IslandPathversion 1.0

IslandPath Analysis: Agrobacterium tumefaciens C58 Uwash Lineaer



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.32 STD DEV: 3.51
Agrobacterium tumefaciens str. C58 (U. Washington) chromosome linear, complete sequence - 0..2075560
1876 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID		Gene	Synonym	Code	Product

1	 50.36 -2      622..897      	 +	91	17936712	-	Atu3000	-	hypothetical protein	
2	 45.66 -2      935..1648     	 -	237	17936713	-	Atu3001	-	hypothetical protein	
3	 47.88 -2     1805..1969     	 -	54	17936714	tnp	Atu3002	-	transposase	
4	 54.17 -1     1992..2375     	 -	127	17936715	tnp	Atu3003	-	transposase	
5	 51.90 -2     2559..2978     	 +	139	17936716	-	Atu3005	-	hypothetical protein	
6	 43.13 -2     3385..4803     	 -	472	17936717	-	Atu3006	-	hypothetical protein	
7	 47.45 -2     4823..5077     	 -	84	17936718	-	Atu3007	-	conserved hypothetical protein	
8	 43.59 -2     5170..5364     	 +	64	17936719	-	Atu3008	-	hypothetical protein	
9	 42.13 -2     5502..6569     	 +	355	17936720	exoZ	Atu3009	-	exopolysaccharide production protein	
10	 61.03        6596..7375     	 -	259	17936721	-	Atu3010	-	conserved hypothetical protein	
11	 65.50 +1     7516..7857     	 -	113	17936722	-	Atu3011	-	transcriptional regulator, ArsR family	
12	 54.49 -1     8085..8774     	 -	229	17936723	-	Atu3012	-	hypothetical protein	
13	 51.36 -2     8932..9336     	 -	134	17936724	-	Atu3013	-	conserved hypothetical protein	
14	 54.92 -1     9333..9596     	 -	87	17936725	-	Atu3014	-	conserved hypothetical protein	
15	 59.60        9990..10541    	 +	183	17936726	-	Atu3015	-	conserved hypothetical protein	
16	 59.33       10581..10880    	 +	99	17936727	gpmB	Atu3016	-	phosphoglyceromutase	
17	 53.74 -1    10877..11170    	 +	97	17936728	-	Atu3017	-	phosphoglyceromutase	
18	 55.21 -1    11241..11624    	 +	127	17936729	-	Atu3018	-	conserved hypothetical protein	
19	 56.80       11695..12231    	 -	178	17936730	-	Atu3019	-	conserved hypothetical protein	
20	 56.40       12663..13373    	 +	236	17936731	-	Atu3020	-	transcriptional regulator, GntR family	
21	 60.04       13404..14519    	 +	371	17936732	-	Atu3021	-	ABC transporter, nucleotide binding/ATPase protein [sugar]	
22	 56.56       14516..15445    	 +	309	17936733	-	Atu3022	-	ABC transporter, membrane spanning protein [sugar]	
23	 56.92       15457..16338    	 +	293	17936734	-	Atu3023	-	ABC transporter, membrane spanning protein [sugar]	
24	 57.17       16360..17928    	 +	522	17936735	-	Atu3024	-	ABC transporter, membrane spanning protein [sugar]	
25	 58.82       18000..20330    	 +	776	17936736	-	Atu3025	-	oligo alginate lyase	
26	 62.40       20346..21095    	 +	249	17936737	-	Atu3026	-	short chain dehydrogenase	
27	 60.64       22317..23312    	 +	331	17936738	-	Atu3027	-	dehydrogenase	
28	 56.52       23309..24106    	 +	265	17936739	-	Atu3028	-	conserved hypothetical protein	
29	 56.25       24106..25353    	 +	415	17936740	gudD	Atu3029	-	glucarate dehydratase	
30	 60.21       25386..25772    	 -	128	17936741	-	Atu3030	-	hypothetical protein	
31	 58.90       25856..26074    	 +	72	17936742	-	Atu3031	-	conserved hypothetical protein	
32	 56.79       26119..26523    	 +	134	17936743	-	Atu3032	-	hypothetical protein	
33	 62.92 +1    26588..26827    	 +	79	17936744	-	Atu3033	-	hypothetical protein	
34	 65.39 +1    26846..27394    	 +	182	17936745	-	Atu3034	-	transcriptional regulator, ROK family	
35	 60.16       27543..29786    	 -	747	17936746	-	Atu3035	-	two component response regulator	
36	 62.39       30030..31058    	 +	342	17936747	-	Atu3036	-	ABC transporter, membrane spanning protein [dipeptide]	
37	 60.09       31058..31939    	 +	293	17936748	moaE	Atu3037	-	ABC transporter, membrane spanning protein [dipeptide]	
38	 60.23       31944..33590    	 +	548	17936749	moaD	Atu3038	-	ABC transporter, nucleotide binding/ATPase protein [dipeptide]	
39	 62.17       33607..35163    	 +	518	17936750	-	Atu3039	-	hydantoinase	
40	 63.58 +1    35156..36289    	 +	377	17936751	-	Atu3040	-	conserved hypothetical protein	
41	 57.43       36333..37946    	 +	537	17936752	-	Atu3041	-	ABC transporter, substrate binding protein [dipeptide]	
42	 63.60 +1    38062..39138    	 +	358	17936753	-	Atu3042	-	conserved hypothetical protein	
43	 61.99       39135..40673    	 +	512	17936754	hyuA	Atu3043	-	hydantoinase A	
44	 64.02 +1    40718..41662    	 +	314	17936755	asg	Atu3044	-	asparaginase	
45	 57.76       41728..42075    	 -	115	17936756	-	Atu3045	-	hypothetical protein	
46	 58.97       42142..43467    	 -	441	17936757	-	Atu3046	-	oxidoreductase	
47	 56.12       43479..44369    	 -	296	17936758	-	Atu3047	-	ABC transporter, membrane spanning protein [oligopeptide]	
48	 57.62       44411..45361    	 -	316	17936759	-	Atu3048	-	ABC transporter, membrane spanning protein [oligopeptide]	
49	 55.90       45491..47152    	 -	553	17936760	-	Atu3049	-	ABC transporter, substrate binding protein [oligopeptide]	
50	 59.83       47289..48620    	 -	443	17936761	agaE	Atu3050	-	oxidoreductase	
51	 60.48       48622..49332    	 -	236	17936762	mas1	Atu3051	-	agropine synthesis reductase	
52	 55.97       49329..49814    	 -	161	17936763	-	Atu3052	-	transcriptional regulator, MarR family	
53	 56.28       50103..51749    	 -	548	17936764	-	Atu3053	-	ABC transporter, nucleotide binding/ATPase protein [peptide]	
54	 59.15       52158..53327    	 +	389	17936765	-	Atu3054	-	conserved hypothetical protein	
55	 58.06       53527..54792    	 -	421	17936766	-	Atu3055	-	hypothetical protein	
56	 56.59       54837..56801    	 -	654	17936767	-	Atu3056	-	beta 1,3 glucan synthase catalytic subunit	
57	 55.47 -1    56933..58513    	 -	526	17936768	-	Atu3057	-	hypothetical protein	
58	 47.85 -2    58545..58730    	 +	61	17936769	-	Atu3058	-	hypothetical protein	
59	 57.32       58814..60397    	 +	527	17936770	-	Atu3059	-	Na+/H+ antiporter	
60	 58.93       60680..62644    	 -	654	17936771	-	Atu3060	-	ABC transporter, nucleotide binding/ATPase protein	
61	 57.74       62897..64666    	 +	589	17936772	-	Atu3061	-	GGDEF family protein	
62	 60.74       64905..65933    	 +	342	17936773	-	Atu3062	-	transcriptional regulator, LacI family	
63	 58.07       65966..66919    	 +	317	17936774	-	Atu3063	-	ABC transporter, nucleotide binding/ATPase protein	
64	 60.20       66916..67719    	 +	267	17936775	-	Atu3064	-	ABC transporter, nucleotide binding/ATPase protein	
65	 61.19       67716..68720    	 +	334	17936776	-	Atu3065	-	ABC transporter, membrane spanning protein [sugar]	
66	 59.27       68725..69792    	 +	355	17936777	-	Atu3066	-	resiniferatoxin-binding, phosphotriesterase-related protein	
67	 60.31       69817..70587    	 +	256	17936778	-	Atu3067	-	conserved hypothetical protein	
68	 62.32       70597..71493    	 -	298	17936779	-	Atu3068	-	ribokinase	
69	 61.68       71518..72360    	 +	280	17936780	-	Atu3069	-	conserved hypothetical protein	
70	 58.70       72375..73616    	 +	413	17936781	amaB	Atu3070	-	N-carbamoyl-beta-alanine amidohydrolase	
71	 57.41       73720..74205    	 +	161	17936782	-	Atu3071	-	conserved hypothetical protein	
72	 61.63       74679..78668    	 -	1329	17936783	-	Atu3072	-	peptide synthetase	
73	 57.86       78878..79570    	 -	230	17936784	-	Atu3073	-	aspartate racemase	
74	 60.85       79776..80549    	 -	257	17936785	-	Atu3074	-	short chain dehydrogenase	
75	 60.93       80637..81281    	 +	214	17936786	-	Atu3075	-	transcriptional regulator, TetR family	
76	 62.21       81380..82702    	 -	440	17936787	uraA	Atu3076	-	uracil transport protein	
77	 56.22       82958..84115    	 -	385	17936788	ampC	Atu3077	-	beta-lactamase	
78	 63.37 +1    84250..85128    	 +	292	17936789	ampR	Atu3078	-	transcriptional regulator, LysR family	
79	 64.86 +1    85138..86355    	 -	405	17936790	chrA	Atu3079	-	chromate transport protein	
80	 65.44 +1    86458..87681    	 -	407	17936791	-	Atu3080	-	conserved hypothetical protein	
81	 60.93       87684..89060    	 -	458	17936792	-	Atu3081	-	conserved hypothetical protein	
82	 61.57       89045..89731    	 -	228	17936793	-	Atu3082	-	hypothetical protein	
83	 63.49 +1    89700..90140    	 -	146	17936794	-	Atu3083	-	conserved hypothetical protein	
84	 60.41       90137..90679    	 -	180	17936795	sigW	Atu3084	-	ECF family sigma factor	
85	 62.77       90831..91574    	 -	247	17936796	-	Atu3085	-	hydantoin Racemase	
86	 59.22       91586..92404    	 -	272	17936797	-	Atu3086	-	ABC transporter, membrane spanning protein [spermidine/putrescine]	
87	 57.79       92408..93319    	 -	303	17936798	-	Atu3087	-	ABC transporter, membrane spanning protein [spermidine/putrescine]	
88	 58.84       93557..94846    	 -	429	17936799	-	Atu3088	-	ABC transporter, substrate binding protein [spermidine/putrescine]	
89	 62.25       94877..95962    	 -	361	17936800	-	Atu3089	-	ABC transporter, nucleotide binding/ATPase protein [spermidine/putrescine]	
90	 59.02       96188..97168    	 -	326	17936801	-	Atu3090	-	polymerase epsilon subunit	
91	 58.58       97360..98262    	 +	300	17936802	-	Atu3091	-	conserved hypothetical protein	
92	 59.26       98299..98784    	 -	161	17936803	-	Atu3092	-	hypothetical protein	
93	 61.80       98881..99846    	 -	321	17936804	-	Atu3093	-	transglycosylase	
94	 60.22      100193..101977   	 -	594	17936805	mcpA	Atu3094	-	methyl-accepting chemotaxis protein	
95	 59.70      102214..102687   	 +	157	17936806	-	Atu3095	-	conserved hypothetical protein	
96	 56.77      102948..104291   	 +	447	17936807	ugpB	Atu3096	-	ABC transporter, substrate binding protein [sn-glycerol 3-phosphate]	
97	 59.71      104374..105264   	 +	296	17936808	ugpA	Atu3097	-	ABC transporter, membrane spanning protein [sn-Glycerol-3-phosphate]	
98	 62.15      105272..106156   	 +	294	17936809	ugpE	Atu3098	-	ABC transporter, membrane spanning protein [sn-Glycerol-3-phosphate]	
99	 62.57      106188..107309   	 +	373	17936810	ugpC	Atu3099	-	ABC transporter, nucleotide binding/ATPase protein [sn-Glycerol-3-phosphate]	
100	 54.83 -1   107382..108209   	 -	275	17936811	-	Atu3100	-	ABC transporter, membrane spanning protein [sugar]	

 
 59.32 MEAN 
 
 3.51  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.