IslandPathversion 1.0 




IslandPath Analysis: Aquifex aeolicus VF5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.45   STD DEV: 3.70

Aquifex aeolicus complete genome - 0..1551335
1529 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 46.33           1..2100     	 +	699	15605613	fusA	aq_001	J	elongation factor EF-G	
2	 49.59 +1     2117..3334     	 +	405	15605614	tufA1	aq_005	J	elongation factor EF-Tu	
3	 46.03        3346..3660     	 +	104	15605615	rpsJ	aq_008	J	ribosomal protein S10	
4	 48.21 +1     3665..4390     	 +	241	15605616	rplC	aq_009	J	ribosomal protein L03	
5	 43.17        4387..4986     	 +	199	15605617	rplD	aq_011	J	ribosomal protein L04	
6	 41.67        4990..5301     	 +	103	15605618	rplW	aq_012	J	ribosomal protein L23	
7	 49.18 +1     5313..6227     	 +	304	15605619	rplB	aq_013	J	ribosomal protein L02	
8	 45.10        6340..6900     	 +	186	15605620	rpsS	aq_015	J	ribosomal protein S19	
9	 46.80        7018..7314     	 +	98	15605621	rplV	aq_016a	J	ribosomal protein L22	
10	 47.73 +1     7317..7955     	 +	212	15605622	rpsC	aq_017	J	ribosomal protein S03	
11	 49.65 +1     8017..8445     	 +	142	15605623	rplP	aq_018	J	ribosomal protein L16	
12	 37.39 -1     8457..8678     	 +	73	15607133	rpmC	aq_018a	J	50S Ribosomal protein L29	
13	 44.75        8678..9001     	 +	107	15605624	rpsQ	aq_020	J	ribosomal protein S17	
14	 42.42        9001..9660     	 +	219	15605625	aroD	aq_021	E	3-dehydroquinate dehydratase	
15	 41.32        9657..10157    	 -	166	15605626	-	aq_022	R	putative protein	
16	 45.62       10169..11299    	 -	376	15605627	argD	aq_023	E	N-acetylornithine aminotransferase	
17	 44.52       11296..12609    	 -	437	15605628	nsd	aq_024	M	nucleotide sugar dehydrogenase	
18	 43.07       12887..14005    	 -	372	15605629	rodA	aq_025	D	rod shape determining protein RodA	
19	 43.33       13974..14183    	 -	69	15607137	thiS	aq_025a	H	Sulfur transfer protein involved in thiamine biosynthesis	
20	 45.13       14174..14656    	 -	160	15605630	-	aq_026	I	putative protein	
21	 39.91       14676..16454    	 -	592	15605631	-	aq_027	T	hypothetical protein	
22	 40.42       16527..17006    	 -	159	15605632	-	aq_028	-	putative protein	
23	 48.30 +1    17053..18261    	 +	402	15605633	moeA1	aq_030	H	molybdenum cofactor biosynthesis protein A	
24	 46.09       18275..19615    	 +	446	15605634	trnS	aq_031	P	transporter (Pho87 family)	
25	 49.20 +1    19620..21062    	 +	480	15605635	-	aq_032	S	hypothetical protein	
26	 38.12 -1    21051..22346    	 -	431	15605636	-	aq_035	T	hypothetical protein	
27	 41.62       22379..22885    	 +	168	15605637	-	aq_036	H	hypothetical protein	
28	 40.91       22998..23525    	 +	175	15605638	-	aq_037	-	putative protein	
29	 42.91       23541..24407    	 +	288	15605639	hibD	aq_038	I	3-hydroxyisobutyrate dehydrogenase	
30	 46.29       24404..24982    	 -	192	15605640	hisB	aq_039	E	imidazoleglycerolphosphate dehydratase	
31	 40.29       24997..26217    	 -	406	15605641	-	aq_040	R	putative protein	
32	 41.67       26274..26585    	 -	103	15605642	-	aq_041	L	putative protein	
33	 43.85       26618..27340    	 -	240	15605643	cyc	aq_042	C	cytochrome c	
34	 45.69       27337..28566    	 -	409	15605644	petB	aq_044	C	cytochrome b	
35	 48.72 +1    28580..29125    	 -	181	15605645	petA	aq_045	C	Rieske-I iron sulfur protein	
36	 46.69       29251..30171    	 +	306	15605646	pyrD	aq_046	F	dihydroorotase dehydrogenase	
37	 42.67       30179..30478    	 +	99	15605647	phhB	aq_049	H	pterin-4a-carbinolamine dehydratase	
38	 35.60 -2    30475..33036    	 +	853	15605648	-	aq_050	M	putative protein	
39	 42.46       33033..33887    	 -	284	15605649	ubiA	aq_052	H	4-hydroxybenzoate octaprenyltransferase	
40	 44.17       33884..34963    	 -	359	15605650	mraY	aq_053	M	phospho-N-acetylmuramoyl-pentapeptide-transferase	
41	 44.01       34963..35580    	 -	205	15605651	-	aq_054	-	putative protein	
42	 40.71       35564..36322    	 +	252	15605652	hemX1	aq_055	O	cytochrome c biogenesis protein	
43	 44.59       36306..36758    	 -	150	15605653	fabZ	aq_056	I	(3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase	
44	 39.69 -1    36782..37426    	 +	214	15605654	sfsA	aq_057	G	sugar fermentation stimulation protein	
45	 39.32 -1    37923..38273    	 +	116	15605655	-	aq_058	-	putative protein	
46	 50.19 +1    38395..38922    	 +	175	15605656	-	aq_059	R	hypothetical protein	
47	 45.44       38923..39459    	 -	178	15605657	mog	aq_061	H	molybdenum cofactor biosynthesis MOG	
48	 46.86       39496..40338    	 +	280	15605658	speE	aq_062	E	spermidine synthase	
49	 43.54       40413..40745    	 +	110	15605659	rpsF	aq_063	J	ribosomal protein S06	
50	 43.24       40735..41178    	 +	147	15605660	ssb	aq_064	L	single stranded DNA-binding protein	
51	 41.10       41197..41415    	 +	72	15605661	rpsR	aq_064a	J	ribosomal protein S18	
52	 44.44       41470..41649    	 +	59	15605662	-	aq_064b	N	hypothetical protein	
53	 46.58       41650..41883    	 +	77	15605663	-	aq_064c	N	hypothetical protein	
54	 38.93 -1    41880..42773    	 -	297	15605664	-	aq_065	R	hypothetical protein	
55	 46.03       42795..43763    	 +	322	15605665	-	aq_066	P	hypothetical protein	
56	 45.61       43756..44268    	 -	170	15605666	dmsB2	aq_067	C	dimethylsulfoxide reductase chain B	
57	 47.34 +1    44501..44857    	 -	118	15605667	rplQ	aq_069	J	ribosomal protein L17	
58	 42.98       44863..45816    	 -	317	15605668	rpoA	aq_070	K	RNA polymerase alpha subunit	
59	 44.65       45829..46464    	 -	211	15605669	rpsD	aq_072	J	ribosomal protein S04	
60	 48.68 +1    46465..46842    	 -	125	15605670	rpsK	aq_073	J	ribosomal protein S11	
61	 45.93       46858..47238    	 -	126	15605671	rpsM	aq_074	J	ribosomal protein S13	
62	 43.33       47216..47365    	 -	49	15605672	rpmJ	aq_075	J	ribosomal protein L36	
63	 48.56 +1    47426..47668    	 -	80	15605673	infA	aq_075a	J	initiation factor IF-1	
64	 47.62 +1    47671..48447    	 -	258	15605674	map	aq_076	J	methionyl aminopeptidase	
65	 44.77       48437..49057    	 -	206	15605675	kad	aq_078	F	adenylate kinase	
66	 44.88       49062..50351    	 -	429	15605676	secY	aq_079	N	preprotein translocase SecY	
67	 47.62 +1    50396..50605    	 +	69	15605677	rpmB	aq_080	J	ribosomal protein L28	
68	 49.29 +1    50605..51801    	 +	398	15605678	aroC	aq_081	E	chorismate synthase	
69	 35.66 -2    51803..52405    	 +	200	15605679	-	aq_082	O	putative protein	
70	 41.10       52390..53406    	 -	338	15605680	-	aq_083	T	hypothetical protein	
71	 48.26 +1    53671..54474    	 +	267	15605681	kdsA	aq_085	M	3-deoxy-d-manno-octulosonic acid 8-phosphate synthase	
72	 43.74       54471..55133    	 +	220	15605682	modC	aq_086	P	Molybdenum transport system permease	
73	 48.54 +1    55256..55597    	 +	113	15605683	-	aq_087	-	putative protein	
74	 47.92 +1    55612..55947    	 +	111	15605684	-	aq_088	-	putative protein	
75	 44.94       55975..56379    	 +	134	15605685	-	aq_090	I	putative protein	
76	 44.95       56372..57964    	 +	530	15607134	-	aq_091m	K	AAA family ATPase	
77	 46.01       57961..60366    	 -	801	15605686	nrdA	aq_094	F	ribonucleotide reductase alpha chain	
78	 43.63       60452..61675    	 -	407	15605687	-	aq_097	-	putative protein	
79	 46.20       61696..61998    	 +	100	15605688	secG	aq_098	N	protein export membrane protein SecG	
80	 42.67       61934..62779    	 +	281	15605689	hemK	aq_099	J	protoporphyrinogen oxidase	
81	 43.49       62770..64020    	 +	416	15605690	hly3	aq_101	N	hemolysin	
82	 42.51       63986..64726    	 -	246	15605691	-	aq_103	R	hypothetical protein	
83	 43.85       64729..65841    	 -	370	15605692	-	aq_104	C	hypothetical protein	
84	 40.83       65727..66446    	 +	239	15605693	-	aq_106	-	putative protein	
85	 37.96 -1    65828..66151    	 -	107	15607135	rbfA	aq_106a	J	Ribosome-binding factor A	
86	 46.46       66706..66903    	 +	65	15605694	fdx4	aq_108a	C	ferredoxin	
87	 41.98       66900..67142    	 -	80	15605695	hfq	aq_108b	R	host factor I	
88	 46.31       67339..67677    	 +	112	15605696	glnB	aq_109	E	nitrogen regulatory PII protein	
89	 47.09       67698..69107    	 +	469	15605697	glnA	aq_111	E	glutamine synthetase	
90	 46.62       69169..70440    	 +	423	15605698	amtB	aq_112	P	ammonium transporter	
91	 46.04       70454..71500    	 +	348	15605699	-	aq_113	-	putative protein	
92	 44.90       71803..72243    	 -	146	15605700	-	aq_114	S	putative protein	
93	 42.99       72560..74122    	 -	520	15605701	-	aq_116	-	putative protein	
94	 47.82 +1    74123..75316    	 -	397	15605702	pgk	aq_118	G	phosphoglycerate kinase	
95	 46.48       75328..75981    	 -	217	15605703	talC	aq_119	G	transaldolase	
96	 46.65       76010..77038    	 -	342	15605704	-	aq_121	C	hypothetical protein	
97	 47.03       77035..78246    	 -	403	15605705	hisS1	aq_122	J	histidyl-tRNA synthetase	
98	 41.89       78328..78666    	 +	112	15605706	rpsP	aq_123	J	ribosomal protein S16	
99	 45.83       78663..78902    	 +	79	15605707	-	aq_124a	R	hypothetical protein	
100	 37.09 -1    78902..79300    	 +	132	15605708	-	aq_125	-	putative protein	

 
 43.45 MEAN 
 
 3.70  STD DEV 






Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.