IslandPath Analysis: Yersinia pestis biovar Mediaevails



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.77   STD DEV: 5.00
Yersinia pestis biovar Medievalis str. 91001, complete genome - 0..4595065
3895 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 42.86       21..461      	 -	146	45439866	fldA1	YP0001	-	putative flavoprotein	
2	 41.56 -1      554..1015     	 -	153	45439867	asnC	YP0002	-	regulatory protein	
3	 45.52        1185..2177     	 +	330	45439868	asnA	YP0003	-	aspartate-ammonia ligase	
4	 47.72        2276..3742     	 -	488	45439869	-	YP0004	-	conserved hypothetical protein	
5	 46.40        3746..5314     	 -	522	45439870	-	YP0005	-	MoxR-like ATPases	
6	 45.80        5588..7456     	 +	622	45439871	kup	YP0006	-	potassium transport protein	
7	 48.10        7661..8080     	 +	139	45439872	rbsD1	YP0007	-	ribose permease	
8	 50.05        8131..9057     	 +	308	45439873	rbsK1	YP0008	-	ribokinase	
9	 51.47        9077..9280     	 +	67	45439874	purR1	YP0009	-	Transcriptional regulators	
10	 46.46        9277..10701    	 -	474	45439875	proP1	YP0010	-	putative membrane transport protein	
11	 44.06       10781..11470    	 -	229	45439876	fadR1	YP0011	-	putative GntR-famly transcriptional regulator	
12	 49.63       17690..18898    	 +	402	45439877	-	YP0012	-	transposase for the IS285 insertion element	
13	 40.86 -1    18956..19513    	 -	185	45439878	mobB	YP0013	-	probable molybdopterin-guanine dinucleotide biosynthesis protein B	
14	 43.15       19486..20127    	 -	213	45439879	mobA	YP0014	-	molybdopterin-guanine dinucleotide biosynthesis protein A	
15	 41.11 -1    20227..20496    	 +	89	45439880	-	YP0015	-	conserved hypothetical protein	
16	 46.50       20587..21573    	 +	328	45439881	-	YP0016	-	Putative homoserine kinase type II (protein kinase fold)	
17	 42.15 -1    21601..22224    	 +	207	45439882	dsbA	YP0017	-	secreted thiol:disulfide interchange protein DsbA	
18	 47.48       22716..25514    	 +	932	45439883	polA	YP0018	-	DNA polymerase I	
19	 45.88       25872..26381    	 +	169	45439884	tnp_1	YP0019	-	transposase for the IS1541 insertion element	
20	 46.54       26633..27283    	 -	216	45439885	-	YP0020	-	Predicted GTPases	
21	 48.50       28028..28594    	 +	188	45439886	-	YP0021	-	conserved hypothetical protein	
22	 47.75       28771..30150    	 +	459	45439887	hemN1	YP0022	-	oxygen-independent coproporphyrinogen III oxidase	
23	 52.36       30204..31685    	 -	493	45439888	ntrC	YP0023	-	nitrogen regulation protein	
24	 49.26       31624..32703    	 -	359	45439889	ntrB	YP0024	-	Two component regulatory protein involved in nitrogen assimilation	
25	 50.78       32926..34335    	 -	469	45439890	glnA	YP0025	-	glutamine synthetase	
26	 42.77       34521..34679    	 -	52	45439891	-	YP0026	-	possible membrane protein	
27	 49.01       34897..36720    	 +	607	45439892	bipA	YP0027	-	putative GTPase	
28	 44.16       37042..37632    	 +	196	45439893	-	YP0028	-	Predicted hydrolases of the HAD superfamily	
29	 48.36       37669..38613    	 +	314	45439894	rbn1	YP0029	-	ribonuclease BN	
30	 48.86       38620..39057    	 +	145	45439895	dtd	YP0030	-	D-Tyr-tRNAtyr deacylase	
31	 50.45       39131..39913    	 -	260	45439896	dnaC_1	YP0031	-	putative IS100 transposase	
32	 52.79 +1    39910..40932    	 -	340	45439897	-	YP0032	-	transposase for insertion sequence IS100	
33	 52.56       41326..42126    	 +	266	45439898	wecD1	YP0033	-	conserved membrane protein	
34	 47.64       42261..43616    	 -	451	45439899	-	YP0034	-	possible exported protein	
35	 50.57       44118..45527    	 -	469	45439900	uraA	YP0035	-	putative membrane permease	
36	 50.04       45741..46955    	 +	404	45439901	gltS	YP0036	-	sodium/glutamate symport carrier protein	
37	 51.59       47321..49402    	 -	693	45439902	recG	YP0037	-	ATP-dependent DNA helicase	
38	 49.64       49403..50095    	 -	230	45439903	trmH	YP0038	-	tRNA (guanosine-2'-O-)-methyltransferase	
39	 48.93       50101..52209    	 -	702	45439904	spoT	YP0039	-	guanosine-3',5'-bisbis(diphosphate) 3'-pyrophosphydrolase	
40	 51.45       52229..52504    	 -	91	45439905	rpoZ	YP0040	-	DNA-directed RNA polymerase, omega chain	
41	 46.47       52559..53182    	 -	207	45439906	gmk	YP0041	-	guanylate kinase	
42	 48.12       53583..55286    	 +	567	45439907	lig	YP0042	-	putative DNA ligase	
43	 47.28       55299..55922    	 -	207	45439908	-	YP0043	-	putative membrane protein	
44	 48.50       56325..57188    	 -	287	45439909	-	YP0044	-	Uncharacterized stress-induced protein	
45	 51.32       57315..58031    	 +	238	45439910	rph	YP0045	-	ribonuclease PH	
46	 50.77       58198..58845    	 +	215	45439911	pyrE	YP0046	-	orotate phosphoribosyltransferase	
47	 47.91       58980..59576    	 -	198	45439912	ttk	YP0047	-	TetR-family regulatory protein	
48	 49.04       59698..60168    	 -	156	45439913	dut	YP0048	-	deoxyuridine 5'-triphosphate nucleotidohydrolase	
49	 48.11       60134..61351    	 -	405	45439914	dfp	YP0049	-	DNA/pantothenate metabolism flavoprotein	
50	 45.44       61545..62213    	 +	222	45439915	radC	YP0050	-	putative DNA repair protein	
51	 50.63       62476..62712    	 +	78	45439916	rpmB	YP0051	-	50S ribosomal protein L28	
52	 39.29 -1    62724..62891    	 +	55	45439917	rpmG	YP0052	-	50S ribosomal protein L33	
53	 48.89       62974..63783    	 +	269	45439918	mutM	YP0053	-	formamidopyrimidine-DNA glycosylase	
54	 46.25       63789..64268    	 -	159	45439919	coaD	YP0054	-	phosphopantetheine adenylyltransferase	
55	 46.62       64265..65047    	 -	260	45439920	kdtX	YP0055	-	lipopolysaccharide core biosynthesis glycosyl transferase	
56	 49.64       65048..66433    	 -	461	45439921	kdtA	YP0056	-	3-deoxy-D-manno-octulosonic-acid transferase	
57	 50.71       66745..67734    	 -	329	45439922	rfaC	YP0057	-	lipopolysaccharide heptosyltransferase-1	
58	 51.53       67710..68786    	 -	358	45439923	rfaF	YP0058	-	ADP-heptose--LPS heptosyltransferase II	
59	 45.12       68805..69746    	 -	313	45439924	rfaD	YP0059	-	ADP-L-glycero-D-manno-heptose-6-epimerase	
60	 50.00       69953..71194    	 +	413	45439925	kbl	YP0060	-	2-amino-3-ketobutyrate coenzyme A ligase	
61	 48.15       71204..72229    	 +	341	45439926	tdh1	YP0061	-	threonine 3-dehydrogenase	
62	 49.96       73325..74695    	 -	456	45439927	nlpD1	YP0063	-	putative membrane protein	
63	 50.13       74705..76252    	 -	515	45439928	gpmI	YP0064	-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	
64	 45.06       76649..77083    	 +	144	45439929	pspE1	YP0065	-	putative membrane protein	
65	 51.41       77202..77450    	 +	82	45439930	grxC	YP0066	-	glutaredoxin	
66	 48.43       77538..78014    	 +	158	45439931	secB	YP0067	-	protein-export protein	
67	 51.57       78014..79033    	 +	339	45439932	gpsA	YP0068	-	glycerol-3-phosphate dehydrogenase	
68	 45.39       79093..79233    	 +	46	45439933	-	YP0069	-	hypothetical protein	
69	 49.70       79296..80120    	 +	274	45439934	cysE	YP0070	-	serine acetyltransferase	
70	 49.08       80243..80731    	 -	162	45439935	cspR	YP0071	-	putative methyltransferase	
71	 52.02       80920..81984    	 +	354	45439936	ada	YP0072	-	bifunctional regulatory protein/DNA repair protein	
72	 49.89       82033..83409    	 -	458	45439937	cpxA	YP0073	-	two component sensor kinase	
73	 49.79       83406..84128    	 -	240	45439938	cpxR1	YP0074	-	two component system response regulatory protein	
74	 46.63       84278..84766    	 +	162	45439939	cpxP	YP0075	-	putative exported protein	
75	 46.33       85223..85399    	 +	58	45439940	-	YP0076	-	hypothetical protein	
76	 51.04       85444..86403    	 +	319	45439941	-	YP0077	-	conserved hypothetical protein	
77	 41.46 -1    86471..86593    	 -	40	45439942	-	YP0078	-	putative transposase	
78	 48.50       86965..87867    	 +	300	45439943	mMT11	YP0079	-	putative integral membrane protein	
79	 47.15       88085..89068    	 +	327	45439944	pfkA	YP0080	-	6-phosphofructokinase	
80	 45.55       89256..90278    	 +	340	45439945	sbp	YP0081	-	exported sulfate-binding protein	
81	 48.23       90528..91346    	 -	272	45439946	modA1	YP0082	-	ABC-type molybdate transport system, periplasmic component	
82	 44.61       91422..92849    	 -	475	45439947	citT1	YP0083	-	putative membrane transport protein	
83	 50.45       93209..93991    	 -	260	45439948	dnaC_2	YP0085	-	insertion sequence IS100, ATP-binding protein	
84	 52.79 +1    93988..95010    	 -	340	45439949	-	YP0086	-	transposase for insertion sequence IS100	
85	 49.88       95584..96405    	 -	273	45439950	-	YP0087	-	Uncharacterized proteins, LmbE homologs	
86	 49.23       96398..97693    	 +	431	45439951	lysR1	YP0088	-	possible transcriptional regulator	
87	 48.96       97925..98692    	 -	255	45439952	tpiA	YP0089	-	triosephosphate isomerase	
88	 45.13       98821..99456    	 -	211	45439953	-	YP0090	-	putative exported protein	
89	 50.50       99538..100038   	 +	166	45439954	-	YP0091	-	conserved membrane protein	
90	 51.94      100379..101125   	 -	248	45439955	fpr	YP0092	-	ferredoxin--NADP reductase	
91	 51.21      101280..102398   	 -	372	45439956	glpX	YP0093	-	hypothetical protein	
92	 52.03      102527..104050   	 -	507	45439957	glpK1	YP0094	-	glycerol kinase	
93	 50.88      104227..105075   	 -	282	45439958	glpF	YP0095	-	glycerol uptake facilitator protein	
94	 39.17 -1   105085..105324   	 -	79	45439959	-	YP0096	-	hypothetical protein	
95	 42.92      105687..105926   	 +	79	45439960	-	YP0097	-	conserved hypothetical protein	
96	 45.88      106134..106643   	 -	169	45439961	tnp_2	YP0098	-	transposase for the IS1541 insertion element	
97	 50.72      106769..106975   	 +	68	45439962	-	YP0099	-	hypothetical protein	
98	 43.83      106984..109098   	 -	704	45439963	sunT	YP0100	-	putative secretion ATPase	
99	 39.33 -1   109091..110407   	 -	438	45439964	acrA1	YP0101	-	putative secretion permease	
100	 45.83      110596..110835   	 +	79	45439965	-	YP0102	-	hypothetical protein	

 
 47.77 MEAN 
 
 5.00  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.