IslandPathversion 1.0

IslandPath Analysis: Yersinia pseudotuberculosis IP32953 chromosome



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.01 STD DEV: 4.97
Yersinia pseudotuberculosis IP 32953, complete genome - 0..4744671
3901 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 42.86      270..710      	 -	146	51594360	-	YPTB0001	-	putative flavoprotein	
2	 41.56 -1      803..1264     	 -	153	51594361	asnC	YPTB0002	-	transcriptional regulator	
3	 45.52        1434..2426     	 +	330	51594362	asnA	YPTB0003	-	aspartate-ammonia ligase	
4	 47.72        2525..3991     	 -	488	51594363	-	YPTB0004	-	hypothetical protein	
5	 46.85        3995..5533     	 -	512	51594364	-	YPTB0005	-	hypothetical protein	
6	 46.01        5807..7675     	 +	622	51594365	kup	YPTB0006	-	potassium transport protein	
7	 48.10        7880..8299     	 +	139	51594366	-	YPTB0007	-	ribose permease	
8	 50.05        8350..9276     	 +	308	51594367	-	YPTB0008	-	ribokinase	
9	 49.71        9329..9499     	 +	56	51594368	-	YPTB0009	-	hypothetical protein	
10	 46.53        9496..10920    	 -	474	51594369	-	YPTB0010	-	MFS multidrug:H+ antiporter	
11	 44.06       11000..11689    	 -	229	51594370	-	YPTB0011	-	GntR-famly transcriptional regulator	
12	 49.49       17956..19143    	 +	395	51594371	-	YPTB0012	-	putative transposase	
13	 40.68 -1    19223..19753    	 -	176	51594372	mobB	YPTB0013	-	molybdopterin-guanine dinucleotide biosynthesis protein B	
14	 41.11 -1    20495..20764    	 +	89	51594373	-	YPTB0015	-	hypothetical protein	
15	 46.50       20855..21841    	 +	328	51594374	-	YPTB0016	-	hypothetical protein	
16	 42.15 -1    21869..22492    	 +	207	51594375	dsbA	YPTB0017	-	secreted thiol:disulfide interchange protein DsbA	
17	 47.45       22983..25781    	 +	932	51594376	polA	YPTB0018	-	DNA polymerase A	
18	 46.85       26189..26839    	 -	216	51594377	-	YPTB0019	-	hypothetical protein	
19	 48.50       27604..28170    	 +	188	51594378	-	YPTB0020	-	hypothetical protein	
20	 47.74       28357..29730    	 +	457	51594379	hemN	YPTB0021	-	oxygen-independent coproporphyrinogen III oxidase	
21	 52.72       29784..31196    	 -	470	51594380	ntrC	YPTB0022	-	nitrogen regulation protein	
22	 49.24       31204..32253    	 -	349	51594381	ntrB	YPTB0023	-	Two component regulatory, involved in nitrogen assimilation	
23	 50.71       32506..33915    	 -	469	51594382	glnA	YPTB0024	-	glutamine synthetase	
24	 49.01       34478..36301    	 +	607	51594383	bipA	YPTB0025	-	putative GTPase	
25	 44.16       36623..37213    	 +	196	51594384	-	YPTB0026	-	hypothetical protein	
26	 47.80       37310..38194    	 +	294	51594385	rbn	YPTB0027	-	ribonuclease BN	
27	 48.86       38201..38638    	 +	145	51594386	-	YPTB0028	-	hypothetical protein	
28	 50.87       38824..39747    	 +	307	51594387	-	YPTB0029	-	conserved membrane protein	
29	 48.25       39882..41591    	 -	569	51594388	-	YPTB0030	-	possible exported protein	
30	 50.72       41738..43123    	 -	461	51594389	-	YPTB0031	-	NCS2 family xanthine/uracil:H+ symporter	
31	 50.21       43361..44575    	 +	404	51594390	gltS	YPTB0032	-	sodium/glutamate symport carrier protein	
32	 51.63       44941..47022    	 -	693	51594391	recG	YPTB0033	-	ATP-dependent DNA helicase	
33	 49.64       47023..47715    	 -	230	51594392	trmH	YPTB0034	-	tRNA (guanosine-2'-O-)-methyltransferase	
34	 48.98       47721..49829    	 -	702	51594393	spoT	YPTB0035	-	guanosine-3',5'-bisbis(diphosphate) 3'-pyrophosphydrolase	
35	 51.45       49849..50124    	 -	91	51594394	rpoZ	YPTB0036	-	DNA-directed RNA polymerase, omega chain	
36	 46.47       50179..50802    	 -	207	51594395	gmk	YPTB0037	-	guanylate kinase	
37	 48.24       51203..52906    	 +	567	51594396	-	YPTB0038	-	putative DNA ligase	
38	 47.57       52926..53543    	 -	205	51594397	-	YPTB0039	-	putative membrane protein	
39	 48.26       54064..54927    	 -	287	51594398	-	YPTB0040	-	hypothetical protein	
40	 51.32       55054..55770    	 +	238	51594399	rph	YPTB0041	-	ribonuclease PH	
41	 50.46       55937..56584    	 +	215	51594400	pyrE	YPTB0042	-	orotate phosphoribosyltransferase	
42	 47.91       56719..57315    	 -	198	51594401	ttk	YPTB0043	-	TetR-family regulatory protein	
43	 48.90       57437..57892    	 -	151	51594402	dut	YPTB0044	-	deoxyuridine 5'-triphosphate nucleotidohydrolase	
44	 48.11       57873..59090    	 -	405	51594403	dfp	YPTB0045	-	DNA/pantothenate metabolism flavoprotein	
45	 45.44       59284..59952    	 +	222	51594404	radC	YPTB0046	-	putative DNA repair protein	
46	 50.63       60215..60451    	 +	78	51594405	rpmB	YPTB0047	-	50S ribosomal protein L28	
47	 39.29 -1    60463..60630    	 +	55	51594406	rpmG	YPTB0048	-	50S ribosomal protein L33	
48	 48.89       60713..61522    	 +	269	51594407	mutM	YPTB0049	-	formamidopyrimidine-DNA glycosylase	
49	 46.25       61528..62007    	 -	159	51594408	coaA	YPTB0050	-	phosphopantetheine adenylyltransferase	
50	 46.74       62004..62786    	 -	260	51594409	kdtX	YPTB0051	-	lipopolysaccharide core biosynthesis glycosyl transferase	
51	 50.39       62787..64064    	 -	425	51594410	kdtA	YPTB0052	-	3-deoxy-D-manno-octulosonic-acid transferase	
52	 50.62       64484..65449    	 -	321	51594411	rfaC	YPTB0053	-	lipopolysaccharide heptosyltransferase-1	
53	 51.83       65449..66513    	 -	354	51594412	rfaF	YPTB0054	-	ADP-heptose--LPS heptosyltransferase II	
54	 45.12       66544..67476    	 -	310	51594413	rfaD	YPTB0055	-	ADP-L-glycero-D-manno-heptose-6-epimerase	
55	 50.08       67722..68933    	 +	403	51594414	kbl	YPTB0056	-	2-amino-3-ketobutyrate coenzyme A ligase	
56	 47.86       68943..69968    	 +	341	51594415	tdh	YPTB0057	-	threonine 3-dehydrogenase	
57	 49.26       70106..71116    	 -	336	51594416	yibQ	YPTB0058	-	hypothetical protein	
58	 50.18       71140..72492    	 -	450	51594417	-	YPTB0059	-	putative membrane protein	
59	 50.26       72520..74067    	 -	515	51594418	-	YPTB0060	-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	
60	 45.52       74465..74899    	 +	144	51594419	-	YPTB0061	-	putative membrane protein	
61	 51.41       75018..75266    	 +	82	51594420	grxC	YPTB0062	-	glutaredoxin	
62	 48.43       75354..75830    	 +	158	51594421	secB	YPTB0063	-	protein-export protein	
63	 51.57       75830..76849    	 +	339	51594422	gpsA	YPTB0064	-	glycerol-3-phosphate dehydrogenase	
64	 46.10       76909..77049    	 +	46	51594423	-	YPTB0065	-	hypothetical protein	
65	 49.76       77115..77936    	 +	273	51594424	cysE	YPTB0066	-	serine acetyltransferase	
66	 49.08       78059..78547    	 -	162	51594425	-	YPTB0067	-	putative methyltransferase	
67	 52.21       78736..79800    	 +	354	51594426	-	YPTB0068	-	bifunctional regulatory protein/DNA repair protein	
68	 49.82       79868..81244    	 -	458	51594427	cpxA	YPTB0069	-	two component sensor kinase	
69	 49.93       81241..81939    	 -	232	51594428	cpxR	YPTB0070	-	two component system response regulatory protein	
70	 46.42       82113..82601    	 +	162	51594429	cpxP	YPTB0071	-	putative exported protein	
71	 51.04       83279..84238    	 +	319	51594430	-	YPTB0072	-	hypothetical protein	
72	 48.62       84800..85702    	 +	300	51594431	-	YPTB0073	-	putative Co/Zn/Cd cation transporters, CDF family	
73	 47.66       85920..86903    	 +	327	51594432	pfkA	YPTB0074	-	6-phosphofructokinase	
74	 45.66       87124..88113    	 +	329	51594433	sbp1	YPTB0075	-	ABC type periplasmic sulfate-binding protein	
75	 48.91       88363..89139    	 -	258	51594434	-	YPTB0076	-	possible ABC transporter, periplasmic molybdate binding protein	
76	 44.61       89257..90684    	 -	475	51594435	-	YPTB0077	-	putative DASS family 2-oxoglutarate/malate:Na+ antiporter	
77	 54.06 +1    90750..91463    	 -	237	51594436	-	YPTB0078	-	possible transferase	
78	 51.63       91460..92197    	 -	245	51594437	-	YPTB0079	-	hypothetical protein	
79	 50.73       92334..93569    	 +	411	51594438	-	YPTB0080	-	possible transcriptional regulator	
80	 48.83       93800..94567    	 -	255	51594439	tpiA	YPTB0081	-	triosephosphate isomerase	
81	 44.81       94696..95331    	 -	211	51594440	-	YPTB0082	-	putative exported protein	
82	 51.95       95479..95913    	 +	144	51594441	-	YPTB0083	-	conserved membrane protein	
83	 52.07       96254..97000    	 -	248	51594442	fpr	YPTB0084	-	ferredoxin--NADP reductase	
84	 52.42       97155..98165    	 -	336	51594443	glpX	YPTB0085	-	glpX protein	
85	 51.97       98418..99941    	 -	507	51594444	glpK	YPTB0086	-	glycerol kinase	
86	 50.88      100118..100966   	 -	282	51594445	glpF	YPTB0087	-	MIP family glycerol uptake facilitator protein GlpF	
87	 39.17 -1   100976..101215   	 -	79	51594446	-	YPTB0088	-	hypothetical protein	
88	 42.92 -1   101610..101849   	 +	79	51594447	-	YPTB0089	-	hypothetical protein	
89	 43.83      102190..104304   	 -	704	51594448	-	YPTB0090	-	ABC transporter, multidrug efflux pump, fused permease and ATPase domains	
90	 39.21 -1   104297..105589   	 -	430	51594449	-	YPTB0091	-	HlyD family (ABC transporter associated) multidrug efflux pump	
91	 45.83      105802..106041   	 +	79	51594450	-	YPTB0092	-	hypothetical protein	
92	 29.33 -2   106216..106365   	 +	49	51594451	-	YPTB0093	-	hypothetical protein	
93	 53.16 +1   106671..107255   	 +	194	51594452	-	YPTB0094	-	putative exported protein	
94	 47.53      107372..107857   	 -	161	51594453	menG	YPTB0095	-	S-adenosylmethionine:2-demethylmenaquinone methyltransferase	
95	 48.91      107999..108916   	 -	305	51594454	menA	YPTB0096	-	4-dihydroxy-2-naphthoate octaprenyltransferase	
96	 49.17      109151..110482   	 -	443	51594455	hslU	YPTB0097	-	ATP-binding heat shock protein	
97	 48.76      110553..111077   	 -	174	51594456	hslV	YPTB0098	-	heat shock protein	
98	 53.07 +1   111177..112022   	 -	281	51594457	ftsN	YPTB0099	-	cell division protein	
99	 48.66      112088..113092   	 -	334	51594458	cytR	YPTB0100	-	LacI family transcriptional repressor, CytR	
100	 52.93      113469..115667   	 -	732	51594459	priA	YPTB0101	-	primosomal protein n	

 
 48.01 MEAN 
 
 4.97  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.