IslandPath Analysis: Brucella melitensis choromosome I



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.58   STD DEV: 3.71
Brucella melitensis chromosome I, complete sequence - 0..2117144
2059 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 55.56         192..1217     	 +	341	17986285	-	BMEI0001	-	UROPORPHYRINOGEN DECARBOXYLASE	
2	 53.76 -1     1286..1750     	 +	154	17986286	-	BMEI0002	-	CYTOCHROME FUNCTIONING/ASSEMBLY RELATED PROTEIN	
3	 55.21        2132..3397     	 +	421	17986287	-	BMEI0003	-	TRANSCRIPTION TERMINATION FACTOR RHO	
4	 54.40        3482..3856     	 -	124	17986288	-	BMEI0004	-	Hypothetical Cytosolic Protein	
5	 55.23        3984..5504     	 -	506	17986289	-	BMEI0005	-	THYMIDYLATE KINASE	
6	 52.90 -1     5526..6854     	 +	442	17986290	-	BMEI0006	-	THIOPHENE AND FURAN OXIDATION PROTEIN THDF	
7	 56.15        7015..8991     	 +	658	17986291	-	BMEI0007	-	GLUCOSE INHIBITED DIVISION PROTEIN A	
8	 54.21        8988..9629     	 +	213	17986292	-	BMEI0008	-	GLUCOSE INHIBITED DIVISION PROTEIN B	
9	 54.72        9643..10479    	 +	278	17986293	-	BMEI0009	-	CHROMOSOME PARTITIONING PROTEIN PARA	
10	 56.24       10523..11404    	 +	293	17986294	-	BMEI0010	-	CHROMOSOME PARTITIONING PROTEIN PARB	
11	 59.96       11498..12541    	 -	347	17986295	-	BMEI0011	-	DNA POLYMERASE III, DELTA SUBUNIT	
12	 59.62       12703..13497    	 -	264	17986296	-	BMEI0012	-	ABC TRANSPORTER ATP-BINDING PROTEIN	
13	 58.64       13494..14378    	 -	294	17986297	-	BMEI0013	-	ABC TRANSPORTER INTEGRAL MEMBRANE PROTEIN	
14	 48.39 -2    14633..14818    	 +	61	17986298	-	BMEI0014	-	Hypothetical Protein	
15	 60.53       15022..15966    	 -	314	17986299	-	BMEI0015	-	ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN	
16	 55.71       16050..16259    	 +	69	17986300	-	BMEI0016	-	Hypothetical Protein	
17	 59.53       16256..17278    	 +	340	17986301	-	BMEI0017	-	ALKANAL MONOOXYGENASE ALPHA CHAIN	
18	 58.80       17312..18481    	 -	389	17986302	-	BMEI0018	-	Hypothetical Cytosolic Protein	
19	 58.62       18672..19790    	 +	372	17986303	-	BMEI0019	-	LACI-FAMILY TRANSCRIPTION REGULATOR	
20	 60.08       19769..20770    	 +	333	17986304	-	BMEI0020	-	GLUCOSE-FRUCTOSE OXIDOREDUCTASE PRECURSOR	
21	 58.42       20776..22266    	 +	496	17986305	-	BMEI0021	-	ACETYL-COA:ACETOACETYL-COA TRANSFERASE ALPHA SUBUNIT	
22	 59.41       22268..22639    	 +	123	17986306	-	BMEI0022	-	3-HYDROXYBUTYRYL-COA DEHYDRATASE	
23	 62.77 +1    22584..23045    	 +	153	17986307	-	BMEI0023	-	3-HYDROXYBUTYRYL-COA DEHYDRATASE	
24	 59.83       23039..24559    	 +	506	17986308	-	BMEI0024	-	L-SORBOSONE DEHYDROGENASE, NAD(P) DEPENDENT	
25	 59.12       24572..26056    	 +	494	17986309	-	BMEI0025	-	L-sorbose dehydrogenase (FAD)	
26	 60.58       25915..26817    	 +	300	17986310	-	BMEI0026	-	3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE	
27	 56.56       26783..27148    	 +	121	17986311	-	BMEI0027	-	L-SORBOSE DEHYDROGENASE [FAD]	
28	 58.99       27042..28109    	 +	355	17986312	-	BMEI0028	-	L-SORBOSE DEHYDROGENASE [FAD]	
29	 58.62       28116..28463    	 +	115	17986313	-	BMEI0029	-	L-SORBOSE DEHYDROGENASE [FAD]	
30	 46.09 -2    28520..28864    	 -	114	17986314	-	BMEI0030	-	Hypothetical Cytosolic Protein	
31	 48.74 -2    29014..29331    	 -	105	17986315	-	BMEI0031	-	Hypothetical Cytosolic Protein	
32	 59.22       29555..30319    	 +	254	17986316	-	BMEI0032	-	3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE	
33	 60.67       30518..31351    	 -	277	17986317	-	BMEI0033	-	N-ACYL-L-AMINO ACID AMIDOHYDROLASE	
34	 54.71       31406..31681    	 -	91	17986318	-	BMEI0034	-	N-ACYL-L-AMINO ACID AMIDOHYDROLASE	
35	 60.83       31979..33091    	 +	370	17986319	-	BMEI0035	-	D-ALANYL-D-ALANINE CARBOXYPEPTIDASE	
36	 59.73       33093..34259    	 +	388	17986320	-	BMEI0036	-	COBW PROTEIN	
37	 54.65       34277..34534    	 -	85	17986321	-	BMEI0037	-	Hypothetical Transcriptional Regulatory Protein	
38	 58.58       34513..35724    	 -	403	17986322	-	BMEI0038	-	hypothetical protein	
39	 59.33       35946..36899    	 -	317	17986323	-	BMEI0039	-	ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT ALPHA	
40	 59.35       37038..37967    	 -	309	17986324	-	BMEI0040	-	INTEGRASE/RECOMBINASE XERD	
41	 55.19       37967..38149    	 -	60	17986325	-	BMEI0041	-	Hypothetical Protein	
42	 59.41       38388..38897    	 +	169	17986326	-	BMEI0042	-	SHIKIMATE KINASE	
43	 60.33       38990..40126    	 +	378	17986327	-	BMEI0043	-	3-DEHYDROQUINATE SYNTHASE	
44	 59.33       40190..41497    	 +	435	17986328	-	BMEI0044	-	CBS domain containing protein	
45	 57.93       41522..41830    	 -	102	17986329	-	BMEI0045	-	BOLA PROTEIN	
46	 49.49 -2    41829..42026    	 +	65	17986330	-	BMEI0046	-	Hypothetical Protein	
47	 56.83       42023..42652    	 +	209	17986331	-	BMEI0047	-	Molecular chaperones (DnaJ family)	
48	 63.64 +1    42646..42843    	 +	65	17986332	-	BMEI0048	-	Hypothetical Protein	
49	 58.21       42897..43925    	 +	342	17986333	-	BMEI0049	-	COBS PROTEIN	
50	 61.62 +1    44033..45934    	 +	633	17986334	-	BMEI0050	-	COBT PROTEIN	
51	 41.49 -2    46200..47192    	 -	330	17986335	-	BMEI0051	-	Hypothetical Protein	
52	 45.47 -2    47219..47968    	 -	249	17986336	-	BMEI0052	-	Hypothetical Protein	
53	 60.81       48375..50816    	 -	813	17986337	-	BMEI0053	-	CATION-TRANSPORTING ATPASE PACS	
54	 58.87       50893..51315    	 +	140	17986338	-	BMEI0054	-	MERCURIC RESISTANCE OPERON REGULATORY PROTEIN	
55	 54.77       51427..52149    	 -	240	17986339	-	BMEI0055	-	Hypothetical Protein	
56	 59.52       52604..52897    	 +	97	17986340	-	BMEI0056	-	LSU ribosomal protein L28P	
57	 58.48       52977..53648    	 +	223	17986341	-	BMEI0057	-	Hypothetical Membrane Spanning Protein	
58	 51.03 -1    53789..57913    	 -	1374	17986342	-	BMEI0058	-	EXTRACELLULAR SERINE PROTEASE	
59	 40.56 -2    58718..58966    	 -	82	17986343	-	BMEI0059	-	Hypothetical Protein	
60	 42.89 -2    59103..60305    	 +	400	17986344	-	BMEI0060	-	Hypothetical Protein	
61	 42.22 -2    60314..60673    	 +	119	17986345	-	BMEI0061	-	hypothetical protein	
62	 42.69 -2    61107..62186    	 +	359	17986346	-	BMEI0062	-	hypothetical protein	
63	 48.04 -2    62656..63702    	 +	348	17986347	-	BMEI0063	-	Hypothetical Membrane Spanning Protein	
64	 44.67 -2    63731..64030    	 -	99	17986348	-	BMEI0064	-	Hypothetical Protein	
65	 61.17       64091..64636    	 -	181	17986349	-	BMEI0065	-	Hypothetical Cytosolic Protein	
66	 55.99       64844..65527    	 +	227	17986350	-	BMEI0066	-	TWO COMPONENT RESPONSE REGULATOR	
67	 61.90 +1    65562..66023    	 +	153	17986351	-	BMEI0067	-	CAMP-DEPENDENT PROTEIN KINASE REGULATORY SUBUNIT	
68	 57.24       66029..66898    	 -	289	17986352	-	BMEI0068	-	EXODEOXYRIBONUCLEASE III	
69	 55.72       66938..67540    	 -	200	17986353	-	BMEI0069	-	OUTER MEMBRANE LIPOPROTEINS CARRIER PROTEIN PRECURSOR	
70	 58.52       68014..68700    	 -	228	17986354	-	BMEI0070	-	AQUAPORIN	
71	 54.58       69178..69450    	 +	90	17986355	-	BMEI0071	-	Hypothetical Protein	
72	 60.15       69759..70418    	 +	219	17986356	-	BMEI0072	-	CELL DIVISION ATP-BINDING PROTEIN FTSE	
73	 60.88       70411..71412    	 +	333	17986357	-	BMEI0073	-	CELL DIVISION PROTEIN FTSX	
74	 55.78       71559..72311    	 +	250	17986358	-	BMEI0074	-	Hypothetical Protein	
75	 57.36       72370..73272    	 +	300	17986359	-	BMEI0075	-	1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE	
76	 55.18       73425..73955    	 +	176	17986360	-	BMEI0076	-	INORGANIC PYROPHOSPHATASE	
77	 57.77       74749..75321    	 -	190	17986361	-	BMEI0077	-	CATION TRANSPORT PROTEIN CHAC	
78	 57.65       75521..76540    	 +	339	17986362	-	BMEI0078	-	Hypothetical Protein	
79	 60.46       76509..77474    	 -	321	17986363	-	BMEI0079	-	AROGENATE DEHYDROGENASE / PREPHENATE DEHYDROGENASE	
80	 59.08       77479..78585    	 -	368	17986364	-	BMEI0080	-	HISTIDINOL-PHOSPHATE AMINOTRANSFERASE	
81	 61.92 +1    78582..79508    	 -	308	17986365	-	BMEI0081	-	METHYLTRANSFERASE	
82	 55.68       79657..80193    	 +	178	17986366	-	BMEI0082	-	HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE	
83	 61.01       80233..82635    	 -	800	17986367	-	BMEI0083	-	Hypothetical Protein	
84	 61.14       82965..84230    	 -	421	17986368	-	BMEI0084	-	DIAMINOPIMELATE DECARBOXYLASE	
85	 54.58       84258..84530    	 -	90	17986369	-	BMEI0085	-	Hypothetical Protein	
86	 59.53       84551..85951    	 -	466	17986370	-	BMEI0086	-	ARGININOSUCCINATE LYASE	
87	 58.55       86266..86721    	 +	151	17986371	-	BMEI0087	-	THIOL:DISULFIDE INTERCHANGE PROTEIN TLPA	
88	 60.91       86729..87214    	 -	161	17986372	-	BMEI0088	-	EMG2 protein	
89	 56.68       87232..88092    	 -	286	17986373	-	BMEI0089	-	RIBONUCLEASE BN	
90	 59.93       88202..89092    	 +	296	17986374	-	BMEI0090	-	SHORT-CHAIN DEHYDROGENASE	
91	 51.11 -1    89191..89325    	 +	44	17986375	-	BMEI0091	-	Hypothetical Protein	
92	 60.42       89285..89956    	 +	223	17986376	-	BMEI0092	-	ADENOSYLCOBALAMIN-DEPENDENT DIOL DEHYDRATASE GAMMA SUBUNIT	
93	 58.74       90052..90783    	 -	243	17986377	-	BMEI0093	-	EXSD PROTEIN	
94	 55.48       90725..91171    	 -	148	17986378	-	BMEI0094	-	VACUOLAR ATP SYNTHASE 16 KD PROTEOLIPID SUBUNIT	
95	 59.51       91171..91869    	 -	232	17986379	-	BMEI0095	-	SUCCINOGLYCAN BIOSYNTHESIS REGULATOR	
96	 58.23       92205..92951    	 +	248	17986380	-	BMEI0096	-	ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT	
97	 60.36       92987..94033    	 +	348	17986381	-	BMEI0097	-	ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT	
98	 50.90 -1    94144..94365    	 +	73	17986382	-	BMEI0098	-	Hypothetical Protein	
99	 57.31       94517..95392    	 +	291	17986383	-	BMEI0099	-	3-HYDROXYBUTYRYL-COA DEHYDROGENASE	
100	 50.60 -1    95552..95800    	 +	82	17986384	-	BMEI0100	-	Hypothetical Protein	

 
 57.58 MEAN 
 
 3.71  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.