IslandPath Analysis: Chlamydophila caviae GPIC



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No tRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.42   STD DEV: 2.69
Chlamydophila caviae GPIC, complete genome - 0..1173390
998 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 38.15          57..1052     	 +	331	29839770	hemB	CCA00001	-	delta-aminolevulinic acid dehydratase	
2	 38.71        1068..2480     	 -	470	29839771	nqrA	CCA00002	-	NADH:ubiquinone oxidoreductase, subunit A	
3	 32.18 -2     2502..2936     	 -	144	29839772	-	CCA00003	-	conserved hypothetical protein	
4	 36.54 -1     3048..5201     	 +	717	29839773	greA	CCA00004	-	transcription elongation factor GreA	
5	 38.79        5353..6543     	 +	396	29839774	-	CCA00005	-	amino acid biosynthesis aminotransferase, class I	
6	 38.71        6839..7861     	 +	340	29839775	-	CCA00006	-	conserved hypothetical protein	
7	 36.55 -1     7821..10958    	 -	1045	29839776	recB	CCA00007	-	exodeoxyribonuclease V, beta subunit	
8	 36.89       10945..14010    	 -	1021	29839777	recC	CCA00008	-	exodeoxyribonuclease V, gamma subunit	
9	 39.11       14009..15721    	 +	570	29839778	-	CCA00009	-	efflux protein, putative	
10	 39.96       15743..16738    	 -	331	29839779	-	CCA00010	-	rhodanese-like domain protein	
11	 40.79       16965..17594    	 +	209	29839780	rpsD	CCA00011	-	ribosomal protein S4	
12	 40.92       17659..18528    	 -	289	29839781	nfo	CCA00012	-	endonuclease IV	
13	 41.06       18594..20237    	 +	547	29839782	-	CCA00013	-	conserved hypothetical protein	
14	 39.72       20346..21614    	 +	422	29839783	-	CCA00014	-	conserved hypothetical protein	
15	 43.90 +1    21725..23635    	 +	636	29839784	-	CCA00015	-	conserved hypothetical protein	
16	 38.04       23820..26432    	 -	870	29839785	-	CCA00016	-	conserved hypothetical protein	
17	 37.35       26634..29150    	 +	838	29839786	-	CCA00017	-	conserved hypothetical protein	
18	 38.10       29189..29419    	 +	76	29839787	-	CCA00018	-	conserved hypothetical protein	
19	 38.04       29416..30138    	 -	240	29839788	-	CCA00019	-	ABC transporter, ATP-binding protein	
20	 38.89       30144..30629    	 -	161	29839789	-	CCA00020	-	conserved hypothetical protein	
21	 41.73       30626..31435    	 -	269	29839790	kdsA	CCA00021	-	2-dehydro-3-deoxyphosphooctonate aldolase	
22	 40.51       31875..32111    	 -	78	29839791	-	CCA00022	-	KH domain protein	
23	 39.16       33445..33753    	 -	102	29839792	-	CCA00024	-	conserved hypothetical protein	
24	 36.73       33755..34048    	 -	97	29839793	-	CCA00025	-	conserved hypothetical protein	
25	 38.54       34161..35600    	 -	479	29839794	-	CCA00026	-	topoisomerase, subunit A, putative	
26	 36.04 -1    35604..37412    	 -	602	29839795	-	CCA00027	-	topoisomerase, subunit B, putative	
27	 37.86       37967..38983    	 +	338	29839796	-	CCA00028	-	oxidoreductase	
28	 38.02       39330..39734    	 +	134	29839797	-	CCA00029	-	conserved hypothetical protein	
29	 39.71       39754..42231    	 +	825	29839798	-	CCA00030	-	FHA domain protein	
30	 37.70       42278..42529    	 +	83	29839799	-	CCA00031	-	conserved hypothetical protein	
31	 38.70       42553..42813    	 +	86	29839800	-	CCA00032	-	conserved hypothetical protein	
32	 36.67 -1    42832..43281    	 +	149	29839801	-	CCA00033	-	conserved hypothetical protein	
33	 38.57       43325..43993    	 +	222	29839802	-	CCA00034	-	conserved hypothetical protein	
34	 44.17 +1    43995..45323    	 +	442	29839803	sctN	CCA00035	-	type III secretion cytoplasmic ATPase SctN	
35	 38.54       45344..45862    	 +	172	29839804	-	CCA00036	-	conserved hypothetical protein	
36	 38.16       45853..46701    	 +	282	29839805	-	CCA00037	-	conserved hypothetical protein	
37	 40.23       46714..47829    	 +	371	29839806	sctQ	CCA00038	-	type III secretion translocase SctQ	
38	 38.45       47847..49352    	 +	501	29839807	pkn5	CCA00039	-	serine/threonine-protein kinase	
39	 39.93       49349..52078    	 +	909	29839808	sctC	CCA00040	-	type III secretion protein SctC	
40	 39.09       52707..53783    	 -	358	29839809	-	CCA00041	-	arginine kinase-related protein	
41	 40.66       53767..54285    	 -	172	29839810	-	CCA00042	-	conserved hypothetical protein	
42	 37.75       54691..55233    	 -	180	29839811	frr	CCA00043	-	ribosome recycling factor	
43	 39.00       55235..55957    	 -	240	29839812	pyrH	CCA00044	-	uridylate kinase	
44	 39.22       55973..56821    	 -	282	29839813	tsf	CCA00045	-	translation elongation factor Ts	
45	 38.51       56821..57651    	 -	276	29839814	rpsB	CCA00046	-	ribosomal protein S2	
46	 42.99 +1    58028..59197    	 -	389	29839815	ompA	CCA00047	-	major outer membrane protein, porin	
47	 40.29       59801..63076    	 +	1091	29839816	pbp2	CCA00048	-	PBP2-transglycolase/transpeptidase	
48	 40.67       63144..64151    	 +	335	29839817	-	CCA00049	-	type III secretion chaperone, putative	
49	 40.55       64506..65960    	 +	484	29839818	-	CCA00050	-	conserved hypothetical protein	
50	 38.93       65964..66731    	 +	255	29839819	-	CCA00051	-	ABC transporter, ATP-binding protein	
51	 40.00       66733..68007    	 +	424	29839820	-	CCA00052	-	conserved hypothetical protein	
52	 40.95       67997..69217    	 +	406	29839821	b1680	CCA00053	-	aminotransferase, class V	
53	 37.95       69220..69999    	 -	259	29839822	-	CCA00054	-	conserved hypothetical protein	
54	 39.30       70193..70846    	 -	217	29839823	-	CCA00055	-	conserved hypothetical protein	
55	 41.01       71087..71920    	 +	277	29839824	parB	CCA00056	-	chromosome partioning protein, ParB family	
56	 37.98       71959..72927    	 -	322	29839825	dppF	CCA00057	-	peptide ABC transporter, ATP-binding protein	
57	 41.95       72920..73882    	 -	320	29839826	-	CCA00058	-	peptide ABC transporter, ATP-binding protein	
58	 39.41       73936..74610    	 +	224	29839827	-	CCA00059	-	conserved hypothetical protein	
59	 42.70 +1    74617..75897    	 +	426	29839828	-	CCA00060	-	phosphate permease family protein	
60	 44.80 +1    75935..77146    	 +	403	29839829	pgk	CCA00061	-	phosphoglycerate kinase	
61	 43.46 +1    77599..78990    	 +	463	29839830	-	CCA00062	-	conserved hypothetical protein	
62	 43.35 +1    79009..80226    	 +	405	29839831	-	CCA00063	-	conserved hypothetical protein	
63	 38.96       80322..81476    	 +	384	29839832	-	CCA00064	-	conserved hypothetical protein	
64	 40.68       81600..82715    	 +	371	29839833	-	CCA00065	-	Nol1/Nop2/Sun family protein	
65	 36.67 -1    82721..83110    	 -	129	29839834	-	CCA00066	-	conserved hypothetical protein	
66	 42.32 +1    83161..84462    	 -	433	29839835	-	CCA00067	-	D-alanyl-D-alanine carboxypeptidase	
67	 40.19       84573..84995    	 +	140	29839836	-	CCA00068	-	conserved hypothetical protein	
68	 38.13       84982..85440    	 -	152	29839837	-	CCA00069	-	rsbW protein, putative	
69	 40.00       85409..86008    	 -	199	29839838	-	CCA00070	-	conserved hypothetical protein	
70	 36.05 -1    86025..86981    	 -	318	29839839	-	CCA00071	-	TPR domain protein	
71	 39.77       87134..88018    	 +	294	29839840	-	CCA00072	-	conserved hypothetical protein	
72	 38.99       88015..91743    	 -	1242	29839841	dnaE	CCA00073	-	DNA polymerase III, alpha subunit	
73	 40.28       91769..93136    	 -	455	29839842	uhpC	CCA00074	-	sugar phosphate sensor protein UhpC	
74	 38.81       93368..93586    	 +	72	29839843	-	CCA00075	-	hypothetical protein	
75	 40.06       93655..94947    	 +	430	29839844	hisS	CCA00076	-	histidyl-tRNA synthetase	
76	 38.75       94922..96676    	 +	584	29839845	aspS	CCA00077	-	aspartyl-tRNA synthetase	
77	 39.32       96752..97519    	 +	255	29839846	mip	CCA00078	-	peptidyl-prolyl cis-trans isomerase Mip	
78	 38.85       97516..97986    	 +	156	29839847	-	CCA00079	-	RNA methyltransferase, TrmH family	
79	 40.13       97983..98291    	 -	102	29839848	trx	CCA00080	-	thioredoxin	
80	 29.29 -2    98417..98515    	 +	32	29839849	-	CCA00081	-	hypothetical protein	
81	 28.85 -2    98701..98856    	 +	51	29839850	-	CCA00082	-	hypothetical protein	
82	 37.80       99311..100027   	 +	238	29839851	-	CCA00083	-	conserved hypothetical protein	
83	 40.91      100006..100467   	 +	153	29839852	-	CCA00084	-	conserved hypothetical protein TIGR00150	
84	 37.33      100477..101226   	 +	249	29839853	dnaQ-1	CCA00085	-	DNA polymerase III, epsilon chain	
85	 38.85      101387..101857   	 +	156	29839854	-	CCA00086	-	cytosolic acyl-CoA thioester hydrolase family protein	
86	 39.67      101865..103490   	 +	541	29839855	-	CCA00087	-	hydrolase, carbon-nitrogen family	
87	 42.54 +1   103505..104362   	 +	285	29839856	lpxC	CCA00088	-	UDP-3-0-acyl N-acetylglucosamine deacetylase	
88	 39.35      104377..104841   	 +	154	29839857	fabZ	CCA00089	-	(3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase	
89	 41.55      104851..105690   	 +	279	29839858	lpxA	CCA00090	-	acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine o-acyltransferase	
90	 42.34 +1   105677..106642   	 +	321	29839859	fmt	CCA00091	-	methionyl-tRNA formyltransferase	
91	 42.97 +1   106758..107732   	 +	324	29839860	-	CCA00092	-	conserved hypothetical protein	
92	 40.84      108028..108693   	 +	221	29839861	rplC	CCA00093	-	ribosomal protein L3	
93	 40.74      108710..109384   	 +	224	29839862	rplD	CCA00094	-	ribosomal protein L4	
94	 38.39      109401..109736   	 +	111	29839863	rplW	CCA00095	-	ribosomal protein L23	
95	 42.57 +1   109758..110612   	 +	284	29839864	rplB	CCA00096	-	ribosomal protein L2	
96	 37.45      110618..110884   	 +	88	29839865	rpsS	CCA00097	-	ribosomal protein S19	
97	 44.94 +2   110903..111238   	 +	111	29839866	rplV	CCA00098	-	ribosomal protein L22	
98	 42.41 +1   111247..111918   	 +	223	29839867	rpsC	CCA00099	-	ribosomal protein S3	
99	 42.93 +1   111945..112361   	 +	138	29839868	rplP	CCA00100	-	ribosomal protein L16	
100	 37.90      112367..112585   	 +	72	29839869	rpmC	CCA00101	-	ribosomal protein L29	

 
 39.42 MEAN 
 
 2.69  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.