IslandPath Analysis: Brucella melitensis choromosome II



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.71   STD DEV: 3.41
Brucella melitensis chromosome II, complete sequence - 0..1177787
1139 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 55.71         120..329      	 -	69	17988345	-	BMEII0001	-	hypothetical protein	
2	 55.01         316..1044     	 -	242	17988346	-	BMEII0002	-	RIBOSOMAL-PROTEIN-SERINE ACETYLTRANSFERASE	
3	 61.37 +1     1063..2175     	 -	370	17988347	-	BMEII0003	-	MOLYBDENUM TRANSPORT ATP-BINDING PROTEIN MODC	
4	 59.97        2139..2825     	 -	228	17988348	-	BMEII0004	-	MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB	
5	 56.84        2836..3537     	 -	233	17988349	-	BMEII0005	-	MOLYBDATE-BINDING PERIPLASMIC PROTEIN	
6	 55.07        3631..3837     	 -	68	17988350	-	BMEII0006	-	hypothetical protein	
7	 56.10        3872..4789     	 -	305	17988351	-	BMEII0007	-	Rhodanese-related sulfurtransferases	
8	 60.38        4974..5498     	 +	174	17988352	-	BMEII0008	-	hypothetical protein	
9	 61.26 +1     5612..6295     	 +	227	17988353	-	BMEII0009	-	4-HYDROXY-2-OXOGLUTARATE ALDOLASE / 2-DEHYDRO-3- DEOXYPHOSPHOGLUCONATE ALDOLASE	
10	 64.16 +1     6361..8274     	 -	637	17988354	-	BMEII0010	-	Hypothetical Membrane Associated Protein	
11	 59.56        8615..10105    	 -	496	17988355	-	BMEII0011	-	TRANSCRIPTIONAL REGULATORY PROTEIN HYDG	
12	 57.29       10492..12315    	 +	607	17988356	-	BMEII0012	-	OLIGOENDOPEPTIDASE F	
13	 59.40       12325..13494    	 +	389	17988357	-	BMEII0013	-	PARA-AMINOBENZOATE SYNTHASE COMPONENT I	
14	 59.69       13278..14108    	 +	276	17988358	-	BMEII0014	-	PARA-AMINOBENZOATE SYNTHASE COMPONENT I	
15	 57.74       14220..14981    	 +	253	17988359	-	BMEII0015	-	HOMOSPERMIDINE SYNTHASE	
16	 58.33       14863..15666    	 +	267	17988360	-	BMEII0016	-	HOMOSPERMIDINE SYNTHASE	
17	 60.10       15808..16188    	 +	126	17988361	-	BMEII0017	-	OUTER MEMBRANE LIPOPROTEIN	
18	 58.17       16326..17384    	 +	352	17988362	-	BMEII0018	-	FERROCHELATASE	
19	 58.97       17517..18503    	 +	328	17988363	-	BMEII0019	-	STOMATIN LIKE PROTEIN	
20	 57.48       18524..18991    	 +	155	17988364	-	BMEII0020	-	NODULATION PROTEIN NFED, C-terminal only	
21	 59.54       19082..20161    	 -	359	17988365	-	BMEII0021	-	POLYSIALIC ACID CAPSULE EXPRESSION PROTEIN KPSF	
22	 60.17       20563..21762    	 +	399	17988366	-	BMEII0022	-	hypothetical protein	
23	 56.94       21815..22708    	 -	297	17988367	-	BMEII0023	-	UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE	
24	 59.40       23120..24358    	 +	412	17988368	-	BMEII0024	-	MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE B	
25	 56.62       24862..25578    	 +	238	17988369	-	BMEII0025	-	ATTACHMENT MEDIATING PROTEIN VIRB1 HOMOLOG	
26	 56.60       26014..26331    	 +	105	17988370	-	BMEII0026	-	ATTACHMENT MEDIATING PROTEIN VIRB2 HOMOLOG	
27	 55.27       26345..26695    	 +	116	17988371	-	BMEII0027	-	CHANNEL PROTEIN VIRB3 HOMOLOG	
28	 55.57       26695..29190    	 +	831	17988372	-	BMEII0028	-	ATPASE VIRB4 HOMOLOG	
29	 56.07       29195..29911    	 +	238	17988373	-	BMEII0029	-	ATTACHMENT MEDIATING PROTEIN VIRB5 HOMOLOG	
30	 55.36       30095..31138    	 +	347	17988374	-	BMEII0030	-	CHANNEL PROTEIN VIRB6 HOMOLOG	
31	 58.05       31302..31475    	 +	57	17988375	-	BMEII0031	-	CHANNEL PROTEIN VIRB7 HOMOLOG	
32	 55.69       31478..32197    	 +	239	17988376	-	BMEII0032	-	CHANNEL PROTEIN VIRB8 HOMOLOG	
33	 58.47       32321..33064    	 +	247	17988377	-	BMEII0033	-	CHANNEL PROTEIN VIRB9 HOMOLOG	
34	 57.39       33406..34203    	 +	265	17988378	-	BMEII0034	-	CHANNEL PROTEIN VIRB10 HOMOLOG	
35	 58.66       34187..35272    	 +	361	17988379	-	BMEII0035	-	ATPASE VIRB11 HOMOLOG	
36	 57.61       35418..35936    	 +	172	17988380	-	BMEII0036	-	OUTER MEMBRANE PROTEIN OPRF	
37	 58.02       36376..37347    	 +	323	17988381	-	BMEII0037	-	Hypothetical Cytosolic Protein	
38	 53.15 -1    37467..38960    	 +	497	17988382	-	BMEII0038	-	D-SERINE/D-ALANINE/GLYCINE TRANSPORTER	
39	 60.47       39005..40504    	 -	499	17988383	-	BMEII0039	-	GLUTAMATE SYNTHASE (NADPH) SMALL CHAIN	
40	 60.46       40541..45262    	 -	1573	17988384	-	BMEII0040	-	GLUTAMATE SYNTHASE [NADPH] LARGE CHAIN	
41	 59.81       45935..46984    	 +	349	17988385	-	BMEII0041	-	LOW-SPECIFICITY THREONINE ALDOLASE	
42	 56.05       47122..47592    	 -	156	17988386	-	BMEII0042	-	HEAT SHOCK PROTEIN A	
43	 54.76       47671..47922    	 -	83	17988387	-	BMEII0043	-	hypothetical protein	
44	 53.43 -1    47895..48317    	 -	140	17988388	-	BMEII0044	-	hypothetical protein	
45	 64.84 +2    48282..48554    	 +	90	17988389	-	BMEII0045	-	hypothetical protein	
46	 48.61 -2    48649..48864    	 +	71	17988390	-	BMEII0046	-	hypothetical protein	
47	 61.04       48904..49899    	 +	331	17988391	-	BMEII0047	-	LYSOPHOSPHOLIPASE L2	
48	 60.56       49950..50768    	 -	272	17988392	-	BMEII0048	-	EXTRAGENIC SUPPRESSOR PROTEIN SUHB	
49	 58.14       50879..51769    	 -	296	17988393	-	BMEII0049	-	N-formylglutamate deformylase	
50	 54.27 -1    52088..52450    	 +	120	17988394	-	BMEII0050	-	SENSORY TRANSDUCTION HISTIDINE KINASE	
51	 55.24       52836..53474    	 -	212	17988395	-	BMEII0051	-	NODULATION PROTEIN W	
52	 57.77       53471..54538    	 -	355	17988396	-	BMEII0052	-	SENSORY TRANSDUCTION HISTIDINE KINASE	
53	 59.11       54616..55356    	 -	246	17988397	-	BMEII0053	-	MG(2+) TRANSPORT ATPASE PROTEIN C	
54	 62.18 +1    55334..55489    	 -	51	17988398	-	BMEII0054	-	hypothetical protein	
55	 64.10 +1    55668..56018    	 -	116	17988399	-	BMEII0055	-	hypothetical protein	
56	 59.31       56103..58889    	 -	928	17988400	-	BMEII0056	-	MG(2+) TRANSPORT ATPASE, P-TYPE	
57	 59.57       58938..59219    	 +	93	17988401	-	BMEII0057	-	hypothetical protein	
58	 65.31 +2    59173..59466    	 -	97	17988402	-	BMEII0058	-	hypothetical protein	
59	 61.70 +1    59746..60531    	 -	261	17988403	-	BMEII0059	-	AMINOQUINATE/SHKIMATE DEHYDROGENASE	
60	 61.61 +1    60632..61897    	 -	421	17988404	-	BMEII0060	-	DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX	
61	 62.33 +1    61916..64105    	 -	729	17988405	-	BMEII0061	-	2-OXOISOVALERATE DEHYDROGENASE BETA SUBUNIT	
62	 63.22 +1    64215..64736    	 -	173	17988406	-	BMEII0062	-	PROBABLE CARBONYL REDUCTASE [NADPH]	
63	 58.94       64985..65722    	 -	245	17988407	-	BMEII0063	-	3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE	
64	 61.08       65726..66208    	 -	160	17988408	-	BMEII0064	-	LACTOYLGLUTATHIONE LYASE	
65	 58.72       66260..66976    	 -	238	17988409	-	BMEII0065	-	HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF	
66	 58.86       66976..67731    	 -	251	17988410	-	BMEII0066	-	HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVG	
67	 61.26 +1    67728..68948    	 -	406	17988411	-	BMEII0067	-	HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE PROTEIN LIVM	
68	 57.46       68952..69950    	 -	332	17988412	-	BMEII0068	-	HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE PROTEIN LIVH	
69	 56.62       69992..70678    	 -	228	17988413	-	BMEII0069	-	LEUCINE-, ISOLEUCINE-, VALINE-, THREONINE-, AND ALANINE-BINDING PROTEIN PRECURSOR	
70	 59.12       70700..71242    	 -	180	17988414	-	BMEII0070	-	LEUCINE-, ISOLEUCINE-, VALINE-, THREONINE-, AND ALANINE-BINDING PROTEIN PRECURSOR	
71	 57.44       71453..72265    	 +	270	17988415	-	BMEII0071	-	TRANSCRIPTIONAL REGULATOR, GNTR FAMILY	
72	 61.27 +1    72311..73552    	 -	413	17988416	-	BMEII0072	-	EXTRACYTOPLASMIC FUNCTION ALTERNATIVE SIGMA FACTOR	
73	 51.43 -1    73614..73928    	 +	104	17988417	-	BMEII0073	-	hypothetical protein	
74	 56.41       74255..74800    	 +	181	17988418	-	BMEII0074	-	hypothetical protein	
75	 57.92       74797..75585    	 +	262	17988419	-	BMEII0075	-	NITRATE REDUCTASE	
76	 58.65       75633..77042    	 -	469	17988420	-	BMEII0076	-	ENTEROBACTIN SYNTHETASE COMPONENT F	
77	 60.30       77033..78289    	 +	418	17988421	-	BMEII0077	-	ISOCHORISMATE SYNTHASE DHBC	
78	 60.32       78252..80015    	 +	587	17988422	-	BMEII0078	-	2,3-DIHYDROXYBENZOATE-AMP LIGASE	
79	 60.82       80067..80939    	 +	290	17988423	-	BMEII0079	-	ISOCHORISMATASE	
80	 61.27 +1    80900..81715    	 +	271	17988424	-	BMEII0080	-	2,3-DIHYDRO-2,3-DIHYDROXYBENZOATE DEHYDROGENASE	
81	 63.02 +1    81690..82430    	 +	246	17988425	-	BMEII0081	-	ENTEROBACTIN SYNTHETASE COMPONENT D	
82	 58.13       82402..83010    	 -	202	17988426	-	BMEII0082	-	hypothetical protein	
83	 54.32       83254..83820    	 +	188	17988427	-	BMEII0083	-	BASIC MEMBRANE PROTEIN A PRECURSOR	
84	 57.44       83884..84360    	 +	158	17988428	-	BMEII0084	-	BASIC MEMBRANE PROTEIN A PRECURSOR	
85	 62.40 +1    84363..85934    	 +	523	17988429	-	BMEII0085	-	GALACTOSIDE TRANSPORT ATP-BINDING PROTEIN MGLA	
86	 62.04 +1    85996..87075    	 +	359	17988430	-	BMEII0086	-	GALACTOSIDE TRANSPORT SYSTEM PERMEASE PROTEIN MGLC	
87	 63.16 +1    87072..87983    	 +	303	17988431	-	BMEII0087	-	SUGAR ABC TRANSPORTER, PERMEASE PROTEIN	
88	 56.63       88009..89004    	 +	331	17988432	-	BMEII0088	-	INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE	
89	 61.89 +1    89081..90022    	 -	313	17988433	-	BMEII0089	-	RIBOKINASE	
90	 54.23 -1    90333..90533    	 +	66	17988434	-	BMEII0090	-	hypothetical protein	
91	 53.98 -1    90768..91934    	 -	388	17988435	-	BMEII0091	-	REPLICATION PROTEIN C	
92	 57.75       92332..93318    	 -	328	17988436	-	BMEII0092	-	REPLICATION PROTEIN B	
93	 55.70       93383..94576    	 -	397	17988437	-	BMEII0093	-	REPLICATION PROTEIN A	
94	 51.36 -1    94790..95194    	 +	134	17988438	-	BMEII0094	-	hypothetical protein	
95	 49.33 -2    95161..95385    	 +	74	17988439	-	BMEII0095	-	hypothetical protein	
96	 55.72       95406..96830    	 +	474	17988440	-	BMEII0096	-	OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE	
97	 58.46       97029..99050    	 +	673	17988441	-	BMEII0097	-	CATION-TRANSPORTING P-TYPE ATPASE B	
98	 54.05 -1    99079..99807    	 -	242	17988442	-	BMEII0098	-	HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF	
99	 58.09       99804..100421   	 -	205	17988443	-	BMEII0099	-	HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVG	
100	 55.10      100243..100536   	 -	97	17988444	-	BMEII0100	-	HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVG	

 
 57.71 MEAN 
 
 3.41  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.