IslandPathversion 1.0

IslandPath Analysis: Agrobacterium tumefaciens C58 Cereon Circular



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.44 STD DEV: 3.25
Agrobacterium tumefaciens strain C58 circular chromosome, complete sequence - 0..2841581
2721 proteins
Pos	 %G+C  SD      Location		Strand	Length	PID		Gene	Synonym		Code	Product
1	 57.91           1..822      	 +	273	15154859	-	AGR_C_5142	S	AGR_C_5142p
2	 57.99         797..1453     	 +	218	15154860	-	AGR_C_2		D	AGR_C_2p
3	 57.59        1437..2306     	 +	289	15154861	-	AGR_C_3		E	AGR_C_3p
4	 56.07 -1     2303..2887     	 +	194	15154862	-	AGR_C_5		H	AGR_C_5p
5	 57.65        2908..3606     	 +	232	15154863	-	AGR_C_7		L	AGR_C_7p
6	 57.35        3705..4187     	 -	160	15154864	-	AGR_C_9		N	AGR_C_9p
7	 59.96        4291..4827     	 -	178	15154865	-	AGR_C_11	R	AGR_C_11p
8	 58.23        4968..5666     	 +	232	15154866	-	AGR_C_12	-	AGR_C_12p
9	 60.56        5663..6775     	 +	370	15154867	-	AGR_C_15	M	AGR_C_15p
10	 58.25        6772..7341     	 +	189	15154868	-	AGR_C_17	S	AGR_C_17p
11	 58.74        7338..7703     	 +	121	15154869	-	AGR_C_18	K	AGR_C_18p
12	 60.14        7847..10297    	 +	816	15154870	-	AGR_C_19	L	AGR_C_19p
13	 57.38       10402..11004    	 -	200	15154873	-	AGR_C_21	C	AGR_C_21p
14	 59.79       11133..11975    	 +	280	15154874	-	AGR_C_22	Q	AGR_C_22p
15	 58.63       12077..13333    	 +	418	15154875	-	AGR_C_24	-	AGR_C_24p
16	 58.85       13403..14170    	 +	255	15154876	-	AGR_C_25	R	AGR_C_25p
17	 55.96 -1    14273..14935    	 +	220	15154877	-	AGR_C_26	E	AGR_C_26p
18	 59.09       14904..16157    	 +	417	15154878	-	AGR_C_28	E	AGR_C_28p
19	 58.42       16105..17001    	 +	298	15154879	-	AGR_C_30	E	AGR_C_30p
20	 59.64       17029..17925    	 +	298	15154880	-	AGR_C_32	I	AGR_C_32p
21	 58.04       18048..19391    	 +	447	15154883	-	AGR_C_35	H	AGR_C_35p
22	 56.22       19439..19840    	 -	133	15154884	-	AGR_C_37	O	AGR_C_37p
23	 61.64       19837..23538    	 -	1233	15154885	-	AGR_C_39	L	AGR_C_39p
24	 63.94 +1    23384..26569    	 -	1061	15154886	-	AGR_C_40	L	AGR_C_40p
25	 58.37       26566..27312    	 -	248	15154887	-	AGR_C_42	M	AGR_C_42p
26	 58.20       27318..28829    	 -	503	15154888	-	AGR_C_43	R	AGR_C_43p
27	 59.86       28826..31471    	 -	881	15154889	-	AGR_C_44	T	AGR_C_44p
28	 57.96       31680..33080    	 -	466	15154892	-	AGR_C_46	H	AGR_C_46p
29	 62.32       33209..33484    	 -	91	15154893	-	AGR_C_49	G	AGR_C_49p
30	 55.47 -1    33496..33897    	 -	133	15154894	-	AGR_C_50	G	AGR_C_50p
31	 55.91 -1    34023..34487    	 -	154	15154895	-	AGR_C_51	T	AGR_C_51p
32	 60.64       34477..36267    	 -	596	15154896	-	AGR_C_52	T	AGR_C_52p
33	 58.77       36323..37120    	 -	265	15154897	-	AGR_C_54	T	AGR_C_54p
34	 60.08       37312..38997    	 +	561	15154898	-	AGR_C_56	C	AGR_C_56p
35	 60.72       39089..39559    	 +	156	15154899	-	AGR_C_57	J	AGR_C_57p
36	 57.09       39579..40580    	 -	333	15154900	-	AGR_C_59	H	AGR_C_59p
37	 59.59       40577..40915    	 -	112	15154901	-	AGR_C_60	E	AGR_C_60p
38	 58.94       40916..41692    	 -	258	15154902	-	AGR_C_62	E	AGR_C_62p
39	 59.81       41689..42432    	 -	247	15154903	-	AGR_C_63	E	AGR_C_63p
40	 60.96       42434..43099    	 -	221	15154904	-	AGR_C_64	E	AGR_C_64p
41	 57.17       43086..43580    	 -	164	15154905	-	AGR_C_67	-	AGR_C_67p
42	 58.29       43603..44247    	 -	214	15154906	-	AGR_C_69	E	AGR_C_69p
43	 59.17       44271..44924    	 +	217	15154907	-	AGR_C_70	O	AGR_C_70p
44	 59.25       45012..46319    	 +	435	15154910	-	AGR_C_72	O	AGR_C_72p
45	 57.04       46514..47479    	 +	321	15154911	-	AGR_C_75	-	AGR_C_75p
46	 59.42       47534..49768    	 +	744	15154912	-	AGR_C_78	C	AGR_C_78p
47	 59.29       49949..50734    	 -	261	15154913	-	AGR_C_80	S	AGR_C_80p
48	 53.82 -1    50756..51331    	 +	191	15154914	-	AGR_C_81	-	AGR_C_81p
49	 60.20       51392..51979    	 -	195	15154915	-	AGR_C_82	T	AGR_C_82p
50	 61.27       52053..53498    	 -	481	15154916	-	AGR_C_85	T	AGR_C_85p
51	 62.82 +1    53390..55990    	 -	866	15154917	-	AGR_C_86	L	AGR_C_86p
52	 55.62 -1    58498..59040    	 -	180	15154920	-	AGR_C_88	-	AGR_C_88p
53	 47.57 -2    59037..59570    	 -	177	15154921	-	AGR_C_89	-	AGR_C_89p
54	 52.71 -2    62034..62291    	 +	85	15154922	-	AGR_C_90	-	AGR_C_90p
55	 54.81 -1    62714..62983    	 -	89	15154923	-	AGR_C_91	-	AGR_C_91p
56	 58.65       62995..64803    	 +	602	15154924	-	AGR_C_92	L	AGR_C_92p
57	 57.42       64853..66085    	 -	410	15154925	-	AGR_C_93	K	AGR_C_93p
58	 59.04       66350..67372    	 +	340	15154926	-	AGR_C_94	G	AGR_C_94p
59	 56.91       67573..68679    	 +	368	15154929	-	AGR_C_96	G	AGR_C_96p
60	 59.26       68679..69461    	 +	260	15154930	-	AGR_C_98	G	AGR_C_98p
61	 59.21       69458..70087    	 +	209	15154931	-	AGR_C_100	H	AGR_C_100p
62	 57.94       70722..70973    	 +	83	15154932	-	AGR_C_102	O	AGR_C_102p
63	 56.64       70987..71385    	 +	132	15154933	-	AGR_C_104	F	AGR_C_104p
64	 55.24 -1    71373..73559    	 +	728	15154934	-	AGR_C_106	F	AGR_C_106p
65	 56.46       73561..74550    	 +	329	15154935	-	AGR_C_107	F	AGR_C_107p
66	 58.01       74580..75815    	 -	411	15154936	-	AGR_C_108	-	AGR_C_108p
67	 61.45       75841..76971    	 +	376	15154937	-	AGR_C_109	L	AGR_C_109p
68	 60.49       76898..77755    	 +	285	15154938	-	AGR_C_111	H	AGR_C_111p
69	 57.65       77759..78235    	 +	158	15154939	-	AGR_C_112	-	AGR_C_112p
70	 58.70       78242..78931    	 -	229	15154940	-	AGR_C_113	-	AGR_C_113p
71	 61.49       78980..79984    	 -	334	15154941	-	AGR_C_114	C	AGR_C_114p
72	 47.62 -2    79974..80099    	 +	41	15154942	-	AGR_C_116	-	AGR_C_116p
73	 61.36       80096..80698    	 +	200	15154943	-	AGR_C_117	S	AGR_C_117p
74	 59.42       80691..81683    	 -	330	15154944	-	AGR_C_118	G	AGR_C_118p
75	 42.86 -2    81707..81811    	 +	34	15154945	-	AGR_C_119	-	AGR_C_119p
76	 61.27       82161..83105    	 +	314	15154948	-	AGR_C_121	R	AGR_C_121p
77	 61.28       83112..84113    	 -	333	15154949	-	AGR_C_122	J	AGR_C_122p
78	 59.71       84264..86405    	 -	713	15154950	-	AGR_C_124	J	AGR_C_124p
79	 57.04       86671..86940    	 -	89	15154951	-	AGR_C_126	J	AGR_C_126p
80	 61.29       87106..88053    	 -	315	15154952	-	AGR_C_127	J	AGR_C_127p
81	 58.51       88057..88473    	 -	138	15154953	-	AGR_C_129	J	AGR_C_129p
82	 63.24 +1    88549..91290    	 -	913	15154954	-	AGR_C_131	J	AGR_C_131p
83	 63.25 +1    91393..92094    	 -	233	15154955	-	AGR_C_134	K	AGR_C_134p
84	 60.17       92091..93707    	 -	538	15154956	-	AGR_C_136	K	AGR_C_136p
85	 57.12       93771..94367    	 -	198	15154957	-	AGR_C_138	S	AGR_C_138p
86	 61.82       94656..96284    	 +	542	15154960	-	AGR_C_139	G	AGR_C_139p
87	 59.16       96307..97572    	 -	421	15154961	-	AGR_C_140	M	AGR_C_140p
88	 61.39       97607..98212    	 -	201	15154962	-	AGR_C_142	L	AGR_C_142p
89	 58.55       98196..98885    	 +	229	15154963	-	AGR_C_144	S	AGR_C_144p
90	 57.72       98945..99268    	 -	107	15154964	-	AGR_C_145	S	AGR_C_145p
91	 62.99 +1    99293..101167   	 -	624	15154965	-	AGR_C_147	L	AGR_C_147p
92	 56.57      101313..101837   	 +	174	15154966	-	AGR_C_148	F	AGR_C_148p
93	 59.61      101837..102799   	 +	320	15154967	-	AGR_C_150	L	AGR_C_150p
94	 57.29      102815..103678   	 -	287	15154968	-	AGR_C_151	E	AGR_C_151p
95	 58.99      103690..104445   	 -	251	15154969	-	AGR_C_152	M	AGR_C_152p
96	 57.17      104596..105174   	 +	192	15154972	-	AGR_C_155	C	AGR_C_155p
97	 55.73 -1   105269..106027   	 -	252	15154973	-	AGR_C_157	M	AGR_C_157p
98	 62.22      106283..108577   	 -	764	15154974	-	AGR_C_158	M	AGR_C_158p
99	 57.30      108694..109152   	 -	152	15154975	-	AGR_C_159	S	AGR_C_159p
100	 53.86 -1   109340..109831   	 +	163	15154976	-	AGR_C_161	K	AGR_C_161p
 
 59.44 MEAN 
 
 3.25  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.