IslandPath Analysis: Xanthomonas axonopodis pv. citri str. 306



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.78   STD DEV: 3.84
Xanthomonas axonopodis pv. citri str. 306, complete genome - 0..5175554
4312 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 65.24       42..1370     	 +	442	21240775	dnaA	XAC0001	-	chromosomal replication initiator	
2	 62.49        1647..2747     	 +	366	21240776	dnaN	XAC0002	-	DNA polymerase III beta chain	
3	 65.40        3799..4905     	 +	368	21240777	recF	XAC0003	-	DNA replication and repair RecF protein	
4	 64.95        5020..7464     	 +	814	21240778	gyrB	XAC0004	-	DNA gyrase subunit B	
5	 67.98        7685..8368     	 +	227	21240779	-	XAC0005	-	conserved hypothetical protein	
6	 64.44        8552..9358     	 +	268	21240780	-	XAC0006	-	conserved hypothetical protein	
7	 60.13 -1     9636..10829    	 +	397	21240781	-	XAC0007	-	conserved hypothetical protein	
8	 64.43       10983..11654    	 +	223	21240782	tonB	XAC0008	-	TonB protein	
9	 64.96       11740..12501    	 +	253	21240783	exbB	XAC0009	-	biopolymer transport ExbB protein	
10	 59.57 -1    12548..12970    	 +	140	21240784	exbD1	XAC0010	-	biopolymer transport ExbD1 protein	
11	 59.66 -1    12974..13387    	 +	137	21240785	exbD2	XAC0011	-	biopolymer transport ExbD2 protein	
12	 65.23       13649..14416    	 -	255	21240786	pdxJ	XAC0012	-	pyridoxal phosphate biosynthetic protein	
13	 69.37 +1    14424..14756    	 -	110	21240787	-	XAC0013	-	conserved hypothetical protein	
14	 66.46       14768..16228    	 -	486	21240788	cls	XAC0014	-	cardiolipin synthetase	
15	 54.39 -2    16671..17330    	 +	219	21240789	-	XAC0015	-	hypothetical protein	
16	 56.01 -2    17330..17920    	 +	196	21240790	-	XAC0016	-	hypothetical protein	
17	 65.07       18131..19258    	 -	375	21240791	-	XAC0017	-	conserved hypothetical protein	
18	 63.62       19442..20359    	 -	305	21240792	-	XAC0018	-	conserved hypothetical protein	
19	 67.11       20413..21753    	 -	446	21240793	ompP1	XAC0019	-	outer membrane protein	
20	 67.68       21972..22664    	 +	230	21240794	-	XAC0020	-	conserved hypothetical protein	
21	 60.12 -1    22773..23093    	 +	106	21240795	-	XAC0021	-	conserved hypothetical protein	
22	 69.39 +1    23093..24085    	 +	330	21240796	serA	XAC0022	-	D-3-phosphoglycerate dehydrogenase	
23	 68.50       24251..25777    	 -	508	21240797	ctp	XAC0023	-	carboxyl-terminal protease	
24	 67.56       25882..27117    	 -	411	21240798	-	XAC0024	-	conserved hypothetical protein	
25	 65.14       27278..27934    	 +	218	21240799	-	XAC0025	-	conserved hypothetical protein	
26	 67.06       28096..29892    	 +	598	21240800	-	XAC0026	-	conserved hypothetical protein	
27	 63.74       30212..30655    	 -	147	21240801	-	XAC0027	-	conserved hypothetical protein	
28	 61.90       30948..32081    	 -	377	21240802	egl	XAC0028	-	cellulase	
29	 61.25       32718..33770    	 -	350	21240803	egl	XAC0029	-	cellulase	
30	 63.04       34548..35621    	 -	357	21240804	egl	XAC0030	-	cellulase	
31	 64.78       35929..36987    	 +	352	21240805	yahK	XAC0031	-	alcohol dehydrogenase	
32	 68.15       37522..39003    	 -	493	21240806	gltD	XAC0032	-	glutamate synthase beta subunit	
33	 67.76       39132..43604    	 -	1490	21240807	gltB	XAC0033	-	glutamate synthase alpha subunit	
34	 65.46       43807..44220    	 -	137	21240808	-	XAC0034	-	conserved hypothetical protein	
35	 65.01       44433..45521    	 +	362	21240809	-	XAC0035	-	conserved hypothetical protein	
36	 66.96       45728..46072    	 -	114	21240810	-	XAC0036	-	conserved hypothetical protein	
37	 64.91       46368..47507    	 +	379	21240811	-	XAC0037	-	penicillin acylase	
38	 64.37       47588..48457    	 -	289	21240812	-	XAC0038	-	conserved hypothetical protein	
39	 65.53       48629..49504    	 +	291	21240813	-	XAC0039	-	transcriptional regulator	
40	 66.08       49519..50031    	 -	170	21240814	-	XAC0040	-	hypothetical protein	
41	 64.30       50146..51288    	 +	380	21240815	wbdB	XAC0041	-	mannosyltransferase B	
42	 62.57       51285..52457    	 +	390	21240816	wbpZ	XAC0042	-	glycosyltransferase	
43	 66.52       52524..53933    	 +	469	21240817	wcaJ	XAC0043	-	UDP-glucose lipid carrier transferase	
44	 65.86       53953..55071    	 +	372	21240818	bplD	XAC0044	-	lipopolysaccharide biosynthesis protein	
45	 66.82       55159..56427    	 -	422	21240819	-	XAC0045	-	hypothetical protein	
46	 68.73 +1    56424..57200    	 -	258	21240820	rffM	XAC0046	-	UDP-N-acetyl-D-mannosamine transferase	
47	 66.76       57197..58276    	 -	359	21240821	-	XAC0047	-	galactosyltransferase	
48	 67.89       58280..59671    	 -	463	21240822	-	XAC0048	-	hypothetical protein	
49	 70.69 +1    59608..60900    	 -	430	21240823	-	XAC0049	-	hypothetical protein	
50	 67.69       60851..61633    	 -	260	21240824	-	XAC0050	-	conserved hypothetical protein	
51	 66.61       61865..63706    	 -	613	21240825	asnB	XAC0051	-	asparagine synthase	
52	 68.62       63759..65141    	 -	460	21240826	-	XAC0052	-	hypothetical protein	
53	 62.98       65102..65941    	 -	279	21240827	-	XAC0053	-	methyltransferase	
54	 68.97 +1    66191..67147    	 -	318	21240828	rmd	XAC0054	-	degenerated UDP-glucose epimerase	
55	 67.12       67144..68472    	 -	442	21240829	-	XAC0055	-	hypothetical protein	
56	 70.89 +1    68506..69735    	 -	409	21240830	-	XAC0056	-	polysaccharide export protein	
57	 68.90 +1    69732..71480    	 -	582	21240831	hetA	XAC0057	-	transport protein	
58	 72.19 +1    71477..71965    	 -	162	21240832	-	XAC0058	-	hypothetical protein	
59	 69.37 +1    72303..74228    	 -	641	21240833	asn	XAC0059	-	asparagine synthetase like protein	
60	 66.42       74626..75426    	 +	266	21240834	-	XAC0060	-	hypothetical protein	
61	 62.39       75448..75774    	 +	108	21240835	-	XAC0061	-	conserved hypothetical protein	
62	 66.34       75798..76718    	 +	306	21240836	-	XAC0062	-	conserved hypothetical protein	
63	 67.03       76715..77539    	 +	274	21240837	-	XAC0063	-	aryl sulfotransferase	
64	 66.31       77555..78121    	 -	188	21240838	-	XAC0064	-	acetyltransferase	
65	 64.29       78079..78666    	 -	195	21240839	-	XAC0065	-	microcystin dependent protein	
66	 65.22       78691..79242    	 -	183	21240840	-	XAC0066	-	microcystin dependent protein	
67	 66.67       79267..79791    	 -	174	21240841	mdpB	XAC0067	-	microcystin dependent protein	
68	 65.93       80281..81369    	 +	362	21240842	-	XAC0068	-	hypothetical protein	
69	 66.67       81857..82243    	 +	128	21240843	mecI	XAC0069	-	methicillin resistance protein	
70	 69.34 +1    82247..83968    	 +	573	21240844	-	XAC0070	-	ankyrin-like protein	
71	 67.05       84643..85683    	 +	346	21240845	-	XAC0071	-	conserved hypothetical protein	
72	 68.70 +1    85767..86897    	 +	376	21240846	-	XAC0072	-	conserved hypothetical protein	
73	 63.87       87037..87822    	 -	261	21240847	-	XAC0073	-	conserved hypothetical protein	
74	 68.04       87833..90448    	 -	871	21240848	cirA	XAC0074	-	TonB-dependent receptor	
75	 68.31       90593..91750    	 +	385	21240849	xylR	XAC0075	-	xylose repressor-like protein	
76	 64.15       91940..94084    	 +	714	21240850	avrBs2	XAC0076	-	avirulence protein	
77	 67.08       94574..95551    	 -	325	21240851	-	XAC0077	-	conserved hypothetical protein	
78	 66.79       96058..98466    	 -	802	21240852	-	XAC0078	-	ATP-dependent RNA helicase	
79	 65.75       98737..99393    	 +	218	21240853	-	XAC0079	-	hemolysin III	
80	 59.30 -1    99461..99718    	 +	85	21240854	-	XAC0080	-	conserved hypothetical protein	
81	 60.33 -1    99706..100005   	 +	99	21240855	-	XAC0081	-	conserved hypothetical protein	
82	 69.11 +1   100185..101084   	 -	299	21240856	-	XAC0082	-	short chain oxidoreductase	
83	 66.80      101144..101881   	 -	245	21240857	-	XAC0083	-	short chain dehydrogenase	
84	 66.67      102007..102918   	 +	303	21240858	yhjC	XAC0084	-	transcriptional regulator lysR family	
85	 61.78      103084..104085   	 -	333	21240859	-	XAC0085	-	conserved hypothetical protein	
86	 61.82      104350..104865   	 +	171	21240860	-	XAC0086	-	hypothetical protein	
87	 62.93      105104..105424   	 +	106	21240861	-	XAC0087	-	hypothetical protein	
88	 61.43      105661..106137   	 -	158	21240862	-	XAC0088	-	NAD(P)H oxidoreductase	
89	 42.48 -2   106232..107182   	 -	316	21240863	abiR	XAC0089	-	abortive infection phage resistance protein	
90	 62.27      107220..107492   	 +	90	21240864	-	XAC0090	-	ISxac3 transposase	
91	 62.58      107546..108352   	 +	268	21240865	-	XAC0091	-	ISxac3 transposase	
92	 42.84 -2   108392..109222   	 -	276	21240866	-	XAC0092	-	hypothetical protein	
93	 61.98      109267..110481   	 -	404	21240867	-	XAC0093	-	ISxac1 transposase	
94	 62.65      110518..111015   	 +	165	21240868	-	XAC0094	-	conserved hypothetical protein	
95	 64.86      111185..111406   	 -	73	21240869	-	XAC0095	-	conserved hypothetical protein	
96	 56.05 -2   111806..113746   	 -	646	21240870	-	XAC0096	-	conserved hypothetical protein	
97	 50.39 -2   113716..114354   	 -	212	21240871	-	XAC0097	-	hypothetical protein	
98	 44.98 -2   114472..114780   	 -	102	21240872	-	XAC0098	-	hypothetical protein	
99	 64.06      115510..115893   	 -	127	21240873	-	XAC0099	-	hypothetical protein	
100	 59.79 -1   116066..116254   	 -	62	21240874	-	XAC0100	-	conserved hypothetical protein	

 
 64.78 MEAN 
 
 3.84  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.