IslandPathversion 1.0

IslandPath Analysis: Bradyrhizobium japonicum



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.12 STD DEV: 3.75
Bradyrhizobium japonicum, complete genome - 0..9105828
8317 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 54.74 -2      102..428      	 +	108	27375112	-	blr0001	-	blr0001	
2	 57.59 -1      484..1023     	 +	179	27375113	-	blr0002	-	blr0002	
3	 60.27 -1     3089..3682     	 +	197	27375114	-	blr0003	-	blr0003	
4	 63.40        4239..4391     	 +	50	27375115	-	bsr0004	-	bsr0004	
5	 57.41 -1     4427..4750     	 -	107	27375116	-	bll0005	-	bll0005	
6	 62.14        4972..6054     	 -	360	27375117	nrdB	bll0006	F	ribonucleoside-diphosphate reductase beta subunit	
7	 64.00        6036..8207     	 -	723	27375118	-	bll0007	F	bll0007	
8	 60.52        8380..8688     	 -	102	27375119	-	bll0008	-	bll0008	
9	 57.10 -1     8962..9714     	 -	250	27375120	-	bll0009	K	bll0009	
10	 53.13 -2    10345..10743    	 -	132	27375121	-	bll0010	-	bll0010	
11	 65.38       10872..11492    	 -	206	27375122	-	bll0011	-	bll0011	
12	 60.97       11482..11955    	 +	157	27375123	-	blr0012	-	blr0012	
13	 61.80       12282..12815    	 +	177	27375124	-	blr0013	-	blr0013	
14	 65.62       13421..13804    	 -	127	27375125	-	bll0014	-	bll0014	
15	 64.36       13680..14069    	 -	129	27375126	-	bll0015	L	bll0015	
16	 64.77       14066..14329    	 -	87	27375127	-	bsl0016	L	bsl0016	
17	 57.78 -1    14685..15044    	 +	119	27375128	-	blr0017	L	blr0017	
18	 61.71       15041..15868    	 +	275	27375129	-	blr0018	L	blr0018	
19	 58.48 -1    16189..16518    	 +	109	27375130	-	blr0019	-	blr0019	
20	 61.15       17139..18371    	 -	410	27375131	-	bll0020	Q	bll0020	
21	 60.12 -1    18497..20497    	 -	666	27375132	-	bll0021	-	bll0021	
22	 65.29       21525..21815    	 +	96	27375133	-	bsr0022	-	bsr0022	
23	 58.47 -1    21972..23081    	 +	369	27375134	-	blr0023	L	blr0023	
24	 64.02       23634..24011    	 +	125	27375135	-	blr0024	-	blr0024	
25	 55.14 -2    24726..26486    	 -	586	27375136	-	bll0025	S	bll0025	
26	 60.08 -1    26532..27290    	 -	252	27375137	-	bll0026	I	bll0026	
27	 56.32 -2    27698..27958    	 +	86	27375138	-	bsr0027	-	bsr0027	
28	 54.45 -2    28473..29315    	 +	280	27375139	-	blr0028	Q	blr0028	
29	 54.86 -2    29412..29699    	 +	95	27375140	-	bsr0029	-	bsr0029	
30	 55.28 -2    29792..31372    	 +	526	27375141	-	blr0030	L	recombinase	
31	 59.52 -1    31338..31715    	 -	125	27375142	-	bll0031	-	bll0031	
32	 63.44       31759..31944    	 -	61	27375143	-	bsl0032	-	bsl0032	
33	 62.39       32239..32472    	 +	77	27375144	-	bsr0033	G	bsr0033	
34	 63.38       32885..33310    	 +	141	27375145	-	blr0034	L	blr0034	
35	 60.22 -1    33307..33663    	 +	118	27375146	-	blr0035	L	blr0035	
36	 52.63 -2    33782..33952    	 +	56	27375147	-	bsr0036	E	bsr0036	
37	 55.18 -2    33965..34321    	 +	118	27375148	-	blr0037	E	blr0037	
38	 54.96 -2    34579..34860    	 +	93	27375149	-	bsr0038	K	bsr0038	
39	 62.08       35259..35498    	 +	79	27375150	-	bsr0039	-	bsr0039	
40	 59.26 -1    35827..36150    	 -	107	27375151	-	bll0040	S	bll0040	
41	 56.32 -2    36259..36432    	 -	57	27375152	-	bsl0041	-	bsl0041	
42	 61.45       36857..37297    	 -	146	27375153	-	bll0042	-	bll0042	
43	 63.61       37305..39332    	 -	675	27375154	traG	bll0043	U	conjugal transfer protein	
44	 66.56       39329..41203    	 -	624	27375155	-	bll0044	U	bll0044	
45	 66.34       41537..42445    	 -	302	27375156	-	bll0045	M	bll0045	
46	 64.88       42450..42785    	 -	111	27375157	-	bll0046	-	bll0046	
47	 66.48       42820..43365    	 -	181	27375158	traF	bll0047	O	conjugal transfer protein precursor	
48	 66.09       43362..43880    	 -	172	27375159	-	bll0048	-	bll0048	
49	 65.54       43867..44133    	 -	88	27375160	-	bsl0049	-	bsl0049	
50	 68.39 +1    44130..44768    	 -	212	27375161	-	bll0050	D	bll0050	
51	 62.52       44765..46042    	 -	425	27375162	repA	bll0051	-	replication protein A	
52	 65.86       45894..46265    	 -	123	27375163	-	bll0052	-	bll0052	
53	 65.80       46349..47044    	 -	231	27375164	-	bll0053	S	bll0053	
54	 59.85 -1    47255..47518    	 -	87	27375165	-	bsl0054	-	bsl0054	
55	 58.33 -1    47732..47983    	 +	83	27375166	-	bsr0055	K	bsr0055	
56	 59.85 -1    48147..48557    	 +	136	27375167	-	blr0056	-	blr0056	
57	 63.09       48674..49036    	 -	120	27375168	-	bll0057	-	bll0057	
58	 56.43 -2    49708..50049    	 +	113	27375169	-	blr0058	-	blr0058	
59	 53.42 -2    50081..50314    	 -	77	27375170	cspA	bsl0059	K	cold shock protein	
60	 58.66 -1    50722..51495    	 +	257	27375171	-	blr0060	Q	blr0060	
61	 64.00       51544..52068    	 -	174	27375172	-	bll0061	-	bll0061	
62	 53.36 -2    52262..52930    	 +	222	27375173	atc1	blr0062	-	Atc1 protein	
63	 63.12       53006..53935    	 -	309	27375174	-	bll0063	-	bll0063	
64	 64.97       54262..55320    	 -	352	27375175	-	bll0064	-	bll0064	
65	 65.17       55377..57515    	 -	712	27375176	-	bll0065	K	bll0065	
66	 63.53       57643..58884    	 -	413	27375177	-	bll0066	-	bll0066	
67	 55.56 -2    59742..59957    	 +	71	27375178	-	bsr0067	-	bsr0067	
68	 59.84 -1    60225..61631    	 -	468	27375179	-	bll0068	L	exonuclease I	
69	 60.15 -1    61639..62160    	 -	173	27375180	-	bll0069	E	bll0069	
70	 61.11       62157..62552    	 -	131	27375181	-	bll0070	K	bll0070	
71	 64.41       62687..62908    	 +	73	27375182	-	bsr0071	-	bsr0071	
72	 65.15       62984..64234    	 +	416	27375183	-	blr0072	-	blr0072	
73	 62.72       64235..64690    	 +	151	27375184	-	blr0073	-	blr0073	
74	 61.65       64674..65810    	 +	378	27375185	-	blr0074	-	blr0074	
75	 48.47 -2    66173..66727    	 -	184	27375186	-	bll0075	-	bll0075	
76	 53.37 -2    66843..68654    	 -	603	27375187	-	bll0076	-	bll0076	
77	 54.60 -2    68941..70365    	 +	474	27375188	-	blr0077	F	blr0077	
78	 59.88 -1    70615..70776    	 +	53	27375189	-	bsr0078	L	bsr0078	
79	 58.60 -1    70897..71925    	 -	342	27375190	-	bll0079	-	bll0079	
80	 60.79       72470..74734    	 +	754	27375191	-	blr0080	E	blr0080	
81	 66.44       74948..75823    	 -	291	27375192	-	bll0081	-	bll0081	
82	 69.16 +1    75915..76235    	 -	106	27375193	-	bll0082	-	bll0082	
83	 67.38       76401..76964    	 -	187	27375194	-	bll0083	-	bll0083	
84	 65.30       77065..78453    	 +	462	27375195	-	blr0084	M	blr0084	
85	 69.22 +1    78511..79803    	 -	430	27375196	-	bll0085	K	bll0085	
86	 64.46       79931..80338    	 -	135	27375197	-	bll0086	S	bll0086	
87	 64.21       80457..81149    	 -	230	27375198	-	bll0087	-	bll0087	
88	 65.15       81149..82138    	 -	329	27375199	-	bll0088	C	oxidoreductase	
89	 64.59       82138..82956    	 -	272	27375200	-	bll0089	P	ABC transporter permease protein	
90	 68.01 +1    82953..83768    	 -	271	27375201	-	bll0090	P	ABC transporter ATP-binding protein	
91	 60.51       83779..84801    	 -	340	27375202	-	bll0091	P	ABC transporter substrate-binding protein	
92	 66.67       84955..85761    	 +	268	27375203	-	blr0092	R	blr0092	
93	 65.94       85889..86164    	 +	91	27375204	-	bsr0093	-	bsr0093	
94	 63.22       86228..87328    	 +	366	27375205	-	blr0094	-	blr0094	
95	 64.99       87667..89694    	 +	675	27375206	-	blr0095	-	blr0095	
96	 69.51 +1    89896..91971    	 -	691	27375207	-	bll0096	N	bll0096	
97	 67.36       92215..93513    	 +	432	27375208	-	blr0097	R	blr0097	
98	 63.33       93761..94000    	 -	79	27375209	-	bsl0098	-	bsl0098	
99	 65.50       94103..95728    	 -	541	27375210	glt	bll0099	E	glt	
100	 61.99       96219..97073    	 -	284	27375211	-	bll0100	C	ferredoxin NADP+ reductase	

 
 64.12 MEAN 
 
 3.75  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.