IslandPathversion 1.0

IslandPath Analysis: Archaeoglobus fulgidus DSM4304



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.73 STD DEV: 3.95
Archaeoglobus fulgidus, complete genome - 0..2178400
2420 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 42.78 -1      406..786      	 -	126	11497622	-	AF0001	-	hypothetical protein	
2	 41.48 -1     3222..3749     	 -	175	11497623	-	AF0002	-	hypothetical protein	
3	 42.42 -1     4290..4784     	 +	164	11497624	-	AF0003	S	hypothetical protein	
4	 53.04 +1     5051..6811     	 +	586	11497625	-	AF0004	R	RNase L inhibitor	
5	 48.99        6850..7443     	 +	197	11497626	-	AF0005	-	hypothetical protein	
6	 51.50        7548..8180     	 +	210	11497627	mtaC-1	AF0006	E	corrinoid methyltransferase protein (mtaC-1)	
7	 52.79 +1     8181..9434     	 +	417	11497628	-	AF0007	-	hypothetical protein	
8	 52.26        9508..10770    	 +	420	11497629	oxlT-1	AF0008	G	oxalate/formate antiporter (oxlT-1)	
9	 52.27       10730..11611    	 +	293	11497630	mtr	AF0009	H	N5-methyltetrahydromethanopterin:coenzyme M methyltransferase (mtr)	
10	 52.51       11613..13406    	 +	597	11497631	-	AF0010	R	hypothetical protein	
11	 48.75       13406..14125    	 +	239	11497632	mtaC-2	AF0011	E	corrinoid methyltransferase protein (mtaC-2)	
12	 52.68       14126..15376    	 +	416	11497633	-	AF0012	-	hypothetical protein	
13	 53.58 +1    15396..16595    	 +	399	11497634	exuT	AF0013	G	hexuronate transporter (exuT)	
14	 52.17       16691..17104    	 +	137	11497635	-	AF0014	-	hypothetical protein	
15	 54.34 +1    17106..18581    	 +	491	11497636	putP-1	AF0015	E	proline permease (putP-1)	
16	 53.40 +1    18636..19283    	 +	215	11497637	-	AF0016	-	hypothetical protein	
17	 52.47       19287..21272    	 +	661	11497638	hbd-1	AF0017	I	3-hydroxyacyl-CoA dehydrogenase (hbd-1)	
18	 55.53 +1    21295..22470    	 +	391	11497639	acaB-1	AF0018	I	3-ketoacyl-CoA thiolase (acaB-1)	
19	 52.59       22475..22957    	 +	160	11497640	-	AF0019	R	conserved hypothetical protein	
20	 52.97 +1    22960..24222    	 +	420	11497641	caiB-1	AF0020	C	L-carnitine dehydratase (caiB-1)	
21	 49.07       24261..25232    	 +	323	11497642	-	AF0021	T	signal-transducing histidine kinase	
22	 49.28       25221..25496    	 -	91	11497643	-	AF0022	H	hypothetical protein	
23	 54.13 +1    25503..27281    	 -	592	11497644	aor-1	AF0023	C	aldehyde ferredoxin oxidoreductase (aor-1)	
24	 53.08 +1    27284..28534    	 -	416	11497645	-	AF0024	C	alcohol dehydrogenase, iron-containing	
25	 56.09 +1    28539..29720    	 -	393	11497646	cynX	AF0025	G	cyanate transport protein (cynX)	
26	 44.85       30082..30732    	 +	216	11497647	-	AF0026	-	hypothetical protein	
27	 48.87       30788..31096    	 +	102	11497648	-	AF0027	-	conserved hypothetical protein	
28	 50.99       31091..32206    	 -	371	11497649	-	AF0028	R	conserved hypothetical protein	
29	 51.59       32238..32582    	 -	114	11497650	-	AF0029	S	conserved hypothetical protein	
30	 38.67 -2    32924..33073    	 +	49	11497651	-	AF0030	-	hypothetical protein	
31	 52.94 +1    33137..34156    	 +	339	11497652	-	AF0031	S	hypothetical protein	
32	 48.51       34153..34857    	 -	234	11497653	-	AF0032	R	conserved hypothetical protein	
33	 52.85 +1    34894..36297    	 +	467	11497654	acaA-1	AF0033	R	acyl carrier protein synthase (acaA-1)	
34	 54.55 +1    36200..37453    	 +	417	11497655	acaB-2	AF0034	I	3-ketoacyl-CoA thiolase (acaB-2)	
35	 52.22       37450..38349    	 -	299	11497656	-	AF0035	G	mannosephosphate isomerase, putative	
36	 47.93       38739..39389    	 +	216	11497657	pcm-1	AF0036	O	L-isoaspartyl protein carboxyl methyltransferase (pcm-1)	
37	 50.25       39244..40041    	 +	265	11497658	cobS-1	AF0037	H	cobalamin (5'-phosphate) synthase (cobS-1)	
38	 48.62       40111..41196    	 +	361	11497659	-	AF0038	M	conserved hypothetical protein	
39	 47.39       41153..42262    	 +	369	11497660	-	AF0039	M	dolichol-P-glucose synthetase, putative	
40	 46.52       42263..44044    	 +	593	11497661	-	AF0040	R	hypothetical protein	
41	 41.60 -1    44093..44806    	 -	237	11497662	rfbB-1	AF0041	G	polysaccharide ABC transporter, ATP-binding protein (rfbB-1)	
42	 39.22 -2    44803..45567    	 -	254	11497663	rfbA-1	AF0042	M	polysaccharide ABC transporter, permease protein (rfbA-1)	
43	 39.29 -2    45631..46722    	 +	363	11497664	wbaZ-1	AF0043	M	first mannosyl transferase (wbaZ-1)	
44	 44.87       46731..47969    	 +	412	11500013	gmd-1	AF0044m	M	GDP-D-mannose dehydratase (gmd-1)	
45	 41.95 -1    47966..51607    	 +	1213	11497665	mtfA	AF0045	M	mannosyltransferase A (mtfA)	
46	 37.13 -2    51610..53031    	 -	473	11497666	-	AF0046	Q	hypothetical protein	
47	 43.68 -1    53358..53792    	 +	144	11497667	-	AF0047	-	hypothetical protein	
48	 50.72       54242..55483    	 -	413	11497668	-	AF0048	-	hypothetical protein	
49	 51.90       55526..56764    	 -	412	11497669	-	AF0049	S	hypothetical protein	
50	 51.08       56863..58062    	 +	399	11497670	-	AF0050	S	conserved hypothetical protein	
51	 51.26       58049..59158    	 -	369	11497671	dapE-1	AF0051	E	succinyl-diaminopimelate desuccinylase (dapE-1)	
52	 49.90       59291..59767    	 +	158	11497672	-	AF0052	-	hypothetical protein	
53	 51.13       59760..60467    	 -	235	11497673	-	AF0053	M	conserved hypothetical protein	
54	 48.42       60485..60769    	 -	94	11497674	-	AF0054	-	hypothetical protein	
55	 49.37       60772..61170    	 -	132	11497675	-	AF0055	S	conserved hypothetical protein	
56	 48.23       61191..61331    	 -	46	11497676	-	AF0056	K	hypothetical protein	
57	 51.98       61335..61586    	 -	83	11497677	rpl37AE	AF0057	J	LSU ribosomal protein L37AE (rpl37AE)	
58	 48.19       61625..62149    	 -	174	11497678	-	AF0058	J	conserved hypothetical protein	
59	 48.64       62116..62520    	 -	134	11497679	-	AF0059	-	hypothetical protein	
60	 50.00       62618..62899    	 +	93	11497680	-	AF0060	R	hypothetical protein	
61	 47.38       62899..63489    	 +	196	11497681	tmk	AF0061	F	thymidylate kinase (tmk)	
62	 45.34       63463..64353    	 -	296	11497682	-	AF0062	R	conserved hypothetical protein	
63	 43.55 -1    64406..64591    	 -	61	11497683	-	AF0063	-	hypothetical protein	
64	 46.15       64619..65281    	 +	220	11497684	-	AF0064	-	hypothetical protein	
65	 42.51 -1    65075..65488    	 -	137	11497685	-	AF0065	R	conserved hypothetical protein	
66	 43.92 -1    65485..65673    	 -	62	11497686	-	AF0066	K	hypothetical protein	
67	 38.28 -2    65799..66485    	 -	228	11497687	-	AF0067	S	hypothetical protein	
68	 40.57 -2    66497..67450    	 -	317	11497688	-	AF0068	S	conserved hypothetical protein	
69	 39.12 -2    67451..67813    	 -	120	11497689	-	AF0069	-	hypothetical protein	
70	 40.30 -2    67800..68861    	 -	353	11497690	-	AF0070	-	hypothetical protein	
71	 39.34 -2    68830..71109    	 -	759	11497691	-	AF0071	R	ATP-dependent RNA helicase, putative	
72	 46.97       71266..71991    	 -	241	11497692	-	AF0072	S	conserved hypothetical protein	
73	 43.68 -1    73048..73134    	 -	28	11497693	-	AF0073	-	hypothetical protein	
74	 51.00       73396..74295    	 +	299	11497694	birA	AF0074	K	biotin operon repressor/biotin--[acetyl CoA carboxylase] ligase (birA)	
75	 51.05       74322..75563    	 +	413	11497695	-	AF0075	L	conserved hypothetical protein	
76	 53.04 +1    75544..75954    	 +	136	11497696	-	AF0076	C	iron-sulfur cluster binding protein	
77	 52.33       75951..77687    	 +	578	11497697	aor-2	AF0077	C	aldehyde ferredoxin oxidoreductase (aor-2)	
78	 49.39       77684..78424    	 -	246	11497698	-	AF0078	-	hypothetical protein	
79	 50.85       78494..79789    	 +	431	11497699	-	AF0079	S	hypothetical protein	
80	 51.51       79817..80944    	 +	375	11497700	argD-1	AF0080	E	acetylornithine aminotransferase (argD-1)	
81	 48.20       81167..81637    	 -	156	11497701	-	AF0081	-	hypothetical protein	
82	 44.41 -1    81853..82701    	 +	282	11497702	-	AF0082	L	hypothetical protein	
83	 53.23 +1    82710..82895    	 -	61	11497703	-	AF0083	-	hypothetical protein	
84	 48.03       82867..83322    	 -	151	11497704	-	AF0084	-	hypothetical protein	
85	 48.36       83298..83723    	 +	141	11497705	-	AF0085	-	hypothetical protein	
86	 50.07       83680..84414    	 -	244	11497706	nrtB-1	AF0086	P	nitrate ABC transporter, permease protein (nrtB-1)	
87	 49.73       84378..85109    	 -	243	11497707	nrtC-1	AF0087	P	nitrate ABC transporter, ATP-binding protein (nrtC-1)	
88	 50.28       85106..86008    	 -	300	11497708	-	AF0088	P	thiamine biosynthesis protein, putative	
89	 46.72       86366..87994    	 +	542	11497709	fadD-1	AF0089	I	long-chain-fatty-acid--CoA ligase (fadD-1)	
90	 50.45       88042..88923    	 +	293	11497710	-	AF0090	R	dehydrase	
91	 52.00       88920..89894    	 +	324	11497711	hpcE-1	AF0091	Q	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-1)	
92	 52.42       89891..90613    	 -	240	11497712	cysA	AF0092	P	sulfate ABC transporter, ATP-binding protein (cysA)	
93	 50.76       90591..91376    	 -	261	11497713	cysT	AF0093	P	sulfate ABC transporter, permease protein (cysT)	
94	 48.40       91373..92401    	 -	342	11497714	-	AF0094	P	conserved hypothetical protein	
95	 42.20 -1    93028..93354    	 -	108	11497715	-	AF0095	-	hypothetical protein	
96	 50.48       93365..93679    	 -	104	11497716	-	AF0096	-	hypothetical protein	
97	 40.07 -2    93981..94277    	 -	98	11497717	-	AF0097	-	hypothetical protein	
98	 39.81 -2    94327..94650    	 -	107	11497718	-	AF0098	G	hypothetical protein	
99	 41.72 -1    94932..95396    	 -	154	11497719	-	AF0099	R	hypothetical protein	
100	 42.55 -1    95387..95668    	 -	93	11497720	-	AF0100	S	hypothetical protein	

 
 48.73 MEAN 
 
 3.95  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.