IslandPath Analysis: Wolbachia endosymbiont of Drosophila melanogaster



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.43   STD DEV: 3.58
Wolbachia endosymbiont of Drosophila melanogaster, complete genome - 0..1267782
1195 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 34.42      153..1535     	 +	460	42519921	dnaA	WD0001	-	chromosomal replication initiator protein DnaA	
2	 33.52        3145..4227     	 +	360	42519922	ribA	WD0003	-	GTP cyclohydrolase II	
3	 30.10 -1     4300..4980     	 +	226	42519923	-	WD0004	-	type IV secretion system protein VirB8	
4	 30.06 -1     4973..5767     	 +	264	42519924	-	WD0005	-	type IV secretion system protein VirB9	
5	 37.03        5784..7244     	 +	486	42519925	-	WD0006	-	type IV secretion system protein VirB10	
6	 37.97        7246..8238     	 +	330	42519926	-	WD0007	-	type IV secretion system protein VirB11	
7	 36.26        8269..10215    	 +	648	42519927	-	WD0008	-	type IV secretion system protein VirD4	
8	 36.87       10337..11185    	 +	282	42519928	-	WD0009	-	surface antigen Wsp paralog	
9	 34.88       11350..12189    	 -	279	42519929	-	WD0010	-	modification methylase, HemK family	
10	 41.48 +1    12529..12663    	 -	44	42519930	-	WD0012	-	hypothetical protein	
11	 36.30       12642..12776    	 +	44	42519931	-	WD0013	-	hypothetical protein	
12	 41.07 +1    13302..13676    	 +	124	42519932	rpsL	WD0014	-	ribosomal protein S12	
13	 37.92       13682..14161    	 +	159	42519933	rpsG	WD0015	-	ribosomal protein S7	
14	 36.71       14183..16258    	 +	691	42519934	fusA	WD0016	-	translation elongation factor G	
15	 43.14 +2    16270..17442    	 +	390	42519935	tuf	WD0017	-	translation elongation factor Tu	
16	 30.48 -1    17539..17748    	 +	69	42519936	-	WD0018	-	protein translocase subunit SecE	
17	 30.12 -1    17984..18574    	 +	196	42519937	-	WD0019	-	transcription antitermination protein NusG, putative	
18	 37.87       18577..19017    	 +	146	42519938	rplK	WD0020	-	ribosomal protein L11	
19	 32.26       19022..19675    	 +	217	42519939	rplA	WD0021	-	ribosomal protein L1	
20	 31.98       19688..20206    	 +	172	42519940	rplJ	WD0022	-	ribosomal protein L10	
21	 35.82       20233..20634    	 +	133	42519941	rplL	WD0023	-	ribosomal protein L7/L12	
22	 35.76       20693..29206    	 +	2837	42519942	rpoBC	WD0024	-	DNA-directed RNA polymerase, beta/beta' subunits	
23	 40.60 +1    29213..30175    	 -	320	42519943	-	WD0025	-	NifR3 family protein	
24	 32.91       30201..30677    	 -	158	42519944	-	WD0026	-	hypothetical protein	
25	 36.27       30692..31168    	 -	158	42519945	-	WD0027	-	hypothetical protein	
26	 37.56       31467..32744    	 +	425	42519946	serS	WD0028	-	seryl-tRNA synthetase	
27	 37.19       32779..34050    	 +	423	42519947	purD	WD0029	-	phosphoribosylamine--glycine ligase	
28	 27.78 -2    34458..34565    	 -	35	42519948	-	WD0031	-	hypothetical protein	
29	 33.33       34679..34954    	 -	91	42519949	-	WD0032	-	hypothetical protein	
30	 33.10       35323..36585    	 -	420	42519950	-	WD0033	-	hypothetical protein	
31	 31.35 -1    36604..37257    	 -	217	42519951	-	WD0034	-	hypothetical protein	
32	 35.99       37671..38537    	 +	288	42519952	-	WD0035	-	ankyrin repeat domain protein	
33	 35.60       38841..39767    	 +	308	42519953	prsA	WD0036	-	ribose-phosphate pyrophosphokinase	
34	 33.62       39757..40110    	 +	117	42519954	-	WD0037	-	glutamyl-tRNA(Gln) amidotransferase, C subunit, putative	
35	 33.81       40152..41414    	 -	420	42519955	-	WD0038	-	tolB protein, putative	
36	 37.06       41420..43054    	 -	544	42519956	-	WD0039	-	metallo-beta-lactamase family protein	
37	 37.53       43264..44382    	 -	372	42519957	dnaJ	WD0040	-	dnaJ protein	
38	 38.36       44606..45241    	 -	211	42519958	-	WD0041	-	hypothetical protein	
39	 38.44       45767..46177    	 -	136	42519959	-	WD0042	-	conserved hypothetical protein	
40	 33.48       46174..46860    	 -	228	42519960	-	WD0043	-	reverse transcriptase, interruption-C	
41	 36.26       46857..47198    	 -	113	42519961	-	WD0044	-	transposase, IS5 family, OrfB	
42	 36.75       47309..47689    	 -	126	42519962	-	WD0045	-	transposase, IS5 family, OrfA	
43	 36.03       49261..49668    	 -	135	42519963	-	WD0047	-	conserved domain protein	
44	 34.58       51062..51301    	 -	79	42519964	-	WD0049	-	hypothetical protein	
45	 37.98       51258..51515    	 -	85	42519965	-	WD0050	-	transposase, degenerate	
46	 32.16       51493..51834    	 +	113	42519966	-	WD0051	-	hypothetical protein	
47	 36.87       51846..52043    	 -	65	42519967	-	WD0052	-	hypothetical protein	
48	 35.51       52111..52752    	 +	213	42519968	-	WD0053	-	dioxygenase, putative	
49	 37.19       52849..54351    	 +	500	42519969	pepA	WD0054	-	cytosol aminopeptidase	
50	 35.44       55045..56232    	 +	395	42519970	-	WD0056	-	major facilitator family transporter	
51	 31.70 -1    56293..56598    	 +	101	42519971	-	WD0057	-	DNA-binding protein, HU family	
52	 33.33       56598..56924    	 +	108	42519972	-	WD0058	-	conserved hypothetical protein	
53	 36.30       56994..57566    	 +	190	42519973	nlpD	WD0059	-	peptidase, M23/M37 family	
54	 37.98       57579..60095    	 +	838	42519974	leuS	WD0060	-	leucyl-tRNA synthetase	
55	 38.21       60224..60859    	 +	211	42519975	-	WD0061	-	hypothetical protein	
56	 35.29       61230..61331    	 +	33	42519976	-	WD0062	-	hypothetical protein	
57	 36.58       62503..63210    	 +	235	42519977	pdxJ	WD0064	-	pyridoxal phosphate biosynthetic protein PdxJ	
58	 32.05       63203..63514    	 -	103	42519978	-	WD0065	-	DNA-binding protein, HU family	
59	 36.40       63661..64116    	 -	151	42519979	rpsI	WD0066	-	ribosomal protein S9	
60	 35.95       64127..64585    	 -	152	42519980	rplM	WD0067	-	ribosomal protein L13	
61	 34.15       64715..65938    	 +	407	42519981	-	WD0068	-	outer membrane protein TolC, putative	
62	 31.60 -1    65958..66533    	 +	191	42519982	-	WD0069	-	hypothetical protein	
63	 33.51       66610..67188    	 +	192	42519983	-	WD0070	-	ribosomal RNA large subunit methyltransferase J, putative	
64	 26.85 -2    67587..67694    	 -	35	42519984	-	WD0072	-	hypothetical protein	
65	 34.71       68396..70798    	 +	800	42519985	-	WD0073	-	ankyrin repeat domain protein	
66	 27.83 -2    70932..71258    	 +	108	42519986	-	WD0074	-	hypothetical protein	
67	 40.86 +1    71248..71340    	 -	30	42519987	-	WD0075	-	hypothetical protein	
68	 35.61       71395..71877    	 +	160	42519988	-	WD0076	-	uncharacterized phage protein, putative	
69	 29.93 -1    72249..72659    	 +	136	42519989	-	WD0077	-	hypothetical protein	
70	 30.26 -1    72634..73023    	 +	129	42519990	-	WD0078	-	hypothetical protein	
71	 37.50       73059..73874    	 +	271	42519991	-	WD0079	-	hypothetical protein	
72	 42.86 +2    74176..74280    	 +	34	42519992	-	WD0080	-	hypothetical protein	
73	 34.31       75578..76705    	 -	375	42519993	-	WD0082	-	conserved hypothetical protein	
74	 31.13 -1    76813..77628    	 -	271	42519994	-	WD0083	-	hypothetical protein	
75	 27.62 -2    77726..77830    	 +	34	42519995	-	WD0084	-	hypothetical protein	
76	 36.39       77862..78647    	 +	261	42519996	fabI	WD0085	-	enoyl-(acyl-carrier-protein) reductase	
77	 35.39       78664..80169    	 -	501	42519997	secD	WD0086	-	protein-export membrane protein SecD	
78	 38.45       81378..82862    	 -	494	42519998	guaB	WD0089	-	inosine-5'-monophosphate dehydrogenase	
79	 32.29       82988..83848    	 -	286	42519999	ksgA	WD0090	-	dimethyladenosine transferase	
80	 33.06       83976..84704    	 +	242	42520000	tpiA	WD0091	-	triosephosphate isomerase	
81	 36.36       84779..85867    	 -	362	42520001	dprA	WD0092	-	DNA processing chain A	
82	 34.67       85929..86303    	 +	124	42520002	-	WD0093	-	ferredoxin, 4Fe-4S	
83	 33.33       86633..87280    	 +	215	42520003	-	WD0094	-	hypothetical protein	
84	 33.33       87366..88313    	 +	315	42520004	-	WD0095	-	D-alanine--D-alanine ligase	
85	 33.73       88294..89052    	 +	252	42520005	-	WD0096	-	cell division protein FtsQ, putative	
86	 34.87       90714..91820    	 +	368	42520006	-	WD0098	-	D-alanyl-D-alanine carboxypeptidase	
87	 33.97       91920..92234    	 +	104	42520007	-	WD0099	-	multidrug resistance protein	
88	 34.20       92251..92595    	 +	114	42520008	sugE	WD0100	-	sugE protein	
89	 40.35 +1    93139..93423    	 +	94	42520009	-	WD0102	-	hypothetical protein	
90	 36.84       94147..97287    	 -	1046	42520010	putA	WD0103	-	proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase	
91	 37.74       97422..100007   	 -	861	42520011	acnA	WD0105	-	aconitate hydratase	
92	 33.33      100022..100525   	 -	167	42520012	secB	WD0106	-	protein-export protein SecB	
93	 29.65 -1   100690..101340   	 +	216	42520013	-	WD0107	-	conserved domain protein	
94	 35.49      101358..102053   	 +	231	42520014	dnaQ	WD0108	-	DNA polymerase III, epsilon subunit	
95	 34.81      102098..102706   	 +	202	42520015	-	WD0109	-	SCO1/SenC family protein	
96	 43.30 +2   102737..102997   	 +	86	42520016	-	WD0110	-	hypothetical protein	
97	 34.96      103297..103419   	 +	40	42520017	-	WD0111	-	hypothetical protein	
98	 34.55      103515..105902   	 +	795	42520018	gyrB	WD0112	-	DNA gyrase, B subunit	
99	 50.78 +2   105996..106253   	 +	85	42520019	-	WD0113	-	hypothetical protein	
100	 30.62 -1   107885..109213   	 +	442	42520020	-	WD0115	-	transposase, IS4 family	

 
 35.43 MEAN 
 
 3.58  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.