia muridarum



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.59   STD DEV: 2.58

Chlamydia muridarum, complete genome - 0..1069411
909 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 40.12         266..1267     	 +	333	15834626	TC0001	TC0001	H	delta-aminolevulinic acid dehydratase	
2	 40.77        1300..2697     	 -	465	15834627	TC0002	TC0002	C	NADH:ubiquinone oxidoreductase, alpha subunit, putative	
3	 37.96 -1     2719..3150     	 -	143	15834628	TC0003	TC0003	-	conserved hypothetical protein	
4	 39.21        3266..5410     	 +	714	15834629	TC0004	TC0004	S	transcription elongation protein, GreA/GreB family	
5	 40.65        5599..6801     	 +	400	15834630	TC0005	TC0005	E	amino acid biosynthesis aminotransferase, class I	
6	 40.37        6749..7786     	 +	345	15834631	TC0006	TC0006	M	conserved hypothetical protein	
7	 37.81 -1     7797..10877    	 -	1026	15834632	TC0007	TC0007	L	exodeoxyribonuclease V, beta chain, putative	
8	 39.31       10885..13962    	 -	1025	15834633	TC0008	TC0008	L	exodeoxyribonuclease V, gamma subunit, putative	
9	 39.70       13912..15591    	 +	559	15834634	TC0009	TC0009	G	conserved hypothetical protein	
10	 40.47       15620..16432    	 -	270	15834635	TC0010	TC0010	-	conserved hypothetical protein	
11	 33.99 -2    17102..17404    	 -	100	15834636	TC0011	TC0011	-	hypothetical protein	
12	 39.80       17361..19958    	 +	865	15834637	TC0012	TC0012	L	DNA topoisomerase I	
13	 44.08 +1    19985..20989    	 -	334	15834638	TC0013	TC0013	R	NifR3/Smm1 family protein	
14	 38.05       20968..21264    	 -	98	15834639	TC0014	TC0014	S	conserved hypothetical protein	
15	 41.01       21367..22746    	 +	459	15834640	TC0015	TC0015	-	conserved hypothetical protein	
16	 43.70 +1    22747..23325    	 +	192	15834641	TC0016	TC0016	-	conserved hypothetical protein	
17	 40.78       23316..24590    	 +	424	15834642	TC0017	TC0017	S	conserved hypothetical protein	
18	 44.51 +1    24593..25129    	 +	178	15834643	TC0018	TC0018	H	5-formyltetrahydrofolate cyclo-ligase, putative	
19	 43.94 +1    25348..26412    	 +	354	15834644	TC0019	TC0019	L	recA protein	
20	 37.81 -1    26684..28513    	 +	609	15834645	TC0020	TC0020	-	conserved hypothetical protein	
21	 40.56       28506..29999    	 +	497	15834646	TC0021	TC0021	L	exodeoxyribonuclease V, alpha subunit, putative	
22	 43.33 +1    30065..30244    	 +	59	15834647	TC0022	TC0022	-	conserved hypothetical protein	
23	 40.14       30323..31042    	 -	239	15834648	TC0023	TC0023	R	ABC transporter, ATP-binding protein	
24	 39.67       31049..31537    	 -	162	15834649	TC0024	TC0024	-	conserved hypothetical protein	
25	 41.11       31534..32343    	 -	269	15834650	TC0025	TC0025	M	2-dehydro-3-deoxyphosphooctonate aldolase	
26	 46.60 +2    32584..32907    	 +	107	15834651	TC0026	TC0026	-	hypothetical protein	
27	 47.57 +2    32801..33088    	 +	95	15834652	TC0027	TC0027	-	conserved hypothetical protein	
28	 39.31       33098..33415    	 +	105	15834653	TC0028	TC0028	-	conserved hypothetical protein	
29	 43.16       33458..34495    	 +	345	15834654	TC0029	TC0029	J	ribosomal large subunit pseudouridine synthase D	
30	 41.77       34594..34830    	 +	78	15834655	TC0030	TC0030	R	conserved hypothetical protein	
31	 39.78       34919..36391    	 -	490	15834656	TC0031	TC0031	L	DNA gyrase, subunit A	
32	 38.78       36406..38223    	 -	605	15834657	TC0032	TC0032	L	DNA gyrase, subunit B	
33	 43.71 +1    38542..39543    	 +	333	15834658	TC0033	TC0033	H	glutamyl-tRNA reductase, putative	
34	 44.53 +1    40220..40621    	 +	133	15834659	TC0034	TC0034	-	conserved hypothetical protein	
35	 41.62       40625..43099    	 +	824	15834660	TC0035	TC0035	T	conserved hypothetical protein	
36	 37.65 -1    43144..43398    	 +	84	15834661	TC0036	TC0036	-	conserved hypothetical protein	
37	 39.76       43425..43673    	 +	82	15834662	TC0037	TC0037	-	conserved hypothetical protein	
38	 37.56 -1    43699..44148    	 +	149	15834663	TC0038	TC0038	R	conserved hypothetical protein	
39	 38.77       44161..44841    	 +	226	15834664	TC0039	TC0039	-	conserved hypothetical protein	
40	 44.92 +1    44843..46171    	 +	442	15834665	TC0040	TC0040	N	type III secretion cytoplasmic ATPase SctN	
41	 39.05       46194..46700    	 +	168	15834666	TC0041	TC0041	-	conserved hypothetical protein	
42	 39.55       46704..47555    	 +	283	15834667	TC0042	TC0042	-	conserved hypothetical protein	
43	 42.78       47565..48686    	 +	373	15834668	TC0043	TC0043	N	type III secretion translocase SctQ	
44	 40.95       48816..50285    	 +	489	15834669	TC0044	TC0044	T	serine/threonine-protein kinase	
45	 40.32       51020..53038    	 +	672	15834670	TC0045	TC0045	N	type III secretion protein SctC	
46	 40.06       53352..54422    	 -	356	15834671	TC0046	TC0046	-	conserved hypothetical protein	
47	 39.14       54412..54945    	 -	177	15834672	TC0047	TC0047	-	conserved hypothetical protein	
48	 40.19       55291..55830    	 -	179	15834673	TC0048	TC0048	J	ribosome recycling factor	
49	 44.31 +1    55827..56564    	 -	245	15834674	TC0049	TC0049	F	uridylate kinase	
50	 41.81       56580..57428    	 -	282	15834675	TC0050	TC0050	J	translation elongation factor Ts	
51	 37.83 -1    57425..58270    	 -	281	15834676	TC0051	TC0051	J	ribosomal protein S2	
52	 43.90 +1    58653..59816    	 -	387	15834677	TC0052	TC0052	-	major outer membrane protein, porin	
53	 28.83 -2    60279..60389    	 +	36	15834678	TC0053	TC0053	-	hypothetical protein	
54	 41.10       60401..63643    	 +	1080	15834679	TC0054	TC0054	M	penicillin-binding protein, putative	
55	 39.38       63705..64712    	 +	335	15834680	TC0055	TC0055	R	type III secretion chaperone, putative	
56	 40.01       65061..66512    	 +	483	15834681	TC0056	TC0056	R	conserved hypothetical protein	
57	 42.19       66515..67282    	 +	255	15834682	TC0057	TC0057	R	ABC transporter, ATP-binding protein	
58	 41.54       67286..68467    	 +	393	15834683	TC0058	TC0058	R	conserved hypothetical protein	
59	 42.64       68470..69672    	 +	400	15834684	TC0059	TC0059	E	aminotransferase, class V	
60	 41.04       69809..70651    	 +	280	15834685	TC0060	TC0060	K	chromosome partioning protein, ParB family	
61	 42.50       70641..71513    	 -	290	15834686	TC0061	TC0061	E	peptide ABC transporter, ATP-binding protein	
62	 40.79       71506..72471    	 -	321	15834687	TC0062	TC0062	E	peptide ABC transporter, ATP-binding protein	
63	 39.85       72634..73308    	 +	224	15834688	TC0063	TC0063	P	conserved hypothetical protein	
64	 43.64 +1    73311..74591    	 +	426	15834689	TC0064	TC0064	P	phosphate permease family protein	
65	 44.55 +1    74721..75932    	 +	403	15834690	TC0065	TC0065	G	phosphoglycerate kinase	
66	 43.28 +1    76176..77180    	 +	334	15834691	TC0066	TC0066	-	hypothetical protein	
67	 43.38 +1    77193..78386    	 +	397	15834692	TC0067	TC0067	-	conserved hypothetical protein	
68	 40.29       78466..79644    	 +	392	15834693	TC0068	TC0068	-	conserved hypothetical protein	
69	 42.34       79650..80282    	 -	210	15834694	TC0069	TC0069	L	endonuclease III	
70	 41.87       80287..81621    	 -	444	15834695	TC0070	TC0070	R	thiophene and furan oxidation protein ThdF	
71	 33.33 -2    81723..81842    	 -	39	15834696	TC0071	TC0071	-	hypothetical protein	
72	 41.06       81897..82802    	 +	301	15834697	TC0072	TC0072	I	phosphatidylserine decarboxylase proenzyme	
73	 42.91       82867..84192    	 +	441	15834698	TC0073	TC0073	R	conserved hypothetical protein	
74	 42.59       84449..87355    	 +	968	15834699	TC0074	TC0074	N	preprotein translocase SecA subunit	
75	 39.70       87441..87974    	 -	177	15834700	TC0075	TC0075	-	conserved hypothetical protein	
76	 39.99       88050..89522    	 -	490	15834701	TC0076	TC0076	R	GTP-binding protein, Era/ThdF family	
77	 42.82       89637..90869    	 -	410	15834702	TC0077	TC0077	J	poly(A) polymerase family protein	
78	 41.51       90884..92143    	 -	419	15834703	TC0078	TC0078	O	ATP-dependent Clp protease, ATP-binding regulatory subunit ClpX	
79	 44.61 +1    92153..92764    	 -	203	15834704	TC0079	TC0079	N	ATP-dependent Clp protease, proteolytic subunit	
80	 39.55       92932..94233    	 -	433	15834705	TC0080	TC0080	O	trigger factor	
81	 39.79       94564..98109    	 +	1181	15834706	TC0081	TC0081	K	helicase, Snf2 family	
82	 43.60 +1    98114..99214    	 +	366	15834707	TC0082	TC0082	D	cell shape-determining protein MreB	
83	 45.11 +1    99211..101010   	 +	599	15834708	TC0083	TC0083	C	phosphoenolpyruvate carboxykinase	
84	 39.00      101121..103430   	 +	769	15834709	TC0084	TC0084	-	conserved hypothetical protein	
85	 40.24      103459..104631   	 +	390	15834710	TC0085	TC0085	-	conserved hypothetical protein	
86	 43.21 +1   104689..105711   	 -	340	15834711	TC0086	TC0086	-	major outer membrane protein, putative	
87	 43.38 +1   105847..106851   	 -	334	15834712	TC0087	TC0087	C	glycerol-3-phosphate dehydrogenase, NAD-dependent	
88	 41.74      106848..108215   	 -	455	15834713	TC0088	TC0088	-	UDP-N-acetylglucosamine pyrophosphorylase, putative	
89	 33.61 -2   108232..108594   	 -	120	15834714	TC0089	TC0089	-	conserved hypothetical protein	
90	 43.14      108587..109891   	 -	434	15834715	TC0090	TC0090	N	virulence ATPase, putative	
91	 40.00      109951..110475   	 -	174	15834716	TC0091	TC0091	-	conserved hypothetical protein	
92	 41.34      110480..111478   	 -	332	15834717	TC0092	TC0092	N	conserved hypothetical protein	
93	 41.89      111746..112528   	 -	260	15834718	TC0093	TC0093	C	NifU-related protein	
94	 43.90 +1   112525..113679   	 -	384	15834719	TC0094	TC0094	E	nifS protein, putative	
95	 39.35      113634..114314   	 -	226	15834720	TC0095	TC0095	G	phosphoglycerate mutase	
96	 42.84      114604..115329   	 +	241	15834721	TC0096	TC0096	J	ribosomal large subunit pseudouridine synthase B	
97	 38.48      115433..115957   	 +	174	15834722	TC0097	TC0097	-	conserved hypothetical protein	
98	 40.72      115972..116526   	 +	184	15834723	TC0098	TC0098	H	BirA-related protein	
99	 41.75      116534..117673   	 -	379	15834724	TC0099	TC0099	D	cell shape-determining protein MrdB, putative	
100	 43.33 +1   117718..119697   	 -	659	15834725	TC0100	TC0100	P	cation-transporting ATPase, E1-E2 family	

 
 40.59 MEAN 
 
 2.58  STD DEV 






Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.