IslandPath Analysis: Brucella suis 1330 chromosome II



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 56.92   STD DEV: 4.54
Brucella suis 1330 chromosome II, complete sequence - 0..1207381
1148 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 54.10         155..1348     	 +	397	23499768	repC	BRA0001	-	replication initiation protein RepC	
2	 47.33 -2     1413..1562     	 -	49	23499769	-	BRA0002	-	hypothetical protein	
3	 52.27 -1     1551..1814     	 +	87	23499770	-	BRA0003	-	hypothetical protein	
4	 51.75 -1     1963..2076     	 +	37	23499771	-	BRA0004	-	hypothetical protein	
5	 62.00 +1     2092..3033     	 +	313	23499772	-	BRA0005	-	ribokinase, putative	
6	 56.46        3110..4108     	 -	332	23499773	iunH	BRA0006	-	inosine-uridine preferring nucleoside hydrolase	
7	 63.16 +1     4131..5042     	 -	303	23499774	-	BRA0007	-	ABC transporter, permease protein	
8	 62.04 +1     5039..6118     	 -	359	23499775	-	BRA0008	-	ABC transporter, permease protein, putative	
9	 62.47 +1     6180..7751     	 -	523	23499776	-	BRA0009	-	ABC transporter, ATP-binding protein	
10	 56.01        7754..8860     	 -	368	23499777	-	BRA0010	-	lipoprotein, Bmp family	
11	 58.46        9104..9712     	 +	202	23499778	-	BRA0011	-	conserved hypothetical protein	
12	 62.24 +1     9684..10316    	 -	210	23499779	-	BRA0012	-	enterobactin synthetase, component D, putative	
13	 61.52 +1    10399..11175    	 -	258	23499780	entA	BRA0013	-	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase	
14	 60.94       11175..12047    	 -	290	23499781	entB	BRA0014	-	isochorismatase	
15	 60.86       12099..13718    	 -	539	23499782	entE	BRA0015	-	2,3-dihydroxybenzoate-AMP ligase	
16	 61.56 +1    13825..15000    	 -	391	23499783	entC	BRA0016	-	isochorismate synthase	
17	 58.87       15072..16481    	 +	469	23499784	-	BRA0017	-	enterobactin synthetase, component F, putative	
18	 58.05       16529..17317    	 -	262	23499785	-	BRA0018	-	oxidoreductase, molybdopterin-binding	
19	 55.93       17314..18123    	 -	269	23499786	-	BRA0019	-	HupC/HyaC/HydC family protein	
20	 50.83 -1    18184..18423    	 -	79	23499787	-	BRA0020	-	conserved hypothetical protein	
21	 59.81       18608..19132    	 +	174	23499788	-	BRA0021	-	RNA polymerase sigma-70 factor, ECF subfamily	
22	 64.15 +1    19122..19757    	 +	211	23499789	-	BRA0022	-	conserved hypothetical protein	
23	 58.57       19803..20543    	 -	246	23499790	-	BRA0023	-	transcriptional regulator, GntR family	
24	 55.58       20661..22076    	 +	471	23499791	-	BRA0024	-	branched chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative	
25	 57.58       22118..23107    	 +	329	23499792	-	BRA0025	-	branched-chain amino acid ABC transporter, permease protein	
26	 61.43       23111..24331    	 +	406	23499793	-	BRA0026	-	branched-chain amino acid ABC transporter, permease protein	
27	 58.83       24331..25083    	 +	250	23499794	-	BRA0027	-	branched-chain amino acid ABC transporter, ATP-binding protein	
28	 58.72       25083..25799    	 +	238	23499795	-	BRA0028	-	branched-chain amino acid ABC transporter, ATP-binding protein	
29	 61.08       25851..26333    	 +	160	23499796	-	BRA0029	-	glyoxalase family protein	
30	 59.08       26337..27074    	 +	245	23499797	-	BRA0030	-	3-oxoacyl-(acyl-carrier-protein) reductase, putative	
31	 63.48 +1    27092..27844    	 +	250	23499798	-	BRA0031	-	oxidoreductase, short chain dehydrogenase/reductase family	
32	 62.24 +1    27954..30143    	 +	729	23499799	-	BRA0032	-	acetoin dehydrogenase, alpha/beta subunit, putative	
33	 61.61 +1    30162..31427    	 +	421	23499800	-	BRA0033	-	acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase, putative	
34	 61.70 +1    31528..32313    	 +	261	23499801	-	BRA0034	-	shikimate dehydrogenase family protein	
35	 64.63 +1    32593..32886    	 +	97	23499802	-	BRA0035	-	hypothetical protein	
36	 59.57       32840..33121    	 -	93	23499803	-	BRA0036	-	hypothetical protein	
37	 59.27       33239..35956    	 +	905	23499804	-	BRA0037	-	magnesium ion-transporting ATPase, E1-E2 family	
38	 64.67 +1    36041..36391    	 +	116	23499805	-	BRA0038	-	hypothetical protein	
39	 60.78       36522..36725    	 +	67	23499806	-	BRA0039	-	hypothetical protein	
40	 59.14       36727..37443    	 +	238	23499807	-	BRA0040	-	MgtC family protein	
41	 57.89       37518..38588    	 +	356	23499808	-	BRA0041	-	sensor histidine kinase	
42	 55.24       38585..39223    	 +	212	23499809	-	BRA0042	-	DNA-binding response regulator, LuxR family	
43	 54.27       39609..39971    	 -	120	23499810	-	BRA0043	-	response regulator	
44	 58.36       40290..41180    	 +	296	23499811	-	BRA0044	-	formiminoglutamase, putative	
45	 61.13       41342..42118    	 +	258	23499812	-	BRA0045	-	inositol monophosphatase family protein	
46	 61.24       42169..43164    	 -	331	23499813	-	BRA0046	-	lysophospholipase L2, putative	
47	 49.07 -1    43204..43419    	 -	71	23499814	-	BRA0047	-	hypothetical protein	
48	 62.16 +1    43514..43912    	 -	132	23499815	-	BRA0048	-	hypothetical protein	
49	 48.57 -1    43964..44173    	 +	69	23499816	-	BRA0049	-	hypothetical protein	
50	 54.76       44146..44397    	 +	83	23499817	-	BRA0050	-	hypothetical protein	
51	 55.63       44476..44946    	 +	156	23499818	ibpA	BRA0051	-	16 kDa heat shock protein A	
52	 60.00       45084..46133    	 -	349	23499819	-	BRA0052	-	threonine aldolase, low-specificity, putative	
53	 55.79       46402..46686    	 -	94	23499820	-	BRA0053	-	hypothetical protein	
54	 60.31       46776..51527    	 +	1583	23499821	gltB	BRA0054	-	glutamate synthase, large subunit	
55	 60.41       51609..53063    	 +	484	23499822	gltD	BRA0055	-	glutamate synthase, small subunit	
56	 52.92       53108..54511    	 -	467	23499823	-	BRA0056	-	amino acid permease family protein	
57	 58.85       54733..55884    	 -	383	23499824	-	BRA0057	-	conserved hypothetical protein	
58	 57.42       56135..56653    	 -	172	23499825	-	BRA0058	-	lipoprotein, putative	
59	 58.66       56802..57887    	 -	361	23499826	-	BRA0059	-	type IV secretion system protein VirB11	
60	 58.76       57868..59043    	 -	391	23499827	-	BRA0060	-	type IV secretion system protein VirB10	
61	 57.59       59040..59909    	 -	289	23499828	-	BRA0061	-	type IV secretion system protein VirB9	
62	 55.83       59906..60625    	 -	239	23499829	-	BRA0062	-	type IV secretion system protein VirB8	
63	 58.05       60628..60801    	 -	57	23499830	-	BRA0063	-	type IV secretion system protein VirB7	
64	 55.46       60965..62008    	 -	347	23499831	-	BRA0064	-	type IV secretion system protein VirB6	
65	 56.21       62192..62908    	 -	238	23499832	-	BRA0065	-	type IV secretion system protein VirB5	
66	 55.57       62913..65408    	 -	831	23499833	-	BRA0066	-	type IV secretion system protein VirB4	
67	 55.56       65408..65758    	 -	116	23499834	-	BRA0067	-	type IV secretion system protein VirB3	
68	 56.29       65772..66089    	 -	105	23499835	-	BRA0068	-	type IV secretion system protein VirB2	
69	 56.76       66525..67241    	 -	238	23499836	-	BRA0069	-	type IV secretion system protein VirB1	
70	 59.17       67745..68971    	 -	408	23499837	-	BRA0070	-	transglycosylase, putative	
71	 57.05       69383..70276    	 +	297	23499838	galU	BRA0071	-	UTP--glucose-1-phosphate uridylyltransferase	
72	 60.17       70329..71867    	 -	512	23499839	-	BRA0072	-	conserved hypothetical protein	
73	 59.68       72008..73009    	 +	333	23499840	-	BRA0073	-	sugar isomerase, KpsF/GutQ	
74	 57.69       73148..73615    	 -	155	23499841	-	BRA0074	-	conserved hypothetical protein	
75	 59.07       73636..74622    	 -	328	23499842	-	BRA0075	-	SPFH domain/Band 7 family protein	
76	 58.17       74755..75813    	 -	352	23499843	hemH	BRA0076	-	ferrochelatase	
77	 60.37       75951..76331    	 -	126	23499844	omp10	BRA0077	-	lipoprotein Omp10	
78	 58.09       76473..77918    	 -	481	23499845	-	BRA0078	-	homospermidine synthase	
79	 59.47       78030..78710    	 -	226	23499846	-	BRA0079	-	para-aminobenzoate synthase, component I	
80	 59.32       78644..79813    	 -	389	23499847	-	BRA0080	-	para-aminobenzoate synthase, component I	
81	 56.79       79823..81685    	 -	620	23499848	pepF	BRA0081	-	oligoendopeptidase F	
82	 59.49       82033..83523    	 +	496	23499849	-	BRA0082	-	sigma-54 dependent DNA-binding response regulator	
83	 64.05 +1    83864..85777    	 +	637	23499850	-	BRA0083	-	conserved hypothetical protein	
84	 57.71       87371..88297    	 +	308	23499851	-	BRA0086	-	rhodanese family protein	
85	 55.07       88332..88538    	 +	68	23499852	-	BRA0087	-	hypothetical protein	
86	 56.75       88578..89333    	 +	251	23499853	modA	BRA0088	-	molybdenum ABC transporter, periplasmic molybdenum-binding protein	
87	 59.97       89344..90030    	 +	228	23499854	modB	BRA0089	-	molybdenum ABC transporter, permease protein	
88	 61.30       90027..91106    	 +	359	23499855	modC	BRA0090	-	molybdenum ABC transporter, ATP-binding protein	
89	 55.90       91176..91853    	 +	225	23499856	-	BRA0091	-	acetyltransferase, GNAT family	
90	 55.71       91840..92049    	 +	69	23499857	-	BRA0092	-	conserved hypothetical protein	
91	 37.01 -2    92101..92454    	 -	117	23499858	-	BRA0094	-	hypothetical protein	
92	 45.51 -2    92141..92296    	 +	51	23499859	-	BRA0093	-	hypothetical protein	
93	 37.72 -2    92511..92852    	 -	113	23499860	-	BRA0095	-	hypothetical protein	
94	 59.51       92994..94097    	 -	367	23499861	-	BRA0096	-	conserved hypothetical protein	
95	 54.18       94097..94801    	 -	234	23499862	-	BRA0097	-	conserved hypothetical protein	
96	 59.62       94841..95734    	 -	297	23499863	-	BRA0098	-	transcriptional regulator, LysR family	
97	 60.12       95738..96943    	 -	401	23499864	-	BRA0099	-	conserved hypothetical protein	
98	 60.05       97528..98661    	 +	377	23499865	-	BRA0100	-	decarboxylase, ornithine/DAP/arginine decarboxylase family 2	
99	 59.69       98737..100455   	 -	572	23499866	-	BRA0101	-	polysaccharide accessory transport protein, putative	
100	 38.41 -2   100472..100609   	 -	45	23499867	-	BRA0102	-	hypothetical protein	

 
 56.92 MEAN 
 
 4.54  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.