IslandPath Analysis: Bifidobacterium longum



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.23   STD DEV: 4.38
Bifidobacterium longum NCC2705, complete genome - 0..2256646
1729 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 56.67          49..288      	 +	79	23464629	cspA	BL0001	-	cold shock protein	
2	 63.84         526..2151     	 +	541	23464630	groEL	BL0002	-	chaperone	
3	 60.82        2248..2538     	 -	96	23464631	-	BL0003	-	hypothetical protein	
4	 53.16 -1     2613..3419     	 +	268	23464632	-	BL0004	-	hypothetical protein	
5	 58.06        3412..4143     	 +	243	23464633	-	BL0005	-	response regulator of two-component system	
6	 59.81        4315..6165     	 +	616	23464634	-	BL0006	-	histidine kinase sensor of two-component system	
7	 62.05        6235..6624     	 +	129	23464635	cspB	BL0007	-	cold shock protein	
8	 59.51        6633..7820     	 +	395	23464636	-	BL0008	-	narrowly conserved hypothetical protein	
9	 63.56        7932..8897     	 -	321	23464637	-	BL0009	-	conserved hypothetical protein	
10	 62.72        9047..11656    	 +	869	23464638	clpC	BL0010	-	protease	
11	 57.50       11836..13155    	 -	439	23464639	codA	BL0011	-	cytosine deaminase	
12	 57.35       13298..14800    	 +	500	23464640	-	BL0012	-	hypothetical protein weakly similar to putative transcriptional regulator from Streptomyces	
13	 59.84       14990..16366    	 +	458	23464641	proP	BL0013	-	proline/betaine transporter	
14	 61.79       16452..17210    	 +	252	23464642	-	BL0014	-	creatinine amidohydrolase; creatininase	
15	 59.92       17382..19175    	 +	597	23464643	-	BL0015	-	5'-nucleotidase family protein	
16	 64.54       19381..20841    	 -	486	23464644	-	BL0016	-	narrowly conserved hypothetical protein	
17	 63.10       20941..22341    	 +	466	23464645	hisS	BL0017	-	histidyl-tRNA synthetase	
18	 63.61       22377..24176    	 +	599	23464646	aspS	BL0018	-	aspartyl-tRNA synthetase	
19	 52.57 -1    24634..25740    	 -	368	23464647	-	BL0019	-	narrowly conserved hypothetical protein	
20	 57.22       25746..26105    	 +	119	23464648	-	BL0020	-	hypothetical protein	
21	 61.76       26169..26984    	 +	271	23464649	gluA	BL0021	-	ATP-binding protein of ABC transporter for glutamate	
22	 61.92       27055..27855    	 +	266	23464650	gluB	BL0022	-	glutamate-binding protein of ABC transporter system	
23	 60.18       27855..28532    	 +	225	23464651	gluC	BL0023	-	permease protein of ABC transporter for glutamate	
24	 64.76 +1    28538..29638    	 +	366	23464652	gluD	BL0024	-	permease protein of ABC transporter for glutamate	
25	 61.87       29727..31268    	 +	513	23464653	-	BL0025	-	hypothetical secreted protein with probable acid phosphatase domain	
26	 50.78 -2    31813..32133    	 +	106	23464654	-	BL0026	-	hypothetical protein	
27	 59.01       32346..33272    	 +	308	23464655	-	BL0027	-	narrowly conserved hypothetical protein	
28	 60.98       33406..35973    	 +	855	23464656	-	BL0028	-	probable DEAD box-like helicase	
29	 61.96       36056..37435    	 +	459	23464657	-	BL0029	-	widely conserved hypothetical protein with possible helicase and ATP binding domains	
30	 58.78       37493..38215    	 +	240	23464658	-	BL0030	-	response regulator of two-component system	
31	 57.13       38212..39909    	 +	565	23464659	-	BL0031	-	histidine kinase sensor of two-component system	
32	 58.12       39906..41636    	 +	576	23464660	-	BL0032	-	hypothetical protein	
33	 58.64       41952..42935    	 +	327	23464661	-	BL0033	-	probable solute binding protein of ABC transporter system possibly for sugars	
34	 57.20       43076..44617    	 +	513	23464662	-	BL0034	-	ATP binding protein of ABC transporter	
35	 57.42       44619..45689    	 +	356	23464663	-	BL0035	-	probable ABC transport system permease protein for sugars	
36	 58.85       45686..46708    	 +	340	23464664	-	BL0036	-	probable ABC transporter permease protein for sugars	
37	 58.57       46931..48388    	 -	485	23464665	-	BL0037	-	probable efflux-type transporter	
38	 59.98       48777..49673    	 +	298	23464666	-	BL0038	-	conserved protein with hydroxyacid dehydrogenase catalytic domain	
39	 56.40       49777..50292    	 +	171	23464667	-	BL0039	-	hypothetical protein	
40	 64.82 +1    50643..51293    	 -	216	23464668	-	BL0040	-	narrowly conserved hypothetical protein	
41	 57.38       51370..51735    	 +	121	23464669	-	BL0041	-	conserved hypothetical protein	
42	 57.68       51834..52178    	 -	114	23464670	-	BL0042	-	narrowly conserved hypothetical protein in upf 0044	
43	 62.72       52211..54643    	 -	810	23464671	-	BL0043	-	possible fused ATP binding protein and permease of ABC transporter	
44	 60.40       54774..55427    	 -	217	23464672	-	BL0044	-	narrowly conserved hypothetical protein	
45	 60.40       55688..56692    	 +	334	23464673	-	BL0045	-	probable glycosyltransferase	
46	 59.80       56734..57519    	 -	261	23464674	-	BL0046	-	narrowly conserved hypothetical protein	
47	 60.42       57764..58531    	 +	255	23464675	ppgK	BL0047	-	similar to Mycobacterium tuberculosis polyphosphate glucokinase (polyphosphate-glucose phosphotransferase) also similar to members of ROK family of transcriptional regulators	
48	 60.79       58756..60015    	 +	419	23464676	-	BL0048	-	probable aminotransferase	
49	 58.91       60024..60848    	 +	274	23464677	-	BL0049	-	ATP binding protein of ABC transporter	
50	 61.49       60835..63132    	 -	765	23464678	-	BL0050	-	hypothetical protein	
51	 61.60       63263..66817    	 +	1184	23464679	-	BL0051	-	hypothetical protein	
52	 63.77       66882..69644    	 +	920	23464680	ligA	BL0052	-	DNA ligase	
53	 64.96 +1    69820..70935    	 +	371	23464681	mrp	BL0053	-	hypothetical protein with duf059 and 4Fe-4S iron sulfur cluster binding domain	
54	 53.64 -1    71209..72129    	 -	306	23464682	-	BL0054	-	hypothetical protein	
55	 60.42       72657..73472    	 +	271	23464683	-	BL0055	-	sugar permease of ABC transporter system	
56	 60.67       73583..75718    	 +	711	23464684	-	BL0056	-	possible beta-hexosaminidase A	
57	 63.23       76721..77680    	 +	319	23464685	-	BL0058	-	possible butyryl-CoA dehydrogenase	
58	 65.68 +1    77859..78968    	 +	369	23464686	-	BL0059	-	narrowly conserved hypothetical protein	
59	 59.76       79020..79265    	 +	81	23464687	-	BL0060	-	hypothetical protein with limited similarity to C-terminal part of trans-aconitate methyltransferase	
60	 56.57       79335..80225    	 -	296	23464688	-	BL0061	-	possible TetR-type transcriptional regulator	
61	 58.38       80336..80878    	 +	180	23464689	-	BL0062	-	protein similar to YcbI of B. subtilis	
62	 62.67       80905..81705    	 -	266	23464690	-	BL0063	-	hypothetical transmembrane protein with unknown function	
63	 67.68 +1    81702..82490    	 -	262	23464691	-	BL0064	-	ATP binding protein of ABC transporter	
64	 60.85       82595..83161    	 +	188	23464692	efp	BL0065	-	elongation factor P	
65	 61.26       83216..83788    	 +	190	23464693	nusB	BL0066	-	NusB antitermination protein	
66	 62.75       83979..85202    	 +	407	23464694	carA	BL0067	-	carbamoyl-phosphate synthase small chain	
67	 64.30       85204..88587    	 +	1127	23464695	carB	BL0068	-	carbamoyl-phosphate synthase large chain	
68	 60.80       88587..89507    	 +	306	23464696	-	BL0069	-	similar to orotidine 5'-phosphate decarboxylase	
69	 63.79       89687..90277    	 +	196	23464697	-	BL0070	-	guanylate kinase	
70	 60.88       90279..90986    	 -	235	23464698	dnaQ	BL0071	-	possible exonuclease	
71	 62.19       91133..93388    	 +	751	23464699	tetQ	BL0072	-	tetracycline resistance protein TetQ	
72	 59.50       93397..93954    	 -	185	23464700	-	BL0073	-	possible phospholipase/carboxylesterase	
73	 55.82 -1    94189..94935    	 +	248	23464701	-	BL0074	-	permease protein of ABC transporter system	
74	 58.07       94922..95596    	 +	224	23464702	-	BL0075	-	permease of ABC transporter system for amino acids	
75	 59.60       95589..96380    	 +	263	23464703	gltL	BL0076	-	ATP binding protein of ABC transporter for glutamate/aspartate	
76	 60.02       96446..97348    	 +	300	23464704	-	BL0077	-	probable solute-binding protein for glutamate/aspartate ABC transporter system	
77	 60.21       97584..98822    	 +	412	23464705	metC	BL0078	-	cystathionine beta-lyase	
78	 59.92       99066..99317    	 +	83	23464706	-	BL0079	-	hypothetical protein with homology to glutaredoxin-like protein	
79	 57.45      100832..101200   	 -	122	23464707	-	BL0081	-	conserved hypothetical protein in upf0074	
80	 49.53 -2   101281..101811   	 -	176	23464708	-	BL0082	-	hypothetical protein	
81	 66.30 +1   101827..102096   	 +	89	23464709	-	BL0083	-	hypothetical protein	
82	 59.67      102256..103155   	 +	299	23464710	-	BL0084	-	narrowly conserved hypothetical protein	
83	 58.97      103222..104052   	 -	276	23464711	-	BL0085	-	conserved hypothetical protein	
84	 59.25      104196..104990   	 -	264	23464712	murI	BL0086	-	glutamate racemase	
85	 61.57      105149..105991   	 +	280	23464713	dapF	BL0087	-	diaminopimelate epimerase	
86	 61.25      105997..106734   	 -	245	23464714	-	BL0088	-	narrowly conserved hypothetical transmembrane protein	
87	 59.51      106872..107765   	 +	297	23464715	-	BL0089	-	conserved hypothetical protein with phosphoesterase domain	
88	 59.34      107920..108192   	 -	90	23464716	-	BL0090	-	hypothetical protein	
89	 62.32      108199..109854   	 -	551	23464717	-	BL0091	-	hypothetical protein	
90	 61.46      110000..111574   	 +	524	23464718	-	BL0092	-	probable DNA helicase II	
91	 62.83      111644..113389   	 -	581	23464719	-	BL0093	-	narrowly conserved hypothetical protein	
92	 61.90      113610..114491   	 +	293	23464720	-	BL0094	-	hypothetical protein	
93	 62.83      114607..115023   	 +	138	23464721	-	BL0095	-	narrowly conserved hypothetical protein	
94	 60.33      115492..117195   	 +	567	23464722	-	BL0096	-	hypothetical protein	
95	 62.05      117192..118382   	 +	396	23464723	ispC	BL0097	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase	
96	 63.70      118391..119602   	 +	403	23464724	ispG	BL0098	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1	
97	 58.91      119657..121435   	 +	592	23464725	-	BL0099	-	hypothetical protein with possible acylase domain	
98	 59.72      121485..122204   	 +	239	23464726	-	BL0100	-	conserved hypothetical protein	
99	 59.12      122201..122995   	 +	264	23464727	uppS	BL0101	-	undecaprenyl pyrophosphate synthetase	
100	 56.36      123151..124353   	 -	400	23464728	-	BL0102	-	possible inosine-uridine preferring nucleoside hydrolase	

 
 60.23 MEAN 
 
 4.38  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.