IslandPath Analysis: Bacillus subtilis 168



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.32   STD DEV: 4.61
Bacillus subtilis, complete genome - 0..4214814
4112 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 40.12         410..1750     	 +	446	16077069	dnaA	Bsu0001	L	alternate gene name: dnaH, dnaJ, dnaK	
2	 39.93        1939..3075     	 +	378	16077070	dnaN	Bsu0002	L	DNA polymerase III (beta subunit)	
3	 43.52        3206..3421     	 +	71	16077071	yaaA	Bsu0003	S	similar to hypothetical proteins	
4	 45.55        3437..4549     	 +	370	16077072	recF	Bsu0004	L	recF	
5	 38.99        4567..4725     	 +	52	16077073	yaaB	Bsu0005	-	yaaB	
6	 45.02        4866..6782     	 +	638	16077074	gyrB	Bsu0006	L	DNA gyrase (subunit B)	
7	 44.40        6993..9458     	 +	821	16077075	gyrA	Bsu0007	L	DNA gyrase (subunit A)	
8	 34.60 -1    14845..15792    	 -	315	16077076	yaaC	Bsu0008	-	yaaC	
9	 43.49       15913..17379    	 +	488	16077077	guaB	Bsu0009	R	inositol-monophosphate dehydrogenase	
10	 40.54       17532..18863    	 +	443	16077078	dacA	Bsu0010	M	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)	
11	 45.99       19060..19944    	 +	294	16077079	yaaD	Bsu0011	H	similar to hypothetical proteins	
12	 46.36       19966..20556    	 +	196	16077080	yaaE	Bsu0012	H	similar to hypothetical proteins	
13	 44.44       20878..22155    	 +	425	16077081	serS	Bsu0013	J	seryl-tRNA synthetase	
14	 37.61 -1    22494..23147    	 -	217	16077082	yaaF	Bsu0014	F	similar to deoxypurine kinase subunit	
15	 40.54       23144..23767    	 -	207	16077083	yaaG	Bsu0015	F	similar to deoxypurine kinase subunit	
16	 45.95       23866..25149    	 -	427	16077084	yaaH	Bsu0016	R	similar to hypothetical proteins	
17	 37.73 -1    25219..25764    	 -	181	16077085	yaaI	Bsu0017	Q	similar to isochorismatase	
18	 45.47       25850..26335    	 +	161	16077086	yaaJ	Bsu0018	F	similar to hypothetical proteins	
19	 43.62       26812..28503    	 +	563	16077087	dnaX	Bsu0019	L	DNA polymerase III (gamma and tau subunits)	
20	 39.51       28527..28850    	 +	107	16077088	yaaK	Bsu0020	S	similar to hypothetical proteins	
21	 43.22       28865..29461    	 +	198	16077089	recR	Bsu0021	L	alternate gene name: recM	
22	 37.78 -1    29479..29703    	 +	74	16077090	yaaL	Bsu0022	-	yaaL	
23	 38.64 -1    29770..30033    	 +	87	16077091	bofA	Bsu0023	-	integral membrane protein	
24	 32.31 -2    35529..35723    	 +	64	16077092	csfB	Bsu0024	-	alternate gene name: yaaM~sigma-F transcribed gene	
25	 36.91 -1    35843..36457    	 +	204	16077093	xpaC	Bsu0025	-	xpaC	
26	 40.31       36476..37636    	 +	386	16077094	yaaN	Bsu0026	P	similar to toxic cation resistance	
27	 42.97       37718..39160    	 +	480	16077095	yaaO	Bsu0027	E	similar to lysine decarboxylase	
28	 41.31       39157..39795    	 +	212	16077096	tmk	Bsu0028	F	thymidylate kinase	
29	 41.82       39869..40198    	 +	109	16077097	yaaQ	Bsu0029	S	similar to hypothetical proteins	
30	 36.96 -1    40211..40651    	 +	146	16077098	yaaR	Bsu0030	S	yaaR	
31	 41.72       40663..41652    	 +	329	16077099	holB	Bsu0031	L	DNA polymerase III (delta' subunit)	
32	 42.87       41655..42482    	 +	275	16077100	yaaT	Bsu0032	S	similar to signal peptidase II	
33	 37.78 -1    42497..42856    	 +	119	16077101	yabA	Bsu0033	-	yabA	
34	 42.34       42915..43658    	 +	247	16077102	yabB	Bsu0034	Q	similar to hypothetical proteins	
35	 40.33       43645..43944    	 +	99	16077103	yazA	Bsu0035	L	similar to hypothetical proteins	
36	 43.23       43919..44797    	 +	292	16077104	yabC	Bsu0036	R	similar to hypothetical proteins	
37	 35.40 -1    44846..45136    	 -	96	16077105	abrB	Bsu0037	K	transcriptional regulator	
38	 42.11       45631..47625    	 +	664	16077106	metS	Bsu0038	R	methionyl-tRNA synthetase	
39	 42.32       47704..48471    	 +	255	16077107	yabD	Bsu0039	L	similar to hypothetical proteins	
40	 41.55       48627..49940    	 +	437	16077108	yabE	Bsu0040	S	similar to hypothetical proteins	
41	 46.17       50085..50645    	 +	186	16077109	yabF	Bsu0041	L	similar to hypothetical proteins	
42	 43.46       50638..51516    	 +	292	16077110	ksgA	Bsu0042	J	dimethyladenosine transferase	
43	 42.27       51678..52550    	 +	290	16077111	yabG	Bsu0043	-	yabG	
44	 42.15       52761..53021    	 +	86	16077112	veg	Bsu0044	-	veg	
45	 45.70       53181..53366    	 +	61	16077113	sspF	Bsu0045	-	small acid-soluble spore protein (alpha/beta-type SASP)	
46	 48.05 +1    53514..54383    	 +	289	16077114	yabH	Bsu0046	I	similar to hypothetical proteins	
47	 42.66       54439..55296    	 +	285	16077115	purR	Bsu0047	F	transcriptional regulator	
48	 44.18       55293..55670    	 +	125	16077116	yabJ	Bsu0048	J	similar to hypothetical proteins	
49	 44.90       55864..56157    	 +	97	16077117	spoVG	Bsu0049	M	spoVG	
50	 43.18       56350..57720    	 +	456	16077118	gcaD	Bsu0050	M	UDP-N-acetylglucosamine pyrophosphorylase	
51	 42.66       57743..58696    	 +	317	16077119	prs	Bsu0051	F	phosphoribosyl pyrophosphate synthetase	
52	 46.18       58781..59395    	 +	204	16077120	ctc	Bsu0052	J	general stress protein	
53	 43.56       59502..60068    	 +	188	16077121	spoVC	Bsu0053	J	thermosensitive mutant blocks spore coat formation (stage V sporulation)	
54	 38.53 -1    60128..60358    	 +	76	16077122	yabK	Bsu0054	-	yabK	
55	 45.16       60428..63961    	 +	1177	16077123	mfd	Bsu0055	L	transcription-repair coupling factor	
56	 45.07       64097..64633    	 +	178	16077124	spoVT	Bsu0056	K	transcriptional regulator	
57	 44.47       64815..66413    	 +	532	16077125	yabM	Bsu0057	R	similar to amino acid transporter	
58	 44.83       66403..67872    	 +	489	16077126	yabN	Bsu0058	R	similar to hypothetical proteins	
59	 41.38       67875..68135    	 +	86	16077127	yabO	Bsu0059	J	similar to hypothetical proteins	
60	 39.27       68214..68516    	 +	100	16077128	yabP	Bsu0060	-	yabP	
61	 38.99       68513..69148    	 +	211	16077129	yabQ	Bsu0061	-	yabQ	
62	 39.95       69166..69543    	 +	125	16077130	divIC	Bsu0062	O	cell-division initiation protein	
63	 39.79       69624..70010    	 +	128	16077131	yabR	Bsu0063	J	similar to polyribonucleotide nucleotidyltransferase	
64	 43.76       70536..73019    	 +	827	16077132	spoIIE	Bsu0064	T	serine phosphatase	
65	 46.21       73104..73841    	 +	245	16077133	yabS	Bsu0065	R	similar to hypothetical proteins	
66	 43.62       73930..74823    	 +	297	16077134	yabT	Bsu0066	T	yabT	
67	 44.05       74927..76345    	 +	472	16077135	yacA	Bsu0067	D	similar to cell-cycle protein	
68	 39.23       76342..76884    	 +	180	16077136	hprT	Bsu0068	F	hypoxanthine-guanine phosphoribosyltransferase	
69	 45.98       76982..78895    	 +	637	16077137	ftsH	Bsu0069	O	cell-division protein and general stress protein (class III heat-shock)	
70	 43.45       79090..79791    	 +	233	16077138	yacB	Bsu0070	K	similar to hypothetical proteins	
71	 44.41       79877..80752    	 +	291	16077139	yacC	Bsu0071	O	similar to hypothetical proteins	
72	 40.38       80799..81692    	 +	297	16077140	yacD	Bsu0072	O	similar to protein secretion PrsA homolog	
73	 45.52       81768..82694    	 +	308	16077141	cysK	Bsu0073	E	cysteine synthetase A	
74	 42.75       82861..84273    	 +	470	16077142	pabB	Bsu0074	E	para-aminobenzoate synthase (subunit A)	
75	 45.30       84287..84871    	 +	194	16077143	pabA	Bsu0075	E	para-aminobenzoate synthase glutamine amidotransferase (subunit B)	
76	 43.88       84871..85752    	 +	293	16077144	pabC	Bsu0076	E	aminodeoxychorismate lyase	
77	 47.55       85734..86591    	 +	285	16077145	sul	Bsu0077	H	dihydropteroate synthase	
78	 43.53       86584..86946    	 +	120	16077146	folA	Bsu0078	H	dihydroneopterin aldolase	
79	 43.06       86943..87446    	 +	167	16077147	folK	Bsu0079	H	7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase	
80	 42.86       87398..87607    	 +	69	16077148	yazB	Bsu0080	K	yazB	
81	 44.81       87631..88632    	 +	333	16077149	yacF	Bsu0081	R	similar to transcriptional regulator (nitrogen regulation protein)	
82	 43.33       88724..90223    	 +	499	16077150	lysS	Bsu0082	J	lysyl-tRNA synthetase	
83	 33.98 -2   101446..101910   	 +	154	16077151	ctsR	Bsu0083	-	transcriptional regulator	
84	 37.10 -1   101924..102481   	 +	185	16077152	yacH	Bsu0084	S	similar to hypothetical proteins	
85	 41.85      102481..103572   	 +	363	16077153	yacI	Bsu0085	E	similar to creatine kinase	
86	 43.53      103569..106001   	 +	810	16077154	clpC	Bsu0086	O	class III stress response-related ATPase	
87	 45.03      106093..107469   	 +	458	16077155	sms	Bsu0087	O	DNA repair protein homolog	
88	 40.35      107473..108555   	 +	360	16077156	yacK	Bsu0088	R	yacK	
89	 40.24      108671..109771   	 +	366	16077157	yacL	Bsu0089	R	similar to hypothetical proteins	
90	 47.93      109786..110484   	 +	232	16077158	yacM	Bsu0090	I	similar to hypothetical proteins	
91	 46.54      110477..110953   	 +	158	16077159	yacN	Bsu0091	I	similar to hypothetical proteins	
92	 43.18      111044..112495   	 +	483	16077160	gltX	Bsu0092	J	glutamyl-tRNA synthetase	
93	 43.58      112797..113450   	 +	217	16077161	cysE	Bsu0093	E	serine acetyltransferase	
94	 43.47      113447..114847   	 +	466	16077162	cysS	Bsu0094	J	cysteinyl-tRNA synthetase	
95	 42.13      114851..115282   	 +	143	16077163	yazC	Bsu0095	S	similar to hypothetical proteins	
96	 47.47      115266..116015   	 +	249	16077164	yacO	Bsu0096	J	similar to hypothetical proteins	
97	 44.44      116022..116534   	 +	170	16077165	yacP	Bsu0097	R	similar to hypothetical proteins	
98	 40.49      116597..117253   	 +	218	16077166	sigH	Bsu0098	K	RNA polymerase sigma-30 factor (sigma-H)	
99	 38.67 -1   117346..117495   	 +	49	16077167	rpmG	Bsu0099	J	ribosomal protein L33	
100	 31.11 -2   117529..117708   	 +	59	16077168	secE	Bsu0100	N	preprotein translocase subunit	

 
 43.32 MEAN 
 
 4.61  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.