IslandPath Analysis: Aeropyrum pernix K1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 56.92   STD DEV: 5.69
Aeropyrum pernix, complete genome - 0..1669695
1840 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 37.74 -2      213..938      	 -	241	14600380	-	APE0001	-	hypothetical protein	
2	 45.13 -2      938..1276     	 -	112	14600381	-	APE0002	K	hypothetical protein	
3	 42.51 -2     1260..2174     	 -	304	14600382	-	APE0004	R	hypothetical protein	
4	 40.80 -2     2261..2836     	 +	191	14600383	-	APE0006	-	hypothetical protein	
5	 50.94 -1     3896..5440     	 +	514	14600384	-	APE0007	-	hypothetical protein	
6	 40.25 -2     5774..6091     	 -	105	14600385	-	APE0009	P	transport protein	
7	 48.05 -1     6213..7829     	 -	538	14600386	-	APE0010	E	hypothetical protein	
8	 50.55 -1     8251..8889     	 +	212	14600387	-	APE0011	G	hypothetical protein	
9	 48.23 -1     8908..9840     	 +	310	14600388	-	APE0012	G	sugar kinase	
10	 55.03        9925..11652    	 +	575	14600389	-	APE0013	E	dihydroxy-acid dehydratase	
11	 44.84 -2    11954..12370    	 +	138	14600390	-	APE0016	-	hypothetical protein	
12	 56.49       12387..13928    	 -	513	14600391	-	APE0017	G	xylulose kinase	
13	 56.12       13925..15346    	 -	473	14600392	-	APE0020	E	hypothetical protein	
14	 51.85       15391..15849    	 -	152	14600393	-	APE0023	-	hypothetical protein	
15	 44.75 -2    16021..16344    	 -	107	14600394	-	APE0024	-	hypothetical protein	
16	 49.52 -1    16416..16835    	 -	139	14600395	-	APE0025	K	hypothetical protein	
17	 48.80 -1    16932..18800    	 +	622	14600396	-	APE0026	G	phosphoenolpyruvate synthase	
18	 50.53 -1    18728..19384    	 +	218	14600397	-	APE0028	G	phosphoenolpyruvate synthase	
19	 47.68 -1    19387..20850    	 +	487	14600398	-	APE0031	G	antibiotic resistance protein	
20	 50.94 -1    20898..22379    	 +	493	14600399	-	APE0033	C	hypothetical protein	
21	 53.35       22554..23912    	 +	452	14600400	-	APE0035	G	hypothetical protein	
22	 49.87 -1    24026..24823    	 +	265	14600401	-	APE0038	G	multiple sugar-binding transport system permease protein	
23	 51.71       24790..25698    	 +	302	14600402	-	APE0040	G	multiple sugar-binding transport system permease protein	
24	 53.93       25667..26812    	 +	381	14600403	-	APE0043	N	multiple sugar-binding transport ATP-binding protein	
25	 52.23       26994..28115    	 +	373	14600404	-	APE0045	P	phosphate-binding periplasmic protein	
26	 53.14       28329..29060    	 +	243	14600405	-	APE0047	P	phosphate transport system permease protein pstC	
27	 51.35       29053..29907    	 +	284	14600406	-	APE0048	P	phosphate transport system permease protein pstA	
28	 50.66 -1    29907..30668    	 +	253	14600407	-	APE0050	P	phosphate transport ATP-binding protein pstB	
29	 50.66 -1    30668..31273    	 +	201	14600408	-	APE0051	P	hypothetical protein	
30	 54.36       31407..31934    	 -	175	14600409	-	APE0052	-	hypothetical protein	
31	 51.59       32017..32898    	 -	293	14600410	-	APE0053	Q	hypothetical protein	
32	 46.04 -1    33058..33600    	 -	180	14600411	-	APE0054	-	hypothetical protein	
33	 49.34 -1    33674..34966    	 -	430	14600412	-	APE0055	P	hypothetical protein	
34	 54.59       35035..35796    	 -	253	14600413	-	APE0056	I	enoyl-CoA hydratase	
35	 48.75 -1    35977..40392    	 +	1471	14600414	-	APE0057	-	hypothetical protein	
36	 46.03 -1    38070..38384    	 -	104	14600415	-	APE0058	-	hypothetical protein	
37	 48.96 -1    38631..39110    	 -	159	14600416	-	APE0059	-	hypothetical protein	
38	 52.91       40402..41106    	 +	234	14600417	-	APE0060	F	hypothetical protein	
39	 55.37       41227..42510    	 +	427	14600418	-	APE0061	N	hypothetical protein	
40	 56.46       42608..44086    	 +	492	14600419	-	APE0063	G	ABC transporter ATP-binding protein	
41	 53.53       44083..45018    	 +	311	14600420	-	APE0065	R	hypothetical protein	
42	 56.74       45022..45867    	 +	281	14600421	-	APE0067	R	hypothetical protein	
43	 50.65 -1    46167..46472    	 -	101	14600422	-	APE0068	-	hypothetical protein	
44	 51.83       46617..47108    	 +	163	14600423	-	APE0069	F	deoxycytidine triphosphate deaminase	
45	 46.06 -1    47135..47731    	 -	198	14600424	-	APE0070	-	hypothetical protein	
46	 49.80 -1    47940..48917    	 -	325	14600425	-	APE0071	R	hypothetical protein	
47	 52.79       49294..50331    	 +	345	14600426	-	APE0072	O	heme exporter protein C	
48	 54.89       50533..52197    	 +	554	14600427	-	APE0073	-	hypothetical protein	
49	 54.30       50631..51083    	 -	150	14600428	-	APE0074	-	hypothetical protein	
50	 56.46       51418..51750    	 -	110	14600429	-	APE0075	-	hypothetical protein	
51	 55.56       52159..53049    	 -	296	14600430	-	APE0076	G	hypothetical protein	
52	 53.49       53276..53791    	 +	171	14600431	-	APE0077	H	molybdopterin biosynthesis mog protein	
53	 53.88       54129..54527    	 +	132	14600432	-	APE0079	E	hypothetical protein	
54	 52.28       54512..56596    	 -	694	14600433	-	APE0080	R	hypothetical protein	
55	 47.69 -1    56575..57744    	 -	389	14600434	-	APE0082	-	hypothetical protein	
56	 47.90 -1    56764..57072    	 +	102	14600435	-	APE0083	-	hypothetical protein	
57	 51.15 -1    57823..58602    	 -	259	14600436	-	APE0084	C	NADH dehydrogenase	
58	 51.78       58607..59338    	 -	243	14600437	-	APE0085	R	hypothetical protein	
59	 47.97 -1    59910..60401    	 +	163	14600438	-	APE0086	O	bacterioferritin comigratory protein	
60	 46.67 -1    60406..60825    	 -	139	14600439	-	APE0087	-	hypothetical protein	
61	 47.03 -1    60963..61838    	 +	291	14600440	-	APE0088	-	hypothetical protein	
62	 49.32 -1    62528..63997    	 +	489	14600441	-	APE0089	R	hypothetical protein	
63	 52.22       64012..65361    	 +	449	14600442	-	APE0091	R	hypothetical protein	
64	 53.04       65371..66471    	 -	366	14602183	-	APE0092m	T	predicted deacetylase	
65	 49.93 -1    66579..67271    	 -	230	14600443	-	APE0093	-	hypothetical protein	
66	 51.00 -1    66642..66992    	 +	116	14600444	-	APE0094	-	hypothetical protein	
67	 45.15 -2    67294..67623    	 +	109	14600445	-	APE0095	-	hypothetical protein	
68	 51.98       67970..68473    	 +	167	14600446	-	APE0096	-	hypothetical protein	
69	 52.05       68480..69136    	 -	218	14600447	-	APE0097	S	hypothetical protein	
70	 50.14 -1    69239..72118    	 -	959	14600448	-	APE0099	L	DNA-directed DNA polymerase (pfu polymerase)	
71	 54.67       72628..74778    	 +	716	14600449	-	APE0101	C	hypothetical protein	
72	 50.21 -1    74775..75254    	 -	159	14600450	-	APE0103	O	hypothetical protein	
73	 54.37       75287..76075    	 -	262	14600451	-	APE0104	R	hypothetical protein	
74	 54.85       76180..76416    	 +	78	14600452	-	APES001	C	ferredoxin	
75	 53.79       76470..77261    	 +	263	14600453	-	APE0105	R	GTP-binding protein	
76	 60.78       77364..77822    	 -	152	14600454	-	APE0106	-	hypothetical protein	
77	 55.21       77777..79417    	 -	546	14600455	-	APE0107	R	hypothetical protein	
78	 57.03       79401..80645    	 -	414	14600456	-	APE0109	S	hypothetical protein	
79	 55.14       80633..83392    	 -	919	14600457	-	APE0110	L	hypothetical protein	
80	 54.39       83399..84628    	 -	409	14600458	-	APE0113	L	hypothetical protein	
81	 48.37 -1    84782..84934    	 -	50	14600459	-	APES002	J	50S ribosomal protein L40	
82	 56.14       85004..86209    	 -	401	14600460	-	APE0115	L	flap endonuclease-1	
83	 51.23       86157..86765    	 +	202	14600461	-	APE0116	S	hypothetical protein	
84	 57.99       87535..88755    	 -	406	14600462	-	APE0117	J	threonyl-tRNA synthetase	
85	 53.23       88998..89957    	 +	319	14600463	-	APE0119	L	radA protein	
86	 58.84       89933..90673    	 +	246	14600464	-	APE0121	N	hypothetical protein	
87	 52.25       90706..91260    	 +	184	14600465	-	APE0122	F	hit-like protein	
88	 54.05       91264..92262    	 +	332	14600466	-	APE0124	R	hypothetical protein	
89	 56.12       92381..93850    	 +	489	14600467	-	APE0125	-	hypothetical protein	
90	 54.12       93837..94856    	 +	339	14600468	-	APE0126	-	hypothetical protein	
91	 54.39       94864..95808    	 +	314	14600469	-	APE0127	R	hypothetical protein	
92	 54.50       95780..96889    	 +	369	14600470	-	APE0129	S	hypothetical protein	
93	 54.85       97001..97999    	 +	332	14600471	-	APE0130	-	hypothetical protein	
94	 54.34       98101..98676    	 -	191	14600472	-	APE0131	-	hypothetical protein	
95	 49.40 -1    98828..99163    	 +	111	14600473	-	APE0132	S	hypothetical protein	
96	 50.79 -1    99329..100084   	 +	251	14600474	-	APE0134	C	electron transfer flavoprotein beta subunit	
97	 50.70 -1   100104..101030   	 +	308	14600475	-	APE0135	C	electron transfer flavoprotein alpha subunit	
98	 49.56 -1   101117..102256   	 +	379	14600476	-	APE0136	-	hypothetical protein	
99	 59.87      102380..103879   	 +	499	14600477	-	APE0137	E	gamma-glutamyltranspeptidase	
100	 50.14 -1   104096..104827   	 +	243	14600478	-	APE0140	T	hypothetical protein	

 
 56.92 MEAN 
 
 5.69  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.