IslandPath Analysis: Buchnera aphidicola str Sg (Schizaphis graminum)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.26   STD DEV: 3.96
Buchnera aphidicola str. Sg (Schizaphis graminum) complete genome - 0..641454
545 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 29.01           1..1896     	 +	631	21622893	gidA	BUsg001	-	glucose inhibited division protein A	
2	 26.37        2026..2844     	 +	272	21622894	atpB	BUsg002	-	ATP synthase A chain	
3	 33.75 +1     2887..3126     	 +	79	21622895	atpE	BUsg003	-	ATP synthase C chain	
4	 22.36        3237..3728     	 +	163	21622896	atpF	BUsg004	-	ATP synthase B chain	
5	 22.47        3740..4273     	 +	177	21622897	atpH	BUsg005	-	ATP synthase delta chain	
6	 30.66 +1     4287..5819     	 +	510	21622898	atpA	BUsg006	-	ATP synthase alpha chain	
7	 25.91        5886..6761     	 +	291	21622899	atpG	BUsg007	-	ATP synthase gamma chain	
8	 33.12 +1     6783..8183     	 +	466	21622900	atpD	BUsg008	-	ATP synthase beta chain	
9	 29.50        8205..8621     	 +	138	21622901	atpC	BUsg009	-	ATP synthase epsilon chain	
10	 26.16        8726..11137    	 -	803	21622902	gyrB	BUsg010	-	DNA gyrase subunit B	
11	 21.62 -1    11292..12392    	 -	366	21622904	dnaN	BUsg011	-	DNA polymerase III beta chain	
12	 30.26 +1    12397..13761    	 -	454	21622905	dnaA	BUsg012	-	chromosomal replication initiator protein	
13	 34.72 +2    14180..14323    	 +	47	21622906	rpmH	BUsg013	-	50S ribosomal protein L34	
14	 22.32       14337..14681    	 +	114	21622907	rnpA	BUsg014	-	ribonuclease P protein component	
15	 25.19       14660..14917    	 +	85	21622908	yidD	BUsg015	-	hypothetical protein	
16	 26.21       14917..16530    	 +	537	21622909	yidC	BUsg016	-	inner membrane protein	
17	 26.84       16573..17943    	 +	456	21622910	thdF	BUsg017	-	thiophene and furan oxidation protein	
18	 34.36 +2    18275..18565    	 +	96	21622911	mopB	BUsg018	-	10 kd chaperonin (GroES)	
19	 35.94 +2    18623..20269    	 +	548	21622912	mopA	BUsg019	-	60 kd chaperonin (protein cpn60)	
20	 23.77       20390..21403    	 -	337	21622913	yjeK	BUsg020	-	hypothetical 38.7 kD protein in mopA-efp	
21	 25.71       21429..21992    	 +	187	21622914	efp	BUsg021	-	elongation factor P	
22	 29.69       22015..22755    	 -	246	21622915	dnaC	BUsg022	-	DNA replication protein DnaC	
23	 24.95       22755..23255    	 -	166	21622916	dnaT	BUsg023	-	primosomal protein I	
24	 25.00       24003..25058    	 +	351	21622918	ftsY	BUsg025	-	cell division protein FtsY	
25	 29.60       25214..26071    	 +	285	21622919	rpoH	BUsg026	-	RNA polymerase sigma-32 factor	
26	 27.37       26225..28051    	 -	608	21622920	glmS	BUsg027	-	glucosamine--fructose-6-phosphate aminotransferase	
27	 25.69       28115..29500    	 -	461	21622921	glmU	BUsg028	-	UDP-N-acetylglucosamine pyrophosphorylase	
28	 24.97       29642..30466    	 +	274	21622922	yigL	BUsg029	-	hypothetical 29.8 kD protein in pldB-metR	
29	 27.58       30453..31391    	 -	312	21622923	metR	BUsg030	-	transcriptional activator protein MetR	
30	 28.54       31532..33805    	 +	757	21622924	metE	BUsg031	-	5-methyltetrahydropteroyltriglutamate--homocystein	
31	 26.69       33999..35579    	 -	526	21622926	purH	BUsg032	-	bifunctional purine biosynthesis protein	
32	 26.37       35721..35993    	 -	90	21622927	hupA	BUsg033	-	DNA-binding protein hu-alpha	
33	 32.37 +1    36463..40704    	 -	1413	21622928	rpoC	BUsg034	-	DNA-directed RNA polymerase beta' chain	
34	 31.15 +1    40773..44801    	 -	1342	21622929	rpoB	BUsg035	-	DNA-directed RNA polymerase beta chain	
35	 30.89 +1    45007..45375    	 -	122	21622931	rplL	BUsg036	-	50S ribosomal protein L7/l12	
36	 26.91       45446..45943    	 -	165	21622932	rplJ	BUsg037	-	50S ribosomal protein L10	
37	 28.88       46191..46886    	 -	231	21622933	rplA	BUsg038	-	50S ribosomal protein L1	
38	 30.54 +1    46888..47316    	 -	142	21622934	rplK	BUsg039	-	50S ribosomal protein L11	
39	 30.95 +1    47344..47889    	 -	181	21622935	nusG	BUsg040	-	transcription antitermination protein NusG	
40	 23.18       47894..48277    	 -	127	21622936	secE	BUsg041	-	preprotein translocase SecE subunit	
41	 22.51       49078..50112    	 -	344	21622937	murB	BUsg042	-	UDP-N-acetylenolpyruvoylglucosamine reductase	
42	 24.69       50249..51127    	 +	292	21622938	metF	BUsg043	-	5,10-methylenetetrahydrofolate reductase	
43	 26.18       51160..52305    	 -	381	21622939	argE	BUsg044	-	acetylornithine deacetylase	
44	 27.06       52469..53473    	 +	334	21622940	argC	BUsg045	-	N-acetyl-gamma-glutamyl-phosphate reductase	
45	 30.76 +1    53489..54265    	 +	258	21622941	argB	BUsg046	-	acetylglutamate kinase	
46	 32.17 +1    54294..55499    	 +	401	21622942	argG	BUsg047	-	argininosuccinate synthase	
47	 29.13       55540..56919    	 +	459	21622943	argH	BUsg048	-	argininosuccinate lyase	
48	 18.69 -1    57050..57493    	 +	147	21622945	yibN	BUsg049	-	hypothetical 15.6 kD protein in secB-tdh	
49	 22.58       57569..58033    	 +	154	21622946	secB	BUsg050	-	protein-export protein SecB	
50	 26.59       58094..58879    	 +	261	21622947	cysE	BUsg051	-	serine acetyltransferase	
51	 31.28 +1    59048..60901    	 -	617	21622948	rpoD	BUsg052	-	RNA polymerase sigma factor RpoD	
52	 23.56       61015..62754    	 -	579	21622949	dnaG	BUsg053	-	DNA primase	
53	 35.19 +2    62833..63048    	 -	71	21622950	rpsU	BUsg054	-	30S ribosomal protein S21	
54	 29.09       63281..64294    	 +	337	21622951	gcp	BUsg055	-	probable O-sialoglycoprotein endopeptidase	
55	 32.24 +1    64337..64978    	 -	213	21622952	ribB	BUsg056	-	3,4-dihydroxy-2-butanone 4-phosphate synthase	
56	 26.56       65253..66197    	 -	314	21622953	rfaE	BUsg057	-	ADP-heptose synthas	
57	 24.86       66445..67683    	 +	412	21622954	cca	BUsg058	-	tRNA nucleotidyltransferase	
58	 22.64       67690..68484    	 -	264	21622955	bacA	BUsg059	-	bacitracin resistance protein	
59	 25.20       68547..69050    	 -	167	21622956	crr	BUsg060	-	pts system, glucose-specific IIa component	
60	 27.26       69106..70818    	 -	570	21622957	ptsI	BUsg061	-	phosphoenolpyruvate-protein phosphotransferase	
61	 27.91       70962..71219    	 -	85	21622959	ptsH	BUsg062	-	phosphocarrier protein H PR	
62	 28.38       71358..72326    	 -	322	21622960	cysK	BUsg063	-	cysteine synthase A	
63	 25.12       75128..76552    	 +	474	21622961	gltX	BUsg065	-	glutamyl-tRNA synthetase	
64	 17.97 -2    77072..77377    	 -	101	21622962	fliE	BUsg066	-	flagellar hook-basal body complex protein FliE	
65	 24.00       77554..79224    	 +	556	21622963	fliF	BUsg067	-	flagellar M-ring protein	
66	 21.79 -1    79221..80216    	 +	331	21622964	fliG	BUsg068	-	flagellar motor switch protein FliG	
67	 19.97 -1    80209..80874    	 +	221	21622965	fliH	BUsg069	-	flagellar assembly protein FliH	
68	 30.62 +1    80835..82235    	 +	466	21622966	fliI	BUsg070	-	flagellum-specific ATP synthase	
69	 16.34 -2    82270..82728    	 +	152	21622967	fliJ	BUsg071	-	flagellar FliJ protein	
70	 18.67 -1    82721..83866    	 +	381	21622968	fliK	BUsg072	-	flagellar hook-length control protein	
71	 18.48 -1    83971..84906    	 +	311	21622970	fliM	BUsg073	-	flagellar motor switch protein FliM	
72	 18.66 -1    84923..85324    	 +	133	21622971	fliN	BUsg074	-	flagellar motor switch protein FliN	
73	 25.44       85330..86469    	 +	379	21622972	fliP	BUsg075	-	flagellar biosynthetic protein FliP	
74	 30.04       86513..86785    	 +	90	21622973	fliQ	BUsg076	-	flagellar biosynthetic protein FliQ	
75	 21.24 -1    86785..87561    	 +	258	21622974	fliR	BUsg077	-	flagellar biosynthetic protein FliR	
76	 22.62       87690..87857    	 -	55	21622975	rpmG	BUsg078	-	50S ribosomal protein L33	
77	 29.54       87863..88099    	 -	78	21622976	rpmB	BUsg079	-	50S ribosomal protein L28	
78	 17.96 -2    88296..91202    	 +	968	21622977	ytfN	BUsg080	-	hypothetical 136.8 kda protein in msrA-chpB	
79	 27.26       91194..91736    	 -	180	21622978	ppa	BUsg081	-	inorganic pyrophosphatase	
80	 25.82       91921..93264    	 +	447	21622979	pmbA	BUsg082	-	PmbA	
81	 24.83       93737..94594    	 -	285	21622980	yraL	BUsg083	-	hypothetical 31.3 kD protein in agaI-mtr	
82	 29.25       94715..95938    	 +	407	21622982	fabB	BUsg084	-	3-oxoacyl-[acyl-carrier-protein] synthase I	
83	 27.97       96082..97032    	 +	316	21622983	tal	BUsg085	-	transaldolase	
84	 31.23 +1    97083..99080    	 +	665	21622984	tkt	BUsg086	-	transketolase	
85	 26.86       99170..100297   	 +	375	21622985	dapE	BUsg087	-	succinyl-diaminopimelate desuccinylase	
86	 30.40 +1   100663..101547   	 -	294	21622986	dapA	BUsg088	-	dihydrodipicolinate synthase	
87	 24.32      101886..102362   	 +	158	21622987	bcp	BUsg089	-	bacterioferritin comigratory protein	
88	 33.99 +1   102466..103527   	 -	353	21622988	aroC	BUsg090	-	chorismate synthase	
89	 27.12      103730..104260   	 +	176	21622989	Y098	BUsg091	-	hypothetical 21.2 kD protein	
90	 29.67      104585..105484   	 +	299	21622991	hisG	BUsg092	-	ATP phosphoribosyltransferase	
91	 27.45      105492..106799   	 +	435	21622992	hisD	BUsg093	-	histidinol dehydrogenase	
92	 26.03      106796..107863   	 +	355	21622993	hisC	BUsg094	-	histidinolphosphate aminotransferase	
93	 27.15      107890..108957   	 +	355	21622994	hisB	BUsg095	-	histidine biosynthesis bifunctional protein	
94	 25.93      108958..109551   	 +	197	21622995	hisH	BUsg096	-	amidotransferase	
95	 25.85      109558..110292   	 +	244	21622996	hisA	BUsg097	-	phosphoribosylformimino-5-aminoimidazole carboxamid	
96	 30.63 +1   110274..111050   	 +	258	21622997	hisF	BUsg098	-	cyclase	
97	 23.24      111044..111667   	 +	207	21622998	hisI	BUsg099	-	histidine biosynthesis bifunctional protein	
98	 27.99      112092..113513   	 +	473	21622999	gnd	BUsg100	-	6-phosphogluconate dehydrogenase	
99	 29.04      113675..114256   	 +	193	21623000	dcd	BUsg101	-	deoxycytidine triphosphate deaminase	
100	 24.36      114350..115987   	 +	545	21623001	metG	BUsg102	-	methionyl-tRNA synthetase	

 
 26.26 MEAN 
 
 3.96  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.