IslandPath Analysis: Buchnera sp. APS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 27.31   STD DEV: 3.70
Buchnera sp. APS complete genome - 0..640681
564 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 30.47         197..2083     	 +	628	15616631	gidA	BU001	D	glucose inhibited division protein A	
2	 27.64        2278..3102     	 +	274	15616632	atpB	BU002	C	ATP synthase A chain	
3	 36.25 +2     3139..3378     	 +	79	15616633	atpE	BU003	C	ATP synthase C chain	
4	 25.93        3497..3982     	 +	161	15616634	atpF	BU004	C	ATP synthase B chain	
5	 21.54 -1     3982..4515     	 +	177	15616635	atpH	BU005	C	ATP synthase delta chain	
6	 30.86        4530..6068     	 +	512	15616636	atpA	BU006	C	ATP synthase alpha chain	
7	 28.98        6101..6973     	 +	290	15616637	atpG	BU007	C	ATP synthase gamma chain	
8	 33.48 +1     6997..8394     	 +	465	15616638	atpD	BU008	C	ATP synthase beta chain	
9	 27.10        8421..8837     	 +	138	15616639	atpC	BU009	C	ATP synthase epsilon chain	
10	 28.11        8911..11322    	 -	803	15616640	gyrB	BU010	L	DNA gyrase subunit B	
11	 23.61 -1    11449..12549    	 -	366	15616641	dnaN	BU011	L	DNA polymerase III beta chain	
12	 29.01       12554..13918    	 -	454	15616642	dnaA	BU012	L	chromosomal replication initiator protein dnaA	
13	 31.94 +1    14369..14512    	 +	47	15616643	rpmH	BU013	J	50S ribosomal protein L34	
14	 24.71       14525..14872    	 +	115	15616644	rnpA	BU014	J	ribonuclease P protein component	
15	 26.83       15011..16609    	 +	532	15616645	yidC	BU015	N	60 kD inner-membrane protein	
16	 28.40       16651..18009    	 +	452	15616646	thdF	BU016	R	thiophene and furan oxidation protein thdF	
17	 35.40 +2    18376..18666    	 +	96	15616647	mopB	BU018	O	10 kD chaperonin	
18	 36.13 +2    18715..20361    	 +	548	15616648	mopA	BU019	O	60 kD chaperonin	
19	 27.12       20985..21596    	 +	203	15616649	efp	BU020	J	elongation factor P	
20	 29.69       21614..22354    	 -	246	15616650	dnaC	BU021	L	DNA replication protein dnaC	
21	 27.88       22354..22848    	 -	164	15616651	dnaT	BU022	-	primosomal protein I	
22	 23.44 -1    22945..23520    	 -	191	15616652	yhhF	BU023	L	hypothetical protein	
23	 25.07       23651..24787    	 +	378	15616653	ftsY	BU024	N	cell division protein ftsY	
24	 32.05 +1    24950..25804    	 +	284	15616654	rpoH	BU025	K	RNA polymerase sigma-32 factor	
25	 27.60       25945..27810    	 -	621	15616655	glmS	BU026	M	D-fructose-6-phosphate amidotransferase	
26	 26.01       27844..29223    	 -	459	15616656	glmU	BU027	M	UDP-N-acetylglucosamine pyrophosphorylase	
27	 20.53 -1    29403..29972    	 +	189	15616657	yigL	BU028	R	hypothetical protein	
28	 29.52       30011..30220    	 +	69	15616658	cof	BU029	R	cof protein	
29	 28.81       31191..33467    	 +	758	15616659	metE	BU030	E	5-methyltetrahydropteroyltriglutamate-homocystei ne S-methyltransferase	
30	 27.12       33590..35167    	 -	525	15616660	purH	BU031	F	phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase	
31	 26.88       35308..35586    	 -	92	15616661	hupA	BU032	L	DNA-binding protein hu-alpha	
32	 33.03 +1    36321..40544    	 -	1407	15616662	rpoC	BU033	K	DNA-directed RNA polymerase beta' chain	
33	 31.62 +1    40622..44650    	 -	1342	15616663	rpoB	BU034	K	DNA-directed RNA polymerase beta chain	
34	 31.71 +1    44871..45239    	 -	122	15616664	rplL	BU035	J	50S ribosomal protein L7/L12	
35	 28.71       45306..45803    	 -	165	15616665	rplJ	BU036	J	50S ribosomal protein L10	
36	 29.74       46069..46764    	 -	231	15616666	rplA	BU037	J	50S ribosomal protein L1	
37	 29.60       46767..47195    	 -	142	15616667	rplK	BU038	J	50S ribosomal protein L11	
38	 33.70 +1    47243..47788    	 -	181	15616668	nusG	BU039	K	transcription antitermination protein nusG	
39	 22.92 -1    47791..48174    	 -	127	15616669	secE	BU040	N	preprotein translocase secE subunit	
40	 24.00       48981..50051    	 -	356	15616670	murB	BU045	M	UDP-N-acetylenolpyruvoylglucosamine reductase	
41	 26.96       50166..51044    	 +	292	15616671	metF	BU046	E	5,10-methylenetetrahydrofolate reductase	
42	 28.18       51056..52201    	 -	381	15616672	argE	BU047	E	acetylornithine deacetylase	
43	 28.26       52362..53366    	 +	334	15616673	argC	BU048	E	N-acetyl-gamma-glutamyl-phosphate reductase	
44	 31.65 +1    53387..54160    	 +	257	15616674	argB	BU049	E	acetylglutamate kinase	
45	 32.43 +1    54190..55401    	 +	403	15616675	argG	BU050	E	argininosuccinate synthase	
46	 29.49       55473..56852    	 +	459	15616676	argH	BU051	E	argininosuccinate lyase	
47	 22.99 -1    56934..57368    	 +	144	15616677	yibN	BU052	P	hypothetical protein	
48	 25.17       57475..57903    	 +	142	15616678	secB	BU053	N	protein-export protein secB	
49	 29.82       58005..58829    	 +	274	15616679	cysE	BU054	E	serine acetyltransferase	
50	 31.48 +1    58935..60773    	 -	612	15616680	rpoD	BU055	K	RNA polymerase sigma factor rpoD	
51	 24.68       60941..62674    	 -	577	15616681	dnaG	BU056	L	DNA primase	
52	 37.96 +2    62755..62970    	 -	71	15616682	rpsU	BU057	J	30S ribosomal protein S21	
53	 28.39       63204..64214    	 +	336	15616683	ygjD	BU058	O	O-sialoglycoprotein endopeptidase	
54	 33.95 +1    64192..64839    	 -	215	15616684	ribB	BU059	H	3,4-dihydroxy-2-butanone 4-phosphate synthase	
55	 27.32       65111..66058    	 -	315	15616685	yb3052	BU060	M	kinase	
56	 26.51       66272..67516    	 +	414	15616686	cca	BU061	J	tRNA nucleotidyltransferase	
57	 22.68 -1    67542..68339    	 -	265	15616687	bacA	BU062	S	bacitracin resistance protein	
58	 26.34       68425..68910    	 -	161	15616688	crr	BU063	G	glucose-permease IIA component	
59	 27.56       68960..70675    	 -	571	15616689	ptsI	BU064	G	phosphoenolpyruvate-protein phosphotransferase	
60	 29.07       70824..71081    	 -	85	15616690	ptsH	BU065	G	phosphocarrier protein HPr	
61	 30.17       71230..72177    	 -	315	15616691	cysK	BU066	E	cysteine synthase A	
62	 25.84       72432..74459    	 +	675	15616692	lig	BU067	L	DNA ligase (NAD+)	
63	 26.35       74771..76174    	 +	467	15616693	gltX	BU070	J	glutamyl-tRNA synthetase	
64	 22.22 -1    76514..76810    	 -	98	15616694	fliE	BU072	N	flagellar hook-basal body complex protein fliE	
65	 25.58       77074..78711    	 +	545	15616695	fliF	BU073	N	flagellar M-ring protein	
66	 25.10       78708..79703    	 +	331	15616696	fliG	BU074	N	flagellar motor switch protein fliG	
67	 22.78 -1    79696..80358    	 +	220	15616697	fliH	BU075	N	flagellar assembly protein fliH	
68	 29.70       80316..81719    	 +	467	15616698	fliI	BU076	N	flagellum-specific ATP synthase	
69	 20.55 -1    81749..82186    	 +	145	15616699	fliJ	BU077	N	flagellar fliJ protein	
70	 16.81 -2    82195..82533    	 +	112	15616700	yba1	BU078	-	hypothetical protein	
71	 19.49 -2    82624..83331    	 +	235	15616701	fliK	BU079	N	flagellar hook-length control protein	
72	 20.78 -1    83392..84339    	 +	315	15616702	fliM	BU080	N	flagellar motor switch protein fliM	
73	 22.39 -1    84332..84733    	 +	133	15616703	fliN	BU081	N	flagellar motor switch protein fliN	
74	 27.37       84745..85884    	 +	379	15616704	fliP	BU082	N	flagellar biosynthetic protein fliP	
75	 27.04       85956..86225    	 +	89	15616705	fliQ	BU083	N	flagellar biosynthetic protein fliQ	
76	 22.91 -1    86225..87001    	 +	258	15616706	fliR	BU084	N	flagellar biosynthetic protein fliR	
77	 25.60       87154..87321    	 -	55	15616707	rpmG	BU085	J	50S ribosomal protein L33	
78	 27.19       87332..87559    	 -	75	15616708	rpmB	BU086	J	50S ribosomal protein L28	
79	 18.74 -2    87905..90817    	 +	970	15616709	ytfN	BU087	S	hypothetical protein	
80	 27.32       90833..91381    	 -	182	15616710	ppa	BU088	C	inorganic pyrophosphatase	
81	 27.22       91575..92915    	 +	446	15616711	pmbA	BU089	R	pmbA protein	
82	 24.85       93393..94241    	 -	282	15616712	yraL	BU091	R	hypotheical protein	
83	 31.45 +1    94380..95600    	 +	406	15616713	fabB	BU092	I	3-oxoacyl-[acyl-carrier-protein] synthase I	
84	 30.18       95840..96790    	 +	316	15616714	talA	BU093	G	transaldolase A	
85	 31.98 +1    96845..98842    	 +	665	15616715	tktB	BU094	G	transketolase	
86	 28.81       98947..100074   	 +	375	15616716	dapE	BU095	E	succinyl-diaminopimelate desuccinylase	
87	 32.09 +1   100464..101348   	 -	294	15616717	dapA	BU096	E	dihydrodipicolinate synthase	
88	 35.77 +2   101924..102988   	 -	354	15616718	aroC	BU097	E	chorismate synthase	
89	 27.09      103284..103844   	 +	186	15616719	yb2331	BU098	S	hypothetical protein	
90	 30.67      104169..105068   	 +	299	15616720	hisG	BU099	E	ATP phosphoribosyltransferase	
91	 29.97      105077..106384   	 +	435	15616721	hisD	BU100	E	histidinol dehydrogenase	
92	 26.65      106381..107487   	 +	368	15616722	hisC	BU101	E	histidinol-phosphate aminotransferase	
93	 28.53      107477..108538   	 +	353	15616723	hisB	BU102	E	imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase	
94	 26.57      108538..109128   	 +	196	15616724	hisH	BU103	E	amidotransferase hisH	
95	 28.61      109133..109873   	 +	246	15616725	hisA	BU104	E	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	
96	 30.37      109852..110628   	 +	258	15616726	hisF	BU105	E	hisF protein	
97	 26.08      110622..111269   	 +	215	15616727	hisI	BU106	E	phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase	
98	 28.93      111628..113034   	 +	468	15616728	gnd	BU107	G	6-phosphogluconate dehydrogenase (decarboxylating)	
99	 29.95      113197..113817   	 +	206	15616729	dcd	BU108	F	deoxycytidine triphosphate deaminase	
100	 25.24      113965..115608   	 +	547	15616730	metG	BU109	J	methionyl-tRNA synthetase	

 
 27.31 MEAN 
 
 3.70  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.