IslandPathversion 1.0

IslandPath Analysis: Agrobacterium tumefaciens C58 Cereon Linear



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 3.32
linear chromosome, complete sequence - 0..2074782
1833 proteins
Pos	 %G+C  SD      Location		Strand	Length	PID		Gene	Synonym		Code	Product
1	 55.31 -1        8..412      	 +	134	15158254	-	AGR_L_1		-	AGR_L_1p
2	 51.91 -2      606..1208     	 +	200	15158255	-	AGR_L_4		J	AGR_L_4p
3	 49.51 -2     1299..1706     	 -	135	15158256	-	AGR_L_5		G	AGR_L_5p
4	 59.13        2101..3693     	 -	530	15158257	-	AGR_L_6		-	AGR_L_6p
5	 51.90 -2     3890..4600     	 -	236	15158258	-	AGR_L_7		-	AGR_L_7p
6	 54.98 -1     4597..7095     	 -	832	15158259	-	AGR_L_8		L	AGR_L_8p
7	 58.23        7099..7347     	 +	82	15158260	-	AGR_L_9		L	AGR_L_9p
8	 60.36        7344..8168     	 +	274	15158261	-	AGR_L_10	L	AGR_L_10p hypothetical protein 2 - Agrobacterium tumefaciens insertion sequence IS426
9	 54.85 -1     8165..8968     	 -	267	15158262	-	AGR_L_11	-	AGR_L_11p
10	 57.73        9039..9329     	 -	96	15158263	-	AGR_L_12	-	AGR_L_12p
11	 54.94 -1     9547..9708     	 +	53	15158264	-	AGR_L_13	-	AGR_L_13p
12	 50.39 -2     9855..10112    	 -	85	15158265	-	AGR_L_16	-	AGR_L_16p
13	 47.47 -2    10109..10306    	 -	65	15158266	-	AGR_L_17	-	AGR_L_17p
14	 50.00 -2    10401..10592    	 -	63	15158269	-	AGR_L_18	-	AGR_L_18p
15	 61.88       10589..11257    	 -	222	15158270	-	AGR_L_19	-	AGR_L_19p
16	 56.31       11231..11452    	 +	73	15158271	-	AGR_L_20	-	AGR_L_20p
17	 62.84 +1    11424..11606    	 -	60	15158272	-	AGR_L_21	-	AGR_L_21p
18	 50.79 -2    11893..12081    	 -	62	15158273	-	AGR_L_22	-	AGR_L_22p
19	 57.14       12124..12291    	 +	55	15158274	-	AGR_L_23	G	AGR_L_23p
20	 54.72 -1    12468..13430    	 -	320	15158275	-	AGR_L_24	K	AGR_L_24p
21	 50.00 -2    13408..13689    	 -	93	15158276	-	AGR_L_25	-	AGR_L_25p
22	 52.90 -1    13742..14206    	 +	154	15158277	-	AGR_L_26	-	AGR_L_26p
23	 50.72 -2    14426..14839    	 -	137	15158278	-	AGR_L_27	-	AGR_L_27p
24	 55.87 -1    14881..15630    	 -	249	15158279	-	AGR_L_28	Q	AGR_L_28p
25	 58.10       15782..16843    	 -	353	15158280	-	AGR_L_29	C	AGR_L_29p
26	 54.63 -1    16999..17613    	 -	204	15158281	-	AGR_L_30	R	AGR_L_30p
27	 53.33 -1    17806..18240    	 -	144	15158282	-	AGR_L_31	-	AGR_L_31p
28	 52.36 -2    18296..18868    	 +	190	15158283	-	AGR_L_32	K	AGR_L_32p
29	 55.00 -1    18995..19894    	 -	299	15158284	-	AGR_L_33	K	AGR_L_33p
30	 49.48 -2    19883..20074    	 +	63	15158285	-	AGR_L_34	-	AGR_L_34p
31	 57.92       20090..21049    	 +	319	15158286	-	AGR_L_35	C	AGR_L_35p
32	 58.39       21066..21488    	 -	140	15158287	-	AGR_L_36	K	AGR_L_36p
33	 59.57       21684..22754    	 +	356	15158290	-	AGR_L_37	C	AGR_L_37p
34	 59.03       22759..23295    	 +	178	15158291	-	AGR_L_39	-	AGR_L_39p
35	 54.58 -1    23437..23676    	 +	79	15158292	-	AGR_L_42	-	AGR_L_42p
36	 55.63 -1    23786..24727    	 +	313	15158293	-	AGR_L_43	Q	AGR_L_43p
37	 55.63 -1    24946..25398    	 -	150	15158294	-	AGR_L_46	K	AGR_L_46p
38	 57.81       25526..25717    	 +	63	15158295	-	AGR_L_47	R	AGR_L_47p
39	 62.06       25797..27293    	 +	498	15158296	-	AGR_L_49	-	AGR_L_49p
40	 59.68       27290..28048    	 +	252	15158297	-	AGR_L_50	L	AGR_L_50p
41	 55.56 -1    28614..29594    	 -	326	15158298	-	AGR_L_53	R	AGR_L_53p
42	 59.03       30017..31090    	 +	357	15158299	-	AGR_L_56	-	AGR_L_56p
43	 57.72       31437..33101    	 -	554	15158300	-	AGR_L_58	N	AGR_L_58p
44	 58.04       33098..33433    	 -	111	15158301	-	AGR_L_60	-	AGR_L_60p
45	 53.55 -1    33593..34690    	 -	365	15158304	-	AGR_L_62	R	AGR_L_62p
46	 53.45 -1    34701..34874    	 -	57	15158305	-	AGR_L_63	-	AGR_L_63p
47	 60.12       35123..38956    	 +	1277	15158306	-	AGR_L_66	L	AGR_L_66p
48	 56.37       38978..39181    	 -	67	15158307	-	AGR_L_67	-	AGR_L_67p
49	 54.11 -1    39694..40386    	 +	230	15158308	-	AGR_L_69	-	AGR_L_69p
50	 41.44 -2    40554..41096    	 +	180	15158309	-	AGR_L_70	-	AGR_L_70p
51	 61.92       41131..42015    	 -	294	15158310	-	AGR_L_71	C	AGR_L_71p
52	 63.00 +1    41987..42559    	 -	190	15158311	-	AGR_L_72	-	AGR_L_72p
53	 26.79 -2    42618..42785    	 +	55	15158312	-	AGR_L_73	-	AGR_L_73p
54	 58.87       43028..45424    	 -	798	15158315	-	AGR_L_75	C	AGR_L_75p
55	 61.37       45436..46473    	 -	345	15158316	-	AGR_L_76	F	AGR_L_76p
56	 59.42       46415..47353    	 -	312	15158317	-	AGR_L_78	G	AGR_L_78p
57	 57.14       47378..48490    	 -	370	15158318	-	AGR_L_80	-	AGR_L_80p
58	 57.93       48465..49505    	 -	346	15158319	-	AGR_L_81	G	AGR_L_81p
59	 55.21 -1    49478..50455    	 -	325	15158320	-	AGR_L_83	G	AGR_L_83p
60	 58.01       50469..52085    	 -	538	15158321	-	AGR_L_85	G	AGR_L_85p
61	 56.61       52040..53182    	 -	380	15158322	-	AGR_L_86	G	AGR_L_86p
62	 54.10 -1    53424..54155    	 +	243	15158325	-	AGR_L_88	K	AGR_L_88p
63	 54.90 -1    54186..54389    	 +	67	15158326	-	AGR_L_89	-	AGR_L_89p
64	 59.51       54879..55577    	 -	232	15158327	-	AGR_L_91	Q	AGR_L_91p
65	 54.80 -1    55597..56127    	 -	176	15158328	-	AGR_L_93	M	AGR_L_93p
66	 55.20 -1    56154..56711    	 -	185	15158329	-	AGR_L_94	-	AGR_L_94p
67	 57.23       56828..57505    	 -	225	15158330	-	AGR_L_95	K	AGR_L_95p
68	 60.17       57538..58923    	 -	461	15158331	-	AGR_L_98	G	AGR_L_98p
69	 61.59       58920..59924    	 -	334	15158332	-	AGR_L_99	G	AGR_L_99p
70	 60.48       59962..62289    	 -	775	15158333	-	AGR_L_102	S	AGR_L_102p
71	 56.94       63407..63889    	 +	160	15158336	-	AGR_L_107	-	AGR_L_107p
72	 61.78       63886..64581    	 +	231	15158337	-	AGR_L_108	-	AGR_L_108p
73	 58.56       64610..64831    	 -	73	15158338	-	AGR_L_109	L	AGR_L_109p Hypothetical protein (similarity to integrase)
74	 58.28       65658..67553    	 +	631	15158339	-	AGR_L_113	S	AGR_L_113p
75	 57.28       67586..68629    	 +	347	15158340	-	AGR_L_115	G	AGR_L_115p
76	 59.19       68694..69509    	 +	271	15158341	-	AGR_L_117	Q	AGR_L_117p
77	 62.65       69433..70377    	 +	314	15158342	-	AGR_L_119	K	AGR_L_119p
78	 59.83       70374..71543    	 +	389	15158343	-	AGR_L_121	I	AGR_L_121p
79	 59.72       71540..73180    	 +	546	15158344	-	AGR_L_123	I	AGR_L_123p
80	 58.85       73212..73991    	 +	259	15158345	-	AGR_L_126	Q	AGR_L_126p
81	 57.83       73988..74881    	 +	297	15158346	-	AGR_L_127	-	AGR_L_127p
82	 62.13       74920..75294    	 -	124	15158347	-	AGR_L_914GM	-	AGR_L_914GMp
83	 57.52       75314..76111    	 -	265	15158348	-	AGR_L_130	R	AGR_L_130p
84	 58.39       76077..76559    	 +	160	15158349	-	AGR_L_132	K	AGR_L_132p
85	 53.70 -1    76636..76851    	 +	71	15158352	-	AGR_L_133	-	AGR_L_133p
86	 57.69       76998..78200    	 +	400	15158353	-	AGR_L_33GM	M	AGR_L_33GMp
87	 62.15       78197..79480    	 +	427	15158354	-	AGR_L_34GM	M	AGR_L_34GMp
88	 59.10       79477..80652    	 +	391	15158355	-	AGR_L_35GM	M	AGR_L_35GMp
89	 63.55 +1    80616..81224    	 -	202	15158356	-	AGR_L_141	R	AGR_L_141p
90	 56.57       81228..82505    	 -	425	15158357	-	AGR_L_143	G	AGR_L_143p
91	 58.76       82502..83260    	 -	252	15158358	-	AGR_L_144	S	AGR_L_144p
92	 58.70       83208..84425    	 -	405	15158359	-	AGR_L_145	M	AGR_L_145p
93	 57.95       84608..85927    	 -	439	15158360	-	AGR_L_146	-	AGR_L_146p
94	 59.42       85932..87131    	 -	399	15158361	-	AGR_L_147	M	AGR_L_147p
95	 55.96 -1    87402..88634    	 +	410	15158364	-	AGR_L_149	-	AGR_L_149p
96	 60.01       88719..90371    	 +	550	15158365	-	AGR_L_151	R	AGR_L_151p
97	 60.62       90368..91327    	 +	319	15158366	-	AGR_L_153	M	AGR_L_153p
98	 57.53       91361..93769    	 -	802	15158367	-	AGR_L_153gl	T	AGR_L_153glp
99	 52.09 -2    94411..95199    	 +	262	15158368	-	AGR_L_157	T	AGR_L_157p
100	 57.72       95388..96818    	 +	476	15158369	-	AGR_L_159	H	AGR_L_159p
 
 59.39 MEAN 
 
 3.32  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.