IslandPath Analysis: Bacillus halodurans C125



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.65   STD DEV: 3.70
Bacillus halodurans, complete genome - 0..4202353
4066 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 42.22         584..1933     	 +	449	15612564	dnaA	BH0001	L	initiation of chromosome replication	
2	 39.46 -1     2103..3245     	 +	380	15612565	dnaN	BH0002	L	DNA polymerase III (beta subunit)	
3	 46.40        3429..3650     	 +	73	15612566	BH0003	BH0003	S	BH0003~unknown conserved protein	
4	 44.44        3662..4777     	 +	371	15612567	recF	BH0004	L	DNA repair and genetic recombination	
5	 41.11        4788..5057     	 +	89	15612568	BH0005	BH0005	-	BH0005~unknown conserved protein	
6	 46.19        5130..7043     	 +	637	15612569	gyrB	BH0006	L	DNA gyrase subunit B	
7	 45.28        7065..9566     	 +	833	15612570	gyrA	BH0007	L	DNA gyrase subunit A	
8	 42.20        9763..10845    	 +	360	15612571	BH0008	BH0008	T	BH0008~unknown conserved protein in others	
9	 38.04 -1    10970..11776    	 -	268	15612572	BH0009	BH0009	-	BH0009~unknown	
10	 43.57       12114..12533    	 +	139	15612573	BH0010	BH0010	-	BH0010~unknown	
11	 40.27       12526..12972    	 +	148	15612574	BH0011	BH0011	-	BH0011~unknown	
12	 42.94       13208..14737    	 +	509	15612575	BH0012	BH0012	-	BH0012~unknown	
13	 44.62       14738..15490    	 +	250	15612576	BH0013	BH0013	-	BH0013~unknown	
14	 44.44       15625..17118    	 +	497	15612577	BH0014	BH0014	-	BH0014~unknown	
15	 45.70       17131..17316    	 +	61	15612578	BH0015	BH0015	-	BH0015~unknown	
16	 44.64       17321..18169    	 +	282	15612579	BH0016	BH0016	-	BH0016~unknown	
17	 44.82       18166..21030    	 +	954	15612580	BH0017	BH0017	R	BH0017~unknown	
18	 46.46       21088..22161    	 +	357	15612581	BH0018	BH0018	-	BH0018~unknown	
19	 39.94 -1    28792..29745    	 -	317	15612582	BH0019	BH0019	-	BH0019~unknown conserved protein in B. subtilis	
20	 43.48       29875..31332    	 +	485	15612583	guaB	BH0020	R	inositol-monophosphate dehydrogenase	
21	 45.02       31440..32774    	 +	444	15612584	dacA	BH0021	M	serine-type D-Ala-D-Ala carboxypeptidase	
22	 46.93       32914..33810    	 +	298	15612585	BH0022	BH0022	H	superoxide-inducible protein	
23	 47.72 +1    33818..34408    	 +	196	15612586	BH0023	BH0023	H	amidotransferase	
24	 46.71       34678..35955    	 +	425	15612587	serS	BH0024	J	seryl-tRNA synthetase	
25	 47.07       36376..37278    	 -	300	15612588	BH0025	BH0025	C	acetamidase	
26	 46.68       37372..39297    	 -	641	15612589	BH0026	BH0026	F	nucleotidase precursor	
27	 46.80       39462..40478    	 -	338	15612590	BH0027	BH0027	E	oligopeptide ABC transporter (ATP-binding protein)	
28	 45.40       40459..41502    	 -	347	15612591	BH0028	BH0028	E	oligopeptide ABC transporter (ATP-binding protein)	
29	 46.03       41561..42505    	 -	314	15612592	BH0029	BH0029	E	oligopeptide ABC transporter (permease)	
30	 46.25       42524..43429    	 -	301	15612593	BH0030	BH0030	E	oligopeptide ABC transporter (permease)	
31	 44.34       43756..45372    	 +	538	15612594	BH0031	BH0031	E	oligopeptide ABC transporter (oligopeptide-binding protein)	
32	 38.64 -1    45754..45885    	 +	43	15612595	BH0032	BH0032	-	BH0032~unknown	
33	 48.96 +1    45912..46391    	 +	159	15612596	BH0033	BH0033	F	Cu binding protein (Mn oxidation)	
34	 46.14       46908..48602    	 +	564	15612597	dnaX	BH0034	L	DNA polymerase III gamma and tau subunits	
35	 42.63       48620..48931    	 +	103	15612598	BH0035	BH0035	S	BH0035~unknown conserved protein	
36	 46.23       48944..49540    	 +	198	15612599	recR	BH0036	L	DNA repair and genetic recombination	
37	 38.43 -1    49555..49770    	 +	71	15612600	BH0037	BH0037	-	BH0037~unknown conserved protein in B. subtilis	
38	 45.65       49847..50122    	 +	91	15612601	bofA	BH0038	-	inhibitor of the pro-sigma K processing machinery	
39	 47.97 +1    56938..58194    	 +	418	15612602	BH0039	BH0039	L	transposase (11)	
40	 41.29       58781..58981    	 +	66	15612603	csfB	BH0040	-	sigma-F transcribed protein	
41	 47.34       59286..60734    	 +	482	15612604	BH0041	BH0041	E	lysine decarboxylase	
42	 45.81       60731..61363    	 +	210	15612605	tmk	BH0042	F	thymidylate kinase	
43	 42.73       61382..61711    	 +	109	15612606	BH0043	BH0043	S	BH0043~unknown conserved protein	
44	 45.19       61728..62714    	 +	328	15612607	holB	BH0044	L	DNA polymerase III delta' subunit	
45	 44.44       62719..63546    	 +	275	15612608	BH0045	BH0045	S	signal peptidase-like protein	
46	 42.17       63562..63912    	 +	116	15612609	BH0046	BH0046	-	BH0046~unknown conserved protein in B. subtilis	
47	 44.94       63977..64717    	 +	246	15612610	BH0047	BH0047	Q	BH0047~unknown conserved protein	
48	 44.91       64714..64998    	 +	94	15612611	BH0048	BH0048	L	BH0048~unknown conserved protein	
49	 47.70 +1    64967..65836    	 +	289	15612612	BH0049	BH0049	R	BH0049~unknown conserved protein	
50	 37.80 -1    65879..66169    	 -	96	15612613	abrB	BH0050	K	transcriptional pleiotropic regulator of transition state genes	
51	 43.50       66365..67318    	 +	317	15612614	BH0051	BH0051	-	BH0051~unknown	
52	 47.79 +1    67343..69175    	 +	610	15612615	BH0052	BH0052	R	BH0052~unknown	
53	 44.38       69594..71576    	 +	660	15612616	metS	BH0053	R	methionyl-tRNA synthetase	
54	 46.55       71741..72451    	 +	236	15612617	BH0054	BH0054	L	BH0054~unknown conserved protein	
55	 44.76       72723..73973    	 +	416	15612618	BH0055	BH0055	S	BH0055~unknown conserved protein	
56	 48.21 +1    74135..74692    	 +	185	15612619	BH0056	BH0056	L	BH0056~unknown conserved protein	
57	 46.32       74689..75558    	 +	289	15612620	ksgA	BH0057	J	dimethyladenosine transferase	
58	 43.61       75613..76488    	 +	291	15612621	BH0058	BH0058	-	BH0058~unknown conserved protein in B. subtilis	
59	 44.19       76895..77161    	 +	88	15612622	BH0059	BH0059	-	BH0059~unknown conserved protein in B. subtilis	
60	 46.77       77286..77471    	 +	61	15612623	sspF	BH0060	-	small acid-soluble spore protein (minor alpha/beta-type SASP)	
61	 47.45 +1    77678..78541    	 +	287	15612624	BH0061	BH0061	I	isopentenyl monophosphate kinase	
62	 45.58       78601..79449    	 +	282	15612625	purR	BH0062	F	transcriptional repressor of the purine operon	
63	 42.93       79446..79820    	 +	124	15612626	BH0063	BH0063	J	translation initiation inhibitor	
64	 45.58       80114..80407    	 +	97	15612627	spoVG	BH0064	M	stage V sporulation protein G	
65	 45.39       80675..82042    	 +	455	15612628	gcaD	BH0065	M	UDP-N-acetylglucosamine pyrophosphorylase	
66	 43.85       82067..83017    	 +	316	15612629	prs	BH0066	F	phosphoribosyl pyrophosphate synthetase	
67	 45.52       83118..83765    	 +	215	15612630	ctc	BH0067	J	50S ribosomal protein L25	
68	 46.42       83931..84488    	 +	185	15612631	spoVC	BH0068	J	stage V sporulation protein C (peptidyl-tRNA hydrolase)	
69	 44.59       85041..88586    	 +	1181	15612632	mfd	BH0069	L	transcription-repair coupling factor (TRCF)	
70	 44.81       88747..89286    	 +	179	15612633	spoVT	BH0070	K	stage V sporulation protein T	
71	 48.06 +1    89424..91025    	 +	533	15612634	BH0071	BH0071	R	BH0071~unknown conserved protein	
72	 46.07       91046..92521    	 +	491	15612635	BH0072	BH0072	R	BH0072~unknown conserved protein	
73	 37.83 -1    92524..92790    	 +	88	15612636	BH0073	BH0073	J	BH0073~unknown conserved protein	
74	 43.59       92968..93279    	 +	103	15612637	BH0074	BH0074	-	BH0074~unknown conserved protein in B. subtilis	
75	 40.03       93276..93872    	 +	198	15612638	BH0075	BH0075	-	BH0075~unknown conserved protein in bacilli	
76	 39.37 -1    93878..94258    	 +	126	15612639	divIC	BH0076	O	cell-division initiation protein (septum formation)	
77	 48.07 +1    94333..94746    	 +	137	15612640	BH0077	BH0077	J	BH0077~unknown conserved protein in bacilli	
78	 44.69       95376..97868    	 +	830	15612641	spoIIE	BH0078	T	stage II sporulation protein E	
79	 41.70       98027..98767    	 +	246	15612642	BH0079	BH0079	R	BH0079~unknown conserved protein	
80	 45.83       98730..99713    	 +	327	15612643	BH0080	BH0080	T	serine/threonine-protein kinase	
81	 46.03       99747..100502   	 +	251	15612644	BH0081	BH0081	S	BH0081~unknown conserved protein in others	
82	 48.12 +1   100518..100970   	 +	150	15612645	BH0082	BH0082	S	BH0082~unknown	
83	 45.14      100951..102339   	 +	462	15612646	BH0083	BH0083	D	cell-cycle protein	
84	 42.04      102378..102917   	 +	179	15612647	hprT	BH0084	F	hypoxanthine-guanine phosphoribosyltransferase	
85	 45.74      102986..104959   	 +	657	15612648	ftsH	BH0085	O	cell-division protein (ATP-dependent Zn metallopeptidase)	
86	 41.44      105179..105943   	 +	254	15612649	BH0086	BH0086	K	BH0086~unknown conserved protein	
87	 48.74 +1   105959..106834   	 +	291	15612650	BH0087	BH0087	O	BH0087~unknown conserved protein	
88	 45.35      107007..107930   	 +	307	15612651	cysK	BH0088	E	cysteine synthase A	
89	 47.95 +1   108136..109353   	 +	405	15612652	BH0089	BH0089	L	transposase (01)	
90	 46.75      109552..111012   	 +	486	15612653	pabB	BH0090	E	para-aminobenzoate synthase component I	
91	 46.23      111031..111627   	 +	198	15612654	pabA	BH0091	E	para-aminobenzoate synthetase  glutamine amidotransferase component II/anthranilate synthase component II	
92	 45.16      111611..112498   	 +	295	15612655	pabC	BH0092	E	4-amino-4-deoxychorismate lyase	
93	 46.86      112476..113318   	 +	280	15612656	sul	BH0093	H	dihydropteroate synthase (dihydropteroate pyrophosphorylase)	
94	 46.09      113326..113670   	 +	114	15612657	folA	BH0094	H	dihydroneopterin aldolase	
95	 44.76      113671..114195   	 +	174	15612658	folK	BH0095	H	2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase	
96	 45.95      114147..114368   	 +	73	15612659	BH0096	BH0096	K	BH0096~unknown conserved protein	
97	 45.67      114382..115386   	 +	334	15612660	BH0097	BH0097	R	transcriptional regulator involved in nitrogen regulation (NifR3/Smm1 family)	
98	 44.56      115500..117005   	 +	501	15612661	lysS	BH0098	J	lysyl-tRNA synthetase	
99	 47.97 +1   130700..131956   	 +	418	15612662	BH0099	BH0099	L	transposase (11)	
100	 39.49 -1   132792..133262   	 +	156	15612663	ctsR	BH0100	-	transcriptional repressor of class III stress genes	

 
 43.65 MEAN 
 
 3.70  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.