IslandPathversion 1.0

IslandPath Analysis: Borrelia burgdorferi B31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 28.42 STD DEV: 3.85
Borrelia burgdorferi, complete genome - 0..910724
851 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 23.04 -1      105..677      	 +	190	15594347	BB0001	BB0001	-	B. burgdorferi predicted coding region BB0001	
2	 27.79         768..1796     	 -	342	15594348	BB0002	BB0002	G	beta-N-acetylhexosaminidase, putative	
3	 28.50        1784..3148     	 -	454	15594349	BB0003	BB0003	-	B. burgdorferi predicted coding region BB0003	
4	 26.92        3395..5188     	 +	597	15594350	BB0004	BB0004	G	phosphoglucomutase (femD)	
5	 32.49 +1     5251..6312     	 -	353	15594351	BB0005	BB0005	J	tryptophanyl-tRNA synthetase (trsA)	
6	 28.09        6309..7433     	 -	374	15594352	BB0006	BB0006	R	conserved hypothetical integral membrane protein	
7	 29.02        7458..8315     	 -	285	15594353	BB0007	BB0007	-	B. burgdorferi predicted coding region BB0007	
8	 27.61        8412..9197     	 +	261	15594354	BB0008	BB0008	S	conserved hypothetical protein	
9	 25.17        9202..10206    	 +	334	15594355	BB0009	BB0009	-	B. burgdorferi predicted coding region BB0009	
10	 25.07       10203..10577    	 +	124	15594356	BB0010	BB0010	I	holo-acyl-carrier protein synthase, putative	
11	 29.05       10581..11420    	 +	279	15594357	BB0011	BB0011	S	B. burgdorferi predicted coding region BB0011	
12	 27.13       11421..12161    	 +	246	15594358	BB0012	BB0012	J	pseudouridylate synthase I (hisT)	
13	 23.67 -1    12154..12753    	 +	199	15594359	BB0013	BB0013	-	B. burgdorferi predicted coding region BB0013	
14	 26.37       12746..14728    	 +	660	15594360	BB0014	BB0014	L	primosomal protein N (priA)	
15	 30.77       14725..15348    	 -	207	15594361	BB0015	BB0015	F	uridine kinase (udk)	
16	 28.84       15345..15722    	 -	125	15594362	BB0016	BB0016	P	glpE protein (glpE)	
17	 28.75       15845..16804    	 +	319	15594363	BB0017	BB0017	S	conserved hypothetical integral membrane protein	
18	 27.70       16807..17817    	 -	336	15594364	BB0018	BB0018	J	conserved hypothetical protein	
19	 27.10       17792..18304    	 -	170	15594365	BB0019	BB0019	-	B. burgdorferi predicted coding region BB0019	
20	 30.82       18312..19979    	 -	555	15594366	BB0020	BB0020	G	pyrophosphate--fructose 6-phosphate 1-phosphotransferase, beta subunit (pfpB)	
21	 28.24       20445..21092    	 -	215	15594367	BB0021	BB0021	J	S-adenosylmethionine: tRNA ribosyltransferase-isomerase	
22	 34.29 +1    21058..22101    	 -	347	15594368	BB0022	BB0022	L	Holliday junction DNA helicase (ruvB)	
23	 29.29       22146..22739    	 -	197	15594369	BB0023	BB0023	L	Holliday junction DNA helicase (ruvA)	
24	 29.74       22819..23958    	 +	379	15594370	BB0024	BB0024	G	B. burgdorferi predicted coding region BB0024	
25	 32.79 +1    23965..24696    	 -	243	15594371	BB0025	BB0025	S	conserved hypothetical protein	
26	 32.15       24697..25623    	 -	308	15594372	BB0026	BB0026	H	methylenetetrahydrofolate dehydrogenase (folD)	
27	 29.58       25753..26391    	 +	212	15594373	BB0027	BB0027	-	B. burgdorferi predicted coding region BB0027	
28	 30.10       26399..27448    	 +	349	15594374	BB0028	BB0028	-	B. burgdorferi predicted coding region BB0028	
29	 21.76 -1    27434..27865    	 -	143	15594375	BB0029	BB0029	S	conserved hypothetical protein	
30	 23.58 -1    27855..28490    	 -	211	15594376	BB0030	BB0030	-	signal peptidase I (lepB-1)	
31	 28.13       28492..29472    	 -	326	15594377	BB0031	BB0031	N	signal peptidase I (lepB-2)	
32	 25.39       29543..31015    	 +	490	15594378	BB0032	BB0032	-	B. burgdorferi predicted coding region BB0032	
33	 24.06 -1    31027..31479    	 +	150	15594379	BB0033	BB0033	O	small protein (smpB)	
34	 35.93 +1    31550..32089    	 -	179	15594380	BB0034	BB0034	-	B. burgdorferi predicted coding region BB0034	
35	 27.80       32157..34037    	 -	626	15594381	BB0035	BB0035	L	DNA topoisomerase IV (parC)	
36	 29.39       34037..35836    	 -	599	15594382	BB0036	BB0036	L	DNA topoisomerase IV (parE)	
37	 27.36       35857..36609    	 -	250	15594383	BB0037	BB0037	I	1-acyl-sn-glycerol-3-phosphate acetyltransferase (plsC)	
38	 25.96       36606..38123    	 -	505	15594384	BB0038	BB0038	-	B. burgdorferi predicted coding region BB0038	
39	 25.68       38136..39638    	 -	500	15594385	BB0039	BB0039	-	B. burgdorferi predicted coding region BB0039	
40	 25.82       39826..40677    	 +	283	15594386	BB0040	BB0040	N	chemotaxis protein methyltransferase (cheR-1)	
41	 21.51 -1    40677..40769    	 +	30	15594387	BB0041	BB0041	-	conserved hypothetical protein	
42	 26.64       40761..41432    	 -	223	15594388	BB0042	BB0042	P	phosphate transport system regulatory protein (phoU)	
43	 27.76       41443..42483    	 -	346	15594389	BB0043	BB0043	-	B. burgdorferi predicted coding region BB0043	
44	 22.14 -1    42480..42881    	 -	133	15594390	BB0044	BB0044	-	B. burgdorferi predicted coding region BB0044	
45	 25.98       42907..45366    	 -	819	15594391	BB0045	BB0045	D	P115 protein	
46	 28.39       45446..45991    	 +	181	15594392	BB0046	BB0046	L	ribonuclease H (rnhB)	
47	 33.85 +1    46011..46394    	 -	127	15594393	BB0047	BB0047	-	conserved hypothetical protein	
48	 28.07       46601..46771    	 -	56	15594394	BB0048	BB0048	-	B. burgdorferi predicted coding region BB0048	
49	 29.17       46921..47040    	 -	39	15594395	BB0049	BB0049	-	B. burgdorferi predicted coding region BB0049	
50	 28.15       47167..47841    	 +	224	15594396	BB0050	BB0050	S	conserved hypothetical integral membrane protein	
51	 25.21       47905..48606    	 +	233	15594397	BB0051	BB0051	S	conserved hypothetical integral membrane protein	
52	 27.85       48603..49259    	 -	218	15594398	BB0052	BB0052	J	spoU protein (spoU)	
53	 27.98       49341..50012    	 +	223	15594399	BB0053	BB0053	L	uracil DNA glycosylase (ung)	
54	 28.57       50112..50489    	 -	125	15594400	BB0054	BB0054	N	B. burgdorferi predicted coding region BB0054	
55	 33.33 +1    50490..51251    	 -	253	15594401	BB0055	BB0055	G	triosephosphate isomerase	
56	 35.70 +1    51253..52434    	 -	393	15594402	BB0056	BB0056	G	phosphoglycerate kinase (pgk)	
57	 36.11 +1    52454..53461    	 -	335	15594403	BB0057	BB0057	G	glyceraldehyde 3-phosphate dehydrogenase (gap)	
58	 27.25       53534..55504    	 -	656	15594404	BB0058	BB0058	R	B. burgdorferi predicted coding region BB0058	
59	 31.41       55501..56280    	 -	259	15594405	BB0059	BB0059	N	hemolysin (tlyC)	
60	 25.85       56281..56748    	 -	155	15594406	BB0060	BB0060	R	conserved hypothetical protein	
61	 31.07       56832..57185    	 -	117	15594407	BB0061	BB0061	O	thioredoxin (trxA)	
62	 25.24       57259..57975    	 +	238	15594408	BB0062	BB0062	S	B. burgdorferi predicted coding region BB0062	
63	 29.37       58029..59036    	 -	335	15594409	BB0063	BB0063	S	B. burgdorferi predicted coding region BB0063	
64	 30.99       59101..60039    	 -	312	15594410	BB0064	BB0064	J	methionyl-tRNA formyltransferase (fmt)	
65	 33.33 +1    60036..60554    	 -	172	15594411	BB0065	BB0065	J	polypeptide deformylase (def)	
66	 24.64       60568..61257    	 -	229	15594412	BB0066	BB0066	-	B. burgdorferi predicted coding region BB0066	
67	 30.92       61254..63032    	 -	592	15594413	BB0067	BB0067	E	peptidase, putative	
68	 28.12       63147..64028    	 +	293	15594414	BB0068	BB0068	R	conserved hypothetical protein	
69	 31.64       64038..65276    	 +	412	15594415	BB0069	BB0069	E	aminopeptidase II	
70	 32.47 +1    65291..65752    	 +	153	15594416	BB0070	BB0070	S	conserved hypothetical protein	
71	 23.96 -1    65768..67240    	 +	490	15594417	BB0071	BB0071	-	B. burgdorferi predicted coding region BB0071	
72	 24.98       67248..69569    	 +	773	15594418	BB0072	BB0072	C	B. burgdorferi predicted coding region BB0072	
73	 22.10 -1    69566..70126    	 +	186	15594419	BB0073	BB0073	-	B. burgdorferi predicted coding region BB0073	
74	 32.95 +1    70173..71219    	 +	348	15594420	BB0074	BB0074	J	peptide chain release factor 2 (prfB)	
75	 24.68       71201..72610    	 +	469	15594421	BB0075	BB0075	-	B. burgdorferi predicted coding region BB0075	
76	 24.47 -1    72647..73492    	 +	281	15594422	BB0076	BB0076	N	cell division protein, putative	
77	 23.13 -1    73489..74517    	 +	342	15594423	BB0077	BB0077	-	B. burgdorferi predicted coding region BB0077	
78	 25.29       74518..75039    	 +	173	15594424	BB0078	BB0078	R	B. burgdorferi predicted coding region BB0078	
79	 22.02 -1    75110..75772    	 +	220	15594425	BB0079	BB0079	R	B. burgdorferi predicted coding region BB0079	
80	 26.56       75732..76454    	 +	240	15594426	BB0080	BB0080	R	ABC transporter, ATP-binding protein	
81	 21.82 -1    76451..77701    	 +	416	15594427	BB0081	BB0081	R	conserved hypothetical protein	
82	 28.18       77711..79009    	 -	432	15594428	BB0082	BB0082	-	B. burgdorferi predicted coding region BB0082	
83	 27.73       79002..79376    	 -	124	15594429	BB0083	BB0083	-	B. burgdorferi predicted coding region BB0083	
84	 26.87       79505..80773    	 +	422	15594430	BB0084	BB0084	E	aminotransferase (nifS)	
85	 26.76       80983..81408    	 +	141	15594431	BB0085	BB0085	C	B. burgdorferi predicted coding region BB0085	
86	 30.92       81405..82940    	 +	511	15594432	BB0086	BB0086	O	conserved hypothetical protein	
87	 31.76       82970..83920    	 -	316	15594433	BB0087	BB0087	C	L-lactate dehydrogenase (ldh)	
88	 32.14       84041..85720    	 -	559	15594434	BB0088	BB0088	N	GTP-binding membrane protein (lepA)	
89	 26.15       85880..86854    	 -	324	15594435	BB0089	BB0089	-	B. burgdorferi predicted coding region BB0089	
90	 38.62 +2    86926..87360    	 -	144	15594436	BB0090	BB0090	C	V-type ATPase, subunit K, putative	
91	 28.30       87377..89203    	 -	608	15594437	BB0091	BB0091	C	V-type ATPase, subunit I, putative	
92	 27.97       89200..89814    	 -	204	15594438	BB0092	BB0092	C	V-type ATPase, subunit D (atpD)	
93	 35.33 +1    89811..91115    	 -	434	15594439	BB0093	BB0093	C	V-type ATPase, subunit B (atpB)	
94	 35.02 +1    91137..92792    	 -	551	15594440	BB0094	BB0094	C	V-type ATPase, subunit A (atpA)	
95	 24.18 -1    92878..93423    	 -	181	15594441	BB0095	BB0095	-	B. burgdorferi predicted coding region BB0095	
96	 31.34       93433..94035    	 -	200	15594442	BB0096	BB0096	C	V-type ATPase, subunit E, putative	
97	 29.72       94219..94605    	 -	128	15594443	BB0097	BB0097	-	B. burgdorferi predicted coding region BB0097	
98	 26.63       94611..96953    	 -	780	15594444	BB0098	BB0098	L	DNA mismatch repair protein, putative	
99	 28.90       96943..97866    	 -	307	15594445	BB0099	BB0099	R	conserved hypothetical protein	
100	 26.46       97863..98648    	 -	261	15594446	BB0100	BB0100	M	glutamate racemase (murI)	

 
 28.42 MEAN 
 
 3.85  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.