IslandPath Analysis: Agrobacterium tumefaciens C58 Uwash Circular



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.40   STD DEV: 3.37
Agrobacterium tumefaciens str. C58 (U. Washington) chromosome circular, complete sequence - 0..2841490
2785 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID		Gene	Synonym	Code	Product

1	 57.91         203..1024     	 +	273	17933926	-	Atu0001	-	conserved hypothetical protein	
2	 57.83        1056..1655     	 +	199	17933927	maf	Atu0002	-	maf protein	
3	 57.72        1648..2508     	 +	286	17933928	aroE	Atu0003	-	shikimate 5-dehydrogenase	
4	 56.07        2505..3089     	 +	194	17933929	coaE	Atu0004	-	dephospho-CoA kinase	
5	 57.65        3110..3808     	 +	232	17933930	dnaQ	Atu0005	-	DNA polymerase III, epsilon chain	
6	 57.35        3907..4389     	 -	160	17933931	secB	Atu0006	-	protein-export protein SECB	
7	 59.96        4493..5029     	 -	178	17933932	fxsA	Atu0007	-	conserved hypothetical protein	
8	 59.33        5215..5868     	 +	217	17933933	-	Atu0008	-	conserved hypothetical protein	
9	 60.56        5865..6977     	 +	370	17933934	mltA	Atu0009	-	membrane-bound lytic murein transglycosylase	
10	 58.25        6974..7543     	 +	189	17933935	-	Atu0010	-	conserved hypothetical protein	
11	 58.74        7540..7905     	 +	121	17933936	-	Atu0011	-	transcriptional regulator	
12	 60.14        8049..10499    	 +	816	17933937	gyrB	Atu0012	-	DNA gyrase subunit B	
13	 57.38       10604..11206    	 -	200	17933938	-	Atu0013	-	NAD(P)H-flavin oxidoreductase	
14	 59.79       11335..12177    	 +	280	17933939	hpcE	Atu0014	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase	
15	 58.63       12279..13535    	 +	418	17933940	depA	Atu0015	-	intracellular PHB depolymerase	
16	 58.85       13605..14372    	 +	255	17933941	-	Atu0016	-	conserved hypothetical protein	
17	 55.96 -1    14475..15137    	 +	220	17933942	trpF	Atu0017	-	N-(5'-phosphoribosyl) anthranilate isomerase	
18	 59.38       15139..16359    	 +	406	17933943	trpB	Atu0018	-	tryptophan synthase beta subunit	
19	 59.42       16376..17203    	 +	275	17933944	trpA	Atu0019	-	tryptophan synthase alpha subunit	
20	 59.64       17231..18127    	 +	298	17933945	accD	Atu0020	-	acetyl-coenzyme A carboxyl transferase, beta subunit	
21	 57.83       18214..19593    	 +	459	17933946	folC	Atu0021	-	folylpolyglutamate synthase	
22	 57.94       19641..19961    	 -	106	17933947	trxA	Atu0022	-	thioredoxin C-1	
23	 61.58       20039..23596    	 -	1185	17933948	uvrD	Atu0023	-	ATP-dependant DNA helicase	
24	 63.94 +1    23586..26771    	 -	1061	17933949	-	Atu0024	-	conserved hypothetical protein	
25	 58.37       26768..27514    	 -	248	17933950	-	Atu0025	-	conserved hypothetical protein	
26	 58.20       27520..29031    	 -	503	17933951	-	Atu0026	-	conserved hypothetical protein	
27	 59.86       29028..31673    	 -	881	17933952	-	Atu0027	-	two component sensor kinase	
28	 54.32 -1    31670..31831    	 -	53	17933953	-	Atu0028	-	hypothetical protein	
29	 57.96       31882..33282    	 -	466	17933954	ahcY	Atu0029	-	S-adenosylhomocysteine hydrolase	
30	 62.32       33411..33686    	 -	91	17933955	ptsH	Atu0030	-	phosphocarrier protein HPr	
31	 55.47 -1    33698..34099    	 -	133	17933956	-	Atu0031	-	PTS system, IIA component	
32	 55.91 -1    34225..34689    	 -	154	17933957	-	Atu0032	-	conserved hypothetical protein	
33	 60.64       34679..36469    	 -	596	17933958	chvG	Atu0033	-	two component sensor kinase	
34	 58.95       36525..37250    	 -	241	17933959	chvI	Atu0034	-	two component response regulator	
35	 60.08       37514..39199    	 +	561	17933960	pckA	Atu0035	-	phosphoenolpyruvate carboxykinase	
36	 60.92       39327..39761    	 +	144	17933961	-	Atu0036	-	conserved hypothetical protein	
37	 56.86       39781..40749    	 -	322	17933962	panK	Atu0037	-	pantothenate kinase	
38	 59.88       40779..41102    	 -	107	17933963	hisE	Atu0038	-	phosphoribosyl-ATP pyrophosphohydrolase	
39	 58.94       41118..41894    	 -	258	17933964	hisF	Atu0039	-	imidazoleglycerol-phosphate synthase cyclase	
40	 59.81       41891..42634    	 -	247	17933965	hisA	Atu0040	-	phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase	
41	 60.98       42636..43286    	 -	216	17933966	hisH	Atu0041	-	glutamine amidotransferase	
42	 59.15       43469..43774    	 +	101	17933967	-	Atu0042	-	Hypothetical Protein	
43	 58.63       43805..44401    	 -	198	17933968	hisB	Atu0043	-	imidazoleglycerol-phosphate dehydratase	
44	 59.05       44602..45126    	 +	174	17933969	hslV	Atu0044	-	heat shock protein hslV	
45	 59.25       45214..46521    	 +	435	17933970	hslU	Atu0045	-	heat shock chaperone	
46	 57.04       46716..47681    	 +	321	17933971	-	Atu0046	-	conserved hypothetical protein	
47	 59.42       47736..49970    	 +	744	17933972	glcB	Atu0047	-	malate synthase G	
48	 59.29       50151..50936    	 -	261	17933973	-	Atu0048	-	conserved hypothetical protein	
49	 54.73 -1    51048..51533    	 +	161	17933974	-	Atu0049	-	conserved hypothetical protein	
50	 60.20       51594..52181    	 -	195	17933975	actR	Atu0050	-	two component response regulator	
51	 60.70       52255..53562    	 -	435	17933976	actS	Atu0051	-	two component sensor kinase	
52	 63.05 +1    53592..56078    	 -	828	17933977	hrpB	Atu0052	-	helicase	
53	 48.97 -2    59238..59627    	 -	129	17933978	-	Atu0056	-	hypothetical protein	
54	 52.71 -1    62235..62492    	 +	85	17933979	-	Atu0058	-	hypothetical protein	
55	 58.65       63196..65004    	 +	602	17933980	recQ	Atu0061	-	ATP-dependent DNA helicase	
56	 57.42       65054..66286    	 -	410	17933981	frcR	Atu0062	-	transcriptional regulator, ROK family	
57	 59.04       66551..67573    	 +	340	17933982	frcB	Atu0063	-	ABC transporter, substrate binding protein [sugar]	
58	 56.91       67774..68880    	 +	368	17933983	frcC	Atu0064	-	ABC transporter, membrane spanning protein [sugar]	
59	 59.26       68880..69662    	 +	260	17933984	frcA	Atu0065	-	ABC transporter, nucleotide binding/ATPase protein [sugar]	
60	 59.21       69659..70288    	 +	209	17933985	frcK	Atu0066	-	pantothenate kinase	
61	 54.78 -1    70385..70729    	 +	114	17933986	-	Atu0067	-	hypothetical protein	
62	 57.94       70923..71174    	 +	83	17933987	nrdH	Atu0068	-	glutaredoxin protein	
63	 56.64       71188..71586    	 +	132	17933988	nrdI	Atu0069	-	NrdI protein involved in ribonucleotide reduction	
64	 55.00 -1    71679..73760    	 +	693	17933989	nrdE	Atu0070	-	ribonucleoside-diphosphate reductase 2 alpha chain	
65	 56.62       73777..74751    	 +	324	17933990	nrdF	Atu0071	-	ribonucleoside-diphosphate reductase 2 beta chain	
66	 58.01       74781..76016    	 -	411	17933991	-	Atu0072	-	conserved hypothetical protein	
67	 61.45       76042..77172    	 +	376	17933992	recF	Atu0073	-	DNA replication and repair protein	
68	 60.63       77195..77956    	 +	253	17933993	moeB	Atu0074	-	molybdopterin biosynthesis protein	
69	 57.65       77960..78436    	 +	158	17933994	-	Atu0075	-	conserved hypothetical protein	
70	 58.70       78443..79132    	 -	229	17933995	-	Atu0076	-	hypothetical protein	
71	 61.49       79181..80185    	 -	334	17933996	-	Atu0077	-	D-isomer specific 2-hydroxyacid dehydrogenases family protein	
72	 62.04       80360..80899    	 +	179	17933997	-	Atu0078	-	conserved hypothetical protein	
73	 59.52       80892..81884    	 -	330	17933998	-	Atu0079	-	pfkB family carbohydrate kinase	
74	 61.27       82362..83306    	 +	314	17933999	-	Atu0080	-	permease	
75	 61.36       83313..84329    	 -	338	17934000	rsmC	Atu0081	-	ribosomal RNA small subunit methyltransferase	
76	 59.71       84465..86606    	 -	713	17934001	pnpA	Atu0082	-	polyribonucleotide nucleotidyltransferase	
77	 55.86 -1    86610..86831    	 +	73	17934002	-	Atu0083	-	hypothetical protein	
78	 57.04       86872..87141    	 -	89	17934003	rpsO	Atu0084	-	30S ribosomal protein S15	
79	 61.29       87307..88254    	 -	315	17934004	truB	Atu0085	-	tRNA pseudouridine 55 synthase	
80	 58.51       88258..88674    	 -	138	17934005	rbfA	Atu0086	-	ribosome-binding factor A	
81	 63.24 +1    88750..91491    	 -	913	17934006	infB	Atu0087	-	translation initiation factor IF-2	
82	 63.25 +1    91594..92295    	 -	233	17934007	-	Atu0088	-	conserved hypothetical protein	
83	 60.17       92292..93908    	 -	538	17934008	nusA	Atu0089	-	N-utilization substance protein A	
84	 57.12       93972..94568    	 -	198	17934009	-	Atu0090	-	conserved hypothetical protein	
85	 61.82       94857..96485    	 +	542	17934010	-	Atu0091	-	MFS permease	
86	 59.16       96508..97773    	 -	421	17934011	mltB	Atu0092	-	lytic murein transglycosylase	
87	 61.39       97808..98413    	 -	201	17934012	recR	Atu0093	-	Recombination protein	
88	 58.55       98397..99086    	 +	229	17934013	-	Atu0094	-	conserved hypothetical protein	
89	 57.72       99146..99469    	 -	107	17934014	-	Atu0095	-	conserved hypothetical protein	
90	 62.99 +1    99494..101368   	 -	624	17934015	-	Atu0096	-	DNA polymerase III, tau subunit	
91	 56.57      101514..102038   	 +	174	17934016	-	Atu0097	-	conserved hypothetical protein	
92	 59.61      102038..103000   	 +	320	17934017	-	Atu0098	-	mutT/nudix family protein	
93	 57.99      103016..103822   	 -	268	17934018	pheA	Atu0099	-	prephenate dehydratase	
94	 58.99      103891..104646   	 -	251	17934019	kdsB	Atu0100	-	3-deoxy-manno-octulosonate cytidylyltransferase	
95	 57.17      104797..105375   	 +	192	17934020	cycM	Atu0101	-	cytochrome c	
96	 57.02      105470..106195   	 -	241	17934021	pssA	Atu0102	-	exopolysaccharide production protein	
97	 62.22      106484..108778   	 -	764	17934022	pbpC	Atu0103	-	penicillin-binding protein	
98	 57.30      108895..109353   	 -	152	17934023	-	Atu0104	-	conserved hypothetical protein	
99	 49.74 -2   109363..109557   	 -	64	17934024	-	Atu0105	-	hypothetical protein	
100	 59.05      109823..110032   	 +	69	17934025	cspA	Atu0106	-	cold shock protein	

 
 59.40 MEAN 
 
 3.37  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.