IslandPathversion 1.0

IslandPath Analysis: Caulobacter crescentus



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.28 STD DEV: 3.33
Caulobacter crescentus, complete genome - 0..4016947
3737 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 65.30         160..1107     	 +	315	16124257	-	CC0001	S	conserved hypothetical protein	
2	 66.17        1104..1703     	 +	199	16124258	-	CC0002	D	Maf/YceF/YhdE family protein	
3	 68.65        1700..2557     	 +	285	16124259	-	CC0003	E	shikimate 5-dehydrogenase	
4	 66.97        2490..3158     	 +	222	16124260	-	CC0004	H	kinase, putative	
5	 64.15        3190..3903     	 +	237	16124261	-	CC0005	L	DNA polymerase III, epsilon subunit	
6	 67.43        4022..4810     	 +	262	16124262	-	CC0006	I	enoyl-CoA hydratase/isomerase family protein	
7	 65.58        4960..5235     	 +	91	16124263	-	CC0007	J	ribosomal protein S20	
8	 67.35        5636..7108     	 +	490	16124264	-	CC0008	L	chromosomal replication initiator protein DnaA	
9	 67.72        7170..7832     	 -	220	16124265	-	CC0009	L	DNA alkylation damage repair protein AlkB	
10	 64.77        8165..10060    	 +	631	16124266	-	CC0010	O	dnaK protein	
11	 68.05       10223..11380    	 +	385	16124267	-	CC0011	O	dnaJ protein	
12	 70.76 +1    11467..14178    	 +	903	16124268	-	CC0012	L	DNA mismatch repair protein MutS	
13	 67.62       14199..17021    	 +	940	16124269	-	CC0013	O	[protein-pII] uridylyltransferase	
14	 66.84       17018..17578    	 -	186	16124270	-	CC0014	H	molybdenum cofactor biosynthesis protein C	
15	 65.40       17491..18042    	 -	183	16124271	-	CC0015	H	molybdenum cofactor biosynthesis protein B	
16	 68.21       18043..18495    	 -	150	16124272	-	CC0016	H	molybdopterin converting factor, subunit 2	
17	 71.25 +1    18492..18731    	 -	79	16124273	-	CC0017	H	molybdopterin converting factor, subunit 1	
18	 67.33       18735..19784    	 -	349	16124274	-	CC0018	H	molybdenum cofactor biosynthesis protein A	
19	 69.83       19815..20447    	 +	210	16124275	-	CC0019	R	conserved hypothetical protein	
20	 65.78       20444..20668    	 -	74	16124276	-	CC0020	-	hypothetical protein	
21	 67.08       20840..23032    	 -	730	16124277	-	CC0021	C	isoquinoline 1-oxidoreductase, beta subunit	
22	 67.81       23029..23553    	 -	174	16124278	-	CC0022	C	isoquinoline 1-oxidoreductase, alpha subunit	
23	 66.18       23550..24170    	 -	206	16124279	-	CC0023	-	hypothetical protein	
24	 73.14 +1    24133..24981    	 +	282	16124280	-	CC0024	H	siroheme synthase-related protein	
25	 65.70       24991..26643    	 -	550	16124281	-	CC0025	G	major facilitator family transporter	
26	 68.18       26701..29403    	 -	900	16124282	-	CC0026	T	sensory box histidine kinase/response regulator	
27	 65.80       29502..30191    	 -	229	16124283	-	CC0027	S	conserved hypothetical protein	
28	 66.12       30337..32892    	 -	851	16124284	-	CC0028	P	TonB-dependent receptor	
29	 68.40       32914..33546    	 +	210	16124285	-	CC0029	E	efflux protein, LysE family	
30	 68.84       33595..34329    	 +	244	16124286	-	CC0030	J	ribonuclease T2 family protein	
31	 63.57 -1    34312..34698    	 -	128	16124287	-	CC0031	R	vapC protein	
32	 62.50 -1    34699..34938    	 -	79	16124288	-	CC0032	-	vapB family protein	
33	 58.45 -2    35047..35667    	 -	206	16124289	-	CC0033	-	hypothetical protein	
34	 64.75       35824..37962    	 -	712	16124290	-	CC0034	J	polyribonucleotide nucleotidyltransferase	
35	 62.22 -1    38211..38480    	 -	89	16124291	-	CC0035	J	ribosomal protein S15	
36	 67.20       38495..39427    	 -	310	16124292	-	CC0036	J	tRNA pseudouridine synthase B	
37	 65.11       39430..39879    	 -	149	16124293	-	CC0037	J	ribosome-binding factor A	
38	 67.93       39980..40768    	 -	262	16124294	-	CC0038	Q	dienelactone hydrolase family protein	
39	 68.92       40828..41403    	 -	191	16124295	-	CC0039	-	hypothetical protein	
40	 71.87 +1    41403..41921    	 -	172	16124296	-	CC0040	-	hypothetical protein	
41	 60.53 -2    41960..42529    	 -	189	16124297	-	CC0041	-	hypothetical protein	
42	 70.04       42585..45698    	 -	1037	16124298	-	CC0042	J	translation initiation factor IF-2	
43	 68.05       45893..46543    	 -	216	16124299	-	CC0043	K	hypothetical protein	
44	 65.51       46622..48268    	 -	548	16124300	-	CC0044	K	N utilization substance protein A	
45	 66.05       48271..48753    	 -	160	16124301	-	CC0045	S	conserved hypothetical protein	
46	 64.52       48753..48845    	 -	30	16124302	-	CC0046	-	hypothetical protein	
47	 63.48 -1    49104..49637    	 +	177	16124303	-	CC0047	C	inorganic pyrophosphatase	
48	 64.72       49653..50114    	 +	153	16124304	-	CC0048	-	hypothetical protein	
49	 67.28       50131..50946    	 -	271	16124305	-	CC0049	R	conserved hypothetical protein	
50	 66.34       50901..52124    	 -	407	16124306	-	CC0050	H	S-adenosylmethionine synthetase	
51	 63.17 -1    52244..52672    	 -	142	16124307	-	CC0051	K	transcriptional regulator, Cro/CI family	
52	 67.04       52706..54298    	 -	530	16124308	-	CC0052	M	apolipoprotein N-acyltransferase	
53	 69.69       54295..55221    	 -	308	16124309	-	CC0053	N	CBS domain protein	
54	 64.35       55230..55703    	 -	157	16124310	-	CC0054	R	conserved hypothetical protein	
55	 69.37       55723..56646    	 -	307	16124311	-	CC0055	T	phosphate starvation-inducible protein PhoH, putative	
56	 63.24 -1    58201..58608    	 -	135	16124312	-	CC0057	P	ferric uptake regulation protein	
57	 68.87       58654..59106    	 -	150	16124313	-	CC0058	R	ribosomal-protein-alanine acetyltransferase, putative	
58	 72.01 +1    59115..59750    	 -	211	16124314	-	CC0059	O	glycoprotease family protein	
59	 69.35       59754..60386    	 -	210	16124315	-	CC0060	-	hypothetical protein	
60	 64.46       60534..61121    	 -	195	16124316	-	CC0061	C	nitroreductase family protein	
61	 64.00       61191..61865    	 -	224	16124317	-	CC0062	O	NifU-like domain protein	
62	 63.83 -1    61849..63153    	 +	434	16124318	-	CC0063	Q	cytochrome P450 family protein	
63	 67.83       63327..64361    	 -	344	16124319	-	CC0064	J	tryptophanyl-tRNA synthetase	
64	 70.05       64529..66181    	 -	550	16124320	-	CC0065	R	MviN family protein	
65	 69.06       66331..68127    	 -	598	16124321	-	CC0066	N	methyl-accepting chemotaxis protein McpQ	
66	 65.49       68289..69050    	 -	253	16124322	-	CC0067	Q	conserved hypothetical protein	
67	 72.90 +1    69120..69488    	 -	122	16124323	-	CC0068	P	ferredoxin, Rieske 2Fe-2S family	
68	 69.15       69493..69774    	 -	93	16124324	-	CC0069	S	conserved hypothetical protein	
69	 74.00 +2    69794..70789    	 -	331	16124325	-	CC0070	C	glycerol-3-phosphate dehydrogenase (NAD+)	
70	 71.92 +1    70801..71904    	 -	367	16124326	-	CC0071	O	peptidase M22 family protein	
71	 72.14 +1    71977..72945    	 +	322	16124327	-	CC0072	H	porphobilinogen deaminase	
72	 71.71 +1    72929..73681    	 -	250	16124328	-	CC0073	-	hypothetical protein	
73	 74.43 +2    73662..74576    	 +	304	16124329	-	CC0074	-	hypothetical protein	
74	 73.18 +1    74573..76108    	 +	511	16124330	-	CC0075	S	hypothetical protein	
75	 66.90       76477..78606    	 -	709	16124331	-	CC0076	I	fatty oxidation complex, alpha subunit	
76	 68.33       78703..79908    	 -	401	16124332	-	CC0077	I	fatty oxidation complex, beta subunit, putative	
77	 69.53       79975..80358    	 -	127	16124333	-	CC0078	-	hypothetical protein	
78	 63.18 -1    80355..81530    	 -	391	16124334	-	CC0079	I	acyl-CoA dehydrogenase, long-chain specific	
79	 66.00       81533..83326    	 -	597	16124335	-	CC0080	I	acyl-CoA dehydrogenase family protein	
80	 67.71       83414..83893    	 -	159	16124336	-	CC0081	K	transcriptional regulator, putative	
81	 72.12 +1    84087..84728    	 +	213	16124337	-	CC0082	K	hypothetical protein	
82	 68.10       84763..84972    	 -	69	16124338	-	CC0083	-	hypothetical protein	
83	 66.31       85222..86880    	 -	552	16124339	-	CC0084	J	lysyl-tRNA synthetase	
84	 70.27       87043..88680    	 -	545	16124340	-	CC0085	G	phosphoglucomutase	
85	 68.81       89053..90642    	 +	529	16124341	-	CC0086	F	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	
86	 69.43       90655..91413    	 +	252	16124342	-	CC0087	-	hypothetical protein	
87	 66.07       91467..96290    	 -	1607	16124343	-	CC0088	E	conserved hypothetical protein	
88	 62.85 -1    96628..97650    	 -	340	16124344	-	CC0089	R	conserved hypothetical protein	
89	 66.92       97835..99385    	 +	516	16124345	-	CC0090	R	conserved hypothetical protein	
90	 67.41       99466..101895   	 -	809	16124346	-	CC0091	T	sensory box/GGDEF family protein	
91	 67.38      101960..102943   	 -	327	16124347	-	CC0092	M	UDP-glucose 4-epimerase	
92	 68.46      103149..104042   	 -	297	16124348	-	CC0093	G	integral membrane protein	
93	 69.36      104039..104929   	 -	296	16124349	-	CC0094	Q	2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase	
94	 68.14      105310..106260   	 -	316	16124350	-	CC0095	M	WecB/TagA/CpsF family protein	
95	 69.47      106334..107332   	 -	332	16124351	-	CC0096	C	alcohol dehydrogenase, zinc-containing	
96	 73.49 +1   107402..108280   	 +	292	16124352	-	CC0097	E	asparaginase family protein	
97	 69.28      108334..108792   	 +	152	16124353	-	CC0098	-	hypothetical protein	
98	 69.87      108931..109242   	 +	103	16124354	-	CC0099	-	hypothetical protein	
99	 73.83 +1   109239..110969   	 -	576	16124355	-	CC0100	-	hypothetical protein	
100	 69.16      110979..111659   	 -	226	16124356	-	CC0101	G	ribulose-phosphate 3-epimerase	

 
 67.28 MEAN 
 
 3.33  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.