IslandPath Analysis: Wolinella succinogenes



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.62   STD DEV: 3.50
Wolinella succinogenes DSM 1740, complete genome - 0..2110355
2044 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 41.17        1..1314     	 +	437	34556459	dnaA	WS0000	-	dnaA, probable chromosomal replication initiator protein	
2	 41.39 -2     1474..2541     	 +	355	34556460	DNAN	WS0001	-	DNA POLYMERASE III, BETA CHAIN	
3	 44.29 -1     2561..4879     	 +	772	34556461	gyrB	WS0002	-	DNA GYRASE SUBUNIT B	
4	 42.67 -1     4890..5264     	 +	124	34556462	-	WS0003	-	conserved hypothetical protein	
5	 47.53        5274..5900     	 +	208	34556463	-	WS0004	-	PUTATIVE INTEGRAL MEMBRANE PROTEIN	
6	 47.53        5897..6220     	 +	107	34556464	-	WS0005	-	hypothetical protein	
7	 47.70        6224..8179     	 -	651	34556465	-	WS0006	-	PUTATIVE CHOLINE TRANSPORTER	
8	 46.04        8279..9136     	 -	285	34556466	-	WS0007	-	conserved hypothetical protein	
9	 51.02        9299..9790     	 -	163	34556467	CYTB	WS0008	-	CYTB PROTEIN	
10	 49.37        9802..10917    	 -	371	34556468	CYTA	WS0009	-	CYTA PROTEIN PRECURSOR	
11	 46.64       11081..11989    	 +	302	34556469	-	WS0010	-	conserved hypothetical protein	
12	 45.55       11986..12648    	 +	220	34556470	-	WS0011	-	PUTATIVE TWO-COMPONENT REGULATOR	
13	 48.04       12635..13810    	 +	391	34556471	-	WS0012	-	PUTATIVE TWO-COMPONENT SENSOR	
14	 47.60       13805..15325    	 -	506	34556472	-	WS0013	-	hypothetical protein	
15	 47.03       15331..15717    	 -	128	34556473	kpsF	WS0014	-	hypothetical protein	
16	 46.72       15737..16087    	 -	116	34556474	-	WS0015	-	hypothetical protein	
17	 51.20       16210..17547    	 -	445	34556475	-	WS0016	-	PUTATIVE TWO-COMPONENT SENSOR	
18	 49.83       17550..18725    	 -	391	34556476	-	WS0017	-	conserved hypothetical protein	
19	 49.87       18745..19863    	 -	372	34556477	PLDA	WS0018	-	OUTER MEMBRANE PHOSPHOLIPASE A PRECURSOR	
20	 50.44       20198..20875    	 -	225	34556478	-	WS0020	-	conserved hypothetical protein	
21	 47.09       20918..23527    	 +	869	34556479	-	WS0021	-	POSSIBLE NUCLEOTIDYLTRANSFERASE	
22	 49.83       23584..25371    	 +	595	34556480	GLMS	WS0022	-	GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE ISOMERIZING	
23	 47.05       25378..27207    	 +	609	34556481	-	WS0023	-	conserved hypothetical protein	
24	 51.39       27326..28444    	 +	372	34556482	-	WS0024	-	ASPARTATE AMINOTRANSFERASE	
25	 48.15       28447..29499    	 +	350	34556483	WCFX	WS0025	-	PUTATIVE UDP-GLUCURONIC ACID EPIMERASE	
26	 46.51       29832..30620    	 -	262	34556484	FDHD	WS0026	-	FDHD PROTEIN	
27	 47.56       30617..31537    	 -	306	34556485	FDHC	WS0027	-	FORMATE DEHYDROGENASE SUBUNIT C PRECURSOR	
28	 49.59       31540..32142    	 -	200	34556486	FDHB	WS0028	-	PUTATIVE FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT	
29	 48.33       32153..34972    	 -	939	34556487	FDHA	WS0029	-	FORMATE DEHYDROGENASE PRECURSOR	
30	 44.93 -1    35023..35229    	 -	68	34556488	-	WS0030	-	hypothetical protein	
31	 48.82       35536..35832    	 -	98	34556489	-	WS0031	-	conserved hypothetical protein	
32	 51.44       35897..36277    	 -	126	34556490	FDXA	WS0032	-	hypothetical protein	
33	 49.57       36363..36824    	 +	153	34556491	-	WS0033	-	conserved hypothetical protein	
34	 47.85       36886..37071    	 +	61	34556492	-	WS0035	-	hypothetical protein	
35	 49.55       37074..38849    	 -	591	34556493	PGLF	WS0036	-	PUTATIVE SUGAR EPIMERASE/DEHYDRATASE	
36	 52.90 +1    38846..39949    	 -	367	34556494	wlaK	WS0037	-	AMINOTRANSFERASE HOMOLOG	
37	 51.14       39946..40557    	 -	203	34556495	PGLB	WS0038	-	PGLB (PILIN GLYCOSYLATION PROTEIN PGLB)	
38	 48.77       40554..41162    	 -	202	34556496	WCGN	WS0039	-	PUTATIVE PHOSPHATE TRANSFERASE	
39	 50.13       41140..42306    	 -	388	34556497	WLAG	WS0040	-	PUTATIVE GALACTOSYLTRANSFERASE	
40	 51.66       42303..44135    	 -	610	34556498	WBPS	WS0042	-	WBPS	
41	 50.52       44140..46263    	 -	707	34556499	WLAF	WS0043	-	PUTATIVE INTEGRAL MEMBRANE PROTEIN POSSIBLE OLIGOSACCHARYLTRANSFERASE	
42	 52.74 +1    46260..47408    	 -	382	34556500	WLAE	WS0044	-	WLAE PROTEIN	
43	 51.27       47409..49265    	 -	618	34556501	glmS	WS0046	-	GALACTOSYL TRANSFERASE, GDP-MANNOSE PYROPHOSPHORYLASE,PHOSPHOMANNOMUTASE, UDP-GALACTOSE 4-EPIMERASE, GALACTOSYL TRANSFERASE,NUCLEOTIDE SUGAR DEHYDROGENASE, NUCLEOTIDE SUGAR EPIMERASE, ANDPUTATIVE EPIMERASE/DEHYDRATASE GENES; AND UNKNOWN GENES	
44	 52.27 +1    49250..50374    	 -	374	34556502	-	WS0047	-	PUTATIVE GLYCOSYLTRANSFERASE PROTEIN	
45	 48.65       50407..51183    	 -	258	34556503	-	WS0048	-	hypothetical protein	
46	 51.16       51165..51899    	 -	244	34556504	-	WS0049	-	hypothetical protein	
47	 53.15 +1    51899..52993    	 -	364	34556505	-	WS0050	-	WLAC PROTEIN	
48	 51.49       53011..53952    	 -	313	34556506	WBCL	WS0051	-	TRSC	
49	 46.69       53942..55633    	 -	563	34556507	WLAB	WS0052	-	WLAB PROTEIN	
50	 47.86       55749..57008    	 +	419	34556508	WBGT	WS0054	-	PUTATIVE UDP-GLUCOSE 6-DEHYDROGENASE	
51	 45.76       57005..57664    	 -	219	34556509	RHPR	WS0055	-	PUTATIVE TWO-COMPONENT REGULATOR	
52	 50.84       57733..58509    	 -	258	34556510	-	WS0056	-	PUTATIVE PERIPLASMIC PROTEIN	
53	 51.98       58520..59554    	 -	344	34556511	MREB	WS0057	-	PUTATIVE ROD SHAPE-DETERMINING PROTEIN	
54	 47.93       59582..60835    	 -	417	34556512	CLPX	WS0058	-	CLP PROTEASE	
55	 49.06       60828..61628    	 -	266	34556513	lpxA	WS0059	-	ACYL-CARRIER-PROTEIN	
56	 47.37       61625..62080    	 -	151	34556514	fabZ	WS0060	-	PUTATIVE 3R-HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN	
57	 49.42       62162..63274    	 -	370	34556515	-	WS0061	-	conserved hypothetical protein	
58	 47.04       63337..64416    	 -	359	34556516	-	WS0062	-	conserved hypothetical protein	
59	 45.54       64400..64948    	 -	182	34556517	-	WS0063	-	conserved hypothetical protein	
60	 50.07       64948..65712    	 -	254	34556518	HISF	WS0064	-	CYCLASE HISF	
61	 47.78       66006..66725    	 +	239	34556519	KSGA	WS0065	-	PUTATIVE DIMETHYLADENOSINE TRANSFERASE 16S RRNA DIMETHYLASEEC 2.1.1.	
62	 49.27       66700..68745    	 +	681	34556520	-	WS0066	-	conserved hypothetical protein	
63	 50.67       68756..69724    	 +	322	34556521	-	WS0067	-	conserved hypothetical protein	
64	 42.50 -1    69741..69980    	 +	79	34556522	INT	WS0068	-	hypothetical protein	
65	 43.02 -1    70050..71030    	 +	326	34556523	-	WS0069	-	conserved hypothetical protein	
66	 52.80 +1    71060..71470    	 +	136	34556524	PAB1098	WS0070	-	hypothetical protein	
67	 52.15 +1    71476..72894    	 -	472	34556525	-	WS0071	-	KH DOMAIN PROTEIN	
68	 47.36       72956..73618    	 -	220	34556526	-	WS0072	-	conserved hypothetical protein	
69	 46.06       73704..74261    	 +	185	34556527	-	WS0073	-	PUTATIVE LIPOPROTEIN THIREDOXIN	
70	 50.17       74262..75164    	 +	300	34556528	FTSY	WS0074	-	SIGNAL RECOGNITION PARTICLE PROTEIN	
71	 51.56       75139..76482    	 +	447	34556529	RADA	WS0075	-	DNA REPAIR PROTEIN RADA HOMOLOG DNA REPAIR PROTEIN SMS HOMOLOG	
72	 48.43       76548..77024    	 +	158	34556530	-	WS0076	-	hypothetical protein	
73	 49.18       77064..77732    	 +	222	34556531	-	WS0077	-	PUTATIVE TWO-COMPONENT REGULATOR	
74	 48.42       77722..78954    	 +	410	34556532	-	WS0078	-	PUTATIVE TWO-COMPONENT SENSOR	
75	 50.78       78974..79552    	 +	192	34556533	CYTB	WS0079	-	hypothetical protein	
76	 50.52       79539..80783    	 -	414	34556534	cute	WS0080	-	APOLIPOPROTEIN N-ACYLTRANSFERASE	
77	 45.10 -1    80749..81309    	 -	186	34556535	-	WS0081	-	conserved hypothetical protein	
78	 48.75       81373..81930    	 +	185	34556536	-	WS0083	-	PUTATIVE INTEGRAL MEMBRANE PROTEIN	
79	 48.82       81955..83478    	 +	507	34556537	lysS	WS0084	-	LYSYL-TRNA SYNTHETASE	
80	 49.88       83475..84725    	 +	416	34556538	GLYA3	WS0085	-	SERINE HYDROXYMETHYLTRANSFERASE (SERINE METHYLASE)(GLYCINE HYDROXYMETHYLTRANSFERASE) (SHMT)	
81	 47.44       84768..85313    	 +	181	34556539	-	WS0086	-	conserved hypothetical protein	
82	 52.82 +1    85339..86118    	 +	259	34556540	-	WS0087	-	hypothetical protein	
83	 48.91       86126..87544    	 +	472	34556541	CAC3163	WS0088	-	ANTHRANILATE SYNTHASE COMPONENT I	
84	 46.63       87555..88088    	 -	177	34556542	-	WS0089	-	hypothetical protein	
85	 52.61 +1    88095..88784    	 -	229	34556543	-	WS0090	-	PUTATIVE PHOSPHOHYDROLASE	
86	 50.35       88789..89934    	 -	381	34556544	-	WS0091	-	conserved hypothetical protein	
87	 50.54       89950..90867    	 -	305	34556545	ILVE	WS0092	-	BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE	
88	 52.82 +1    91058..91909    	 -	283	34556546	-	WS0093	-	LIN1802 PROTEIN	
89	 51.68       91911..93905    	 -	664	34556547	-	WS0094	-	METHYL-ACCEPTING CHEMOTAXIS PROTEIN II	
90	 47.62       93918..94400    	 -	160	34556548	cheV	WS0095	-	hypothetical protein	
91	 51.04       94478..96871    	 -	797	34556549	FTSK	WS0096	-	SEPTUM FORMATION PROTEIN	
92	 47.18       97093..97800    	 +	235	34556550	-	WS0098	-	hypothetical protein	
93	 44.08 -1    97882..98802    	 +	306	34556551	-	WS0099	-	LIN0826 PROTEIN	
94	 51.71       98799..99032    	 -	77	34556552	-	WS0100	-	hypothetical protein	
95	 54.65 +1    99029..99985    	 -	318	34556553	lpxD	WS0101	-	PUTATIVE ACYLTRANSFERASEPROTEIN	
96	 52.23 +1   100006..100476   	 -	156	34556554	ILVH	WS0102	-	ACETOLACTATE SYNTHASE SMALL SUBUNIT	
97	 49.62      100480..102168   	 -	562	34556555	ILVI	WS0103	-	ACETOLACTATE SYNTHASE LARGE SUBUNIT	
98	 51.10      102241..103146   	 -	301	34556556	-	WS0104	-	POSSIBLE PHOSPHATASE	
99	 50.95      103247..104035   	 +	262	34556557	pdxJ	WS0105	-	PYRIDOXAL PHOSPHATE BIOSYNTHETIC PROTEIN PDXJ	
100	 50.87      104032..104955   	 +	307	34556558	pdxA	WS0106	-	PDXA HOMOLOG	

 
 48.62 MEAN 
 
 3.50  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.