IslandPath Analysis: Brucella suis 1330 chromosome I



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 56.99   STD DEV: 4.33
Brucella suis 1330 chromosome I, complete sequence - 0..2107792
2116 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 60.23         784..2274     	 +	496	23500917	dnaA	BR0001	-	chromosomal replication initiator protein DnaA	
2	 58.79        2503..3696     	 +	397	23500918	dnaN	BR0002	-	DNA polymerase III, beta subunit	
3	 61.30        3878..5032     	 +	384	23500919	recF	BR0003	-	recF protein	
4	 61.43 +1     5070..5852     	 +	260	23500920	moeB	BR0004	-	molybdopterin biosynthesis protein MoeB	
5	 57.47        5869..6825     	 -	318	23500921	-	BR0005	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein	
6	 59.10        6822..8447     	 -	541	23500922	-	BR0006	-	ABC transporter, ATP-binding protein	
7	 58.16        8471..9610     	 -	379	23500923	-	BR0007	-	ABC transporter, permease protein	
8	 55.92        9610..10707    	 -	365	23500924	-	BR0008	-	ABC transporter, permease protein	
9	 57.74       10819..12633    	 -	604	23500925	-	BR0009	-	ABC transporter, periplasmic substrate-binding protein, putative	
10	 55.97       12680..14548    	 -	622	23500926	-	BR0010	-	ABC transporter, periplasmic substrate-binding protein, putative	
11	 53.40       14779..15102    	 -	107	23500927	-	BR0011	-	hypothetical protein	
12	 47.76 -2    15148..15348    	 -	66	23500928	-	BR0012	-	hypothetical protein	
13	 36.47 -2    15388..15738    	 -	116	23500929	-	BR0013	-	hypothetical protein	
14	 59.26       16003..17109    	 -	368	23500930	-	BR0014	-	branched-chain amino acid ABC transporter, perisplasmic amino acid-binding protein, putative	
15	 52.74       17381..17581    	 +	66	23500931	-	BR0015	-	conserved domain protein	
16	 61.64 +1    17578..18372    	 -	264	23500932	-	BR0016	-	enoyl-CoA hydratase/isomerase family protein	
17	 62.12 +1    19224..21245    	 -	673	23500933	-	BR0018	-	biotin carboxylase	
18	 62.25 +1    21257..22864    	 -	535	23500934	-	BR0019	-	carboxyl transferase family protein	
19	 59.09       22864..24012    	 -	382	23500935	ivd	BR0020	-	isovaleryl-CoA dehydrogenase	
20	 59.98       24189..26177    	 -	662	23500936	-	BR0021	-	acetoacetyl-CoA synthase	
21	 53.33       26362..26796    	 -	144	23500937	-	BR0022	-	conserved hypothetical protein	
22	 54.81       26973..28094    	 -	373	23500938	-	BR0023	-	conserved hypothetical protein	
23	 55.99       28617..29000    	 -	127	23500939	-	BR0024	-	conserved hypothetical protein	
24	 61.20       29385..30737    	 +	450	23500940	aroA	BR0025	-	3-phosphoshikimate 1-carboxyvinyltransferase	
25	 62.42 +1    30734..31393    	 +	219	23500941	cmk	BR0026	-	cytidylate kinase	
26	 58.02       31609..33309    	 +	566	23500942	rpsA	BR0027	-	ribosomal protein S1	
27	 59.84       33727..34737    	 -	336	23500943	-	BR0028	-	conserved hypothetical protein	
28	 57.33       34853..35752    	 +	299	23500944	-	BR0029	-	transcriptional regulator, LysR family	
29	 29.17 -2    35746..36321    	 -	191	23500945	-	BR0030	-	membrane protein, putative	
30	 55.22       36357..37640    	 -	427	23500946	-	BR0031	-	transglycosylase, putative	
31	 60.73       37656..38261    	 -	201	23500947	recR	BR0032	-	recombination protein RecR	
32	 59.88       38392..38715    	 -	107	23500948	-	BR0033	-	conserved hypothetical protein TIGR00103	
33	 61.80 +1    38740..40548    	 -	602	23500949	dnaX	BR0034	-	DNA polymerase III, gamma and tau subunits	
34	 61.73 +1    40829..41233    	 +	134	23500950	-	BR0035	-	conserved hypothetical protein	
35	 60.02       41262..42209    	 +	315	23500951	-	BR0036	-	MutT/nudix family protein	
36	 58.68       42210..43073    	 -	287	23500952	pheA	BR0037	-	prephenate dehydratase	
37	 60.45       43162..43917    	 -	251	23500953	kdsB	BR0038	-	3-deoxy-manno-octulosonate cytidylyltransferase	
38	 56.98       44295..44903    	 +	202	23500954	-	BR0039	-	cytochrome c, membrane-bound	
39	 61.70 +1    44948..45913    	 -	321	23500955	-	BR0040	-	conserved hypothetical protein	
40	 50.49 -1    45969..46277    	 +	102	23500956	-	BR0041	-	hypothetical protein	
41	 55.75       46440..47465    	 +	341	23500957	cyoA	BR0042	-	ubiquinol oxidase, subunit II	
42	 58.03       47545..49524    	 +	659	23500958	qoxB	BR0043	-	ubiquinol oxidase subunit I	
43	 57.94       49528..50157    	 +	209	23500959	-	BR0044	-	ubiquinol oxidase subunit III	
44	 55.19       50157..50522    	 +	121	23500960	qoxD	BR0045	-	ubiquinol oxidase subunit IV	
45	 50.54 -1    50519..50797    	 -	92	23500961	-	BR0046	-	hypothetical protein	
46	 64.29 +1    50973..51560    	 +	195	23500962	-	BR0047	-	conserved domain protein	
47	 59.27       52156..54075    	 +	639	23500963	-	BR0048	-	conserved hypothetical protein	
48	 59.89       54264..58811    	 +	1515	23500964	-	BR0049	-	conserved hypothetical protein	
49	 57.44       58956..59681    	 +	241	23500965	-	BR0050	-	lipoprotein, putative	
50	 55.56       59732..59947    	 -	71	23500966	-	BR0051	-	hypothetical protein	
51	 59.52       60017..60520    	 -	167	23500967	-	BR0052	-	hypothetical protein	
52	 61.35 +1    60857..61063    	 -	68	23500968	-	BR0053	-	hypothetical protein	
53	 58.61       61074..62078    	 -	334	23500969	-	BR0054	-	conserved hypothetical protein	
54	 59.90       62213..62611    	 -	132	23500970	-	BR0055	-	hypothetical protein	
55	 58.59       62864..63259    	 -	131	23500971	-	BR0056	-	glyoxalase family protein	
56	 62.20 +1    63456..64619    	 +	387	23500972	-	BR0057	-	mrp-related protein	
57	 57.90       64824..66455    	 -	543	23500973	pgm	BR0058	-	phosphoglucomutase	
58	 44.62 -2    66511..66696    	 -	61	23500974	-	BR0059	-	hypothetical protein	
59	 59.84       66671..67564    	 -	297	23500975	-	BR0060	-	transcriptional regulator, LysR family	
60	 54.65       67689..68612    	 +	307	23500976	-	BR0061	-	dienelactone hydrolase domain protein	
61	 58.94       68685..69383    	 +	232	23500977	-	BR0062	-	kinase-related protein	
62	 58.99       69483..70172    	 +	229	23500978	-	BR0063	-	fumarylacetoacetate hydrolase family protein	
63	 52.60 -1    70192..70383    	 +	63	23500979	-	BR0064	-	conserved hypothetical protein	
64	 46.30 -2    70445..70660    	 +	71	23500980	-	BR0065	-	hypothetical protein	
65	 51.85 -1    70826..71014    	 +	62	23500981	-	BR0066	-	conserved hypothetical protein	
66	 62.50 +1    71029..71892    	 +	287	23500982	-	BR0067	-	Transglycosylase SLT domain protein	
67	 57.84       72078..72734    	 +	218	23500983	-	BR0068	-	channel protein, hemolysin III family	
68	 60.42       72875..76108    	 -	1077	23500984	dnaE-1	BR0069	-	DNA polymerase III, alpha subunit	
69	 64.81 +1    76108..77559    	 -	483	23500985	-	BR0070	-	conserved hypothetical protein	
70	 63.89 +1    77585..78448    	 -	287	23500986	-	BR0071	-	conserved hypothetical protein	
71	 52.99       78967..81189    	 +	740	23500987	-	BR0072	-	outer membrane protein	
72	 53.73       81398..81946    	 +	182	23500988	-	BR0073	-	conserved hypothetical protein	
73	 58.15       82025..83245    	 -	406	23500989	argG	BR0074	-	argininosuccinate synthase	
74	 57.74       84095..84598    	 -	167	23500990	-	BR0076	-	hypothetical protein	
75	 59.30       84632..85867    	 -	411	23500991	-	BR0077	-	conserved hypothetical protein TIGR00048	
76	 51.04 -1    85811..86002    	 +	63	23500992	-	BR0078	-	hypothetical protein	
77	 55.38       85987..86181    	 +	64	23500993	-	BR0079	-	hypothetical protein	
78	 57.54       86127..86630    	 -	167	23500994	-	BR0080	-	conserved hypothetical protein	
79	 63.28 +1    87070..87453    	 -	127	23500995	-	BR0081	-	conserved hypothetical protein	
80	 54.76       87541..87834    	 -	97	23500996	phhB	BR0082	-	pterin-4-alpha-carbinolamine dehydratase	
81	 55.61       88061..88666    	 +	201	23500997	-	BR0083	-	phosphotyrosine protein phosphatase	
82	 61.25       88576..89166    	 -	196	23500998	-	BR0084	-	conserved hypothetical protein	
83	 56.06       89347..90072    	 -	241	23500999	-	BR0085	-	lipase/acylhydrolase domain protein	
84	 61.73 +1    90219..90947    	 +	242	23501000	-	BR0086	-	ABC transporter, ATP-binding protein	
85	 61.65 +1    90944..93493    	 +	849	23501001	-	BR0087	-	ABC transporter, permease protein	
86	 57.99       93727..94464    	 +	245	23501002	-	BR0088	-	membrane protein, putative	
87	 59.44       94579..95118    	 +	179	23501003	pat	BR0089	-	phosphinothricin N-acetyltransferase	
88	 54.48       95138..95539    	 -	133	23501004	-	BR0090	-	conserved hypothetical protein	
89	 57.01       96089..96823    	 -	244	23501005	-	BR0091	-	conserved hypothetical protein	
90	 56.74       96976..97116    	 -	46	23501006	-	BR0092	-	hypothetical protein	
91	 60.16       97100..99787    	 -	895	23501007	acnA	BR0093	-	aconitate hydratase 1	
92	 58.33      100131..100778   	 +	215	23501008	ccmA	BR0094	-	heme exporter protein CcmA	
93	 62.31 +1   100778..101443   	 +	221	23501009	ccmB	BR0095	-	heme exporter protein CcmB	
94	 58.40      101501..102286   	 +	261	23501010	ccmC	BR0096	-	heme exporter protein CcmC	
95	 56.90      102283..102456   	 +	57	23501011	-	BR0097	-	heme exporter protein D	
96	 59.15      102453..103064   	 +	203	23501012	cycY	BR0098	-	thiol:disulfide interchange protein, thioredoxin family	
97	 61.00      103313..105148   	 -	611	23501013	ilvD	BR0099	-	dihydroxy-acid dehydratase	
98	 54.35      105330..105467   	 +	45	23501014	-	BR0100	-	hypothetical protein	
99	 61.02      105548..105901   	 -	117	23501015	-	BR0101	-	conserved domain protein	
100	 59.52      106006..106383   	 -	125	23501016	-	BR0102	-	response regulator, putative	

 
 56.99 MEAN 
 
 4.33  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.