IslandPathversion 1.0

IslandPath Analysis: Vibrio vulnificus YJ016 chromosome I



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.27 STD DEV: 4.02
Vibrio vulnificus YJ016 chromosome I, complete sequence - 0..3354505
3259 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 51.49      353..787      	 -	144	37678185	-	VV0001	-	MioC protein	
2	 51.12 +1      835..2223     	 -	462	37678186	-	VV0002	-	thiophene and furan oxidation protein ThdF	
3	 48.89        2314..3933     	 -	539	37678187	-	VV0003	-	inner membrane protein, 60 kDa	
4	 45.10        4160..4516     	 -	118	37678188	-	VV0004	-	RNase P protein component	
5	 49.65        4530..4670     	 -	46	37678189	-	VV0005	-	ribosomal protein L34	
6	 49.19        4898..5635     	 -	245	37678190	-	VV0006	-	ABC-type polar amino acid transport system, ATPase component	
7	 48.80        5632..6342     	 -	236	37678191	-	VV0007	-	ABC-type amino acid transport system, permease component	
8	 47.14        6385..7137     	 -	250	37678192	-	VV0009	-	ABC-type amino acid transport system, periplasmic component	
9	 49.08        6389..6661     	 +	90	37678193	-	VV0008	-	hypothetical protein	
10	 39.02 -1     7282..7404     	 +	40	37678194	-	VV0010	-	hypothetical protein	
11	 49.68        7450..8856     	 +	468	37678195	-	VV0011	-	chromosomal DNA replication initiator DnaA	
12	 50.68 +1     8917..10017    	 +	366	37678196	-	VV0012	-	DNA polymerase III, beta chain	
13	 46.48       10027..11106    	 +	359	37678197	-	VV0013	-	Recombinational DNA repair ATPase	
14	 49.21       11125..13542    	 +	805	37678198	-	VV0014	-	DNA gyrase, subunit B	
15	 46.67       13955..14389    	 +	144	37678199	-	VV0015	-	16 kDa heat shock protein A	
16	 45.80       14370..16631    	 -	753	37678200	-	VV0017	-	GGDEF family protein	
17	 41.36 -1    15081..15242    	 +	53	37678201	-	VV0016	-	hypothetical protein	
18	 47.10       16651..17907    	 -	418	37678202	-	VV0018	-	valine-pyruva_e aminotransferase	
19	 45.18       18206..18568    	 +	120	37678203	-	VV0019	-	hypothetical protein	
20	 48.80       18651..20732    	 -	693	37678204	-	VV0020	-	glycyl-tRNA synthetase, beta subunit	
21	 48.37       20746..21663    	 -	305	37678205	-	VV0021	-	glycyl-tRNA synthetase, alpha subunit	
22	 50.99 +1    22144..22698    	 +	184	37678206	-	VV0022	-	predicted membrane protein	
23	 41.00 -1    22858..23118    	 +	86	37678207	-	VV0023	-	NADH dehydrogenase subunit II-related protein	
24	 46.75       23158..23403    	 -	81	37678208	-	VV0024	-	predicted redox protein	
25	 43.01       23535..23720    	 +	61	37678209	-	VV0025	-	conserved hypothetical protein	
26	 52.17 +1    23849..24814    	 +	321	37678210	-	VV0026	-	transcriptional regulator	
27	 51.89 +1    24886..25866    	 -	326	37678211	-	VV0027	-	Zn-binding alcohol dehydrogenase	
28	 52.32 +1    26027..27190    	 -	387	37678212	-	VV0028	-	acetyl-CoA acetyltransferase	
29	 49.31       27203..29374    	 -	723	37678213	-	VV0029	-	3-hydroxyacyl-CoA dehydrogenase	
30	 46.96       29622..30245    	 +	207	37678214	-	VV0030	-	conserved hypothetical protein	
31	 48.77       30291..31748    	 +	485	37678215	-	VV0031	-	Trk-type K+ transport system, membrane component	
32	 39.39 -1    31661..31792    	 +	43	37678216	-	VV0032	-	hypothetical protein	
33	 41.24 -1    31755..32285    	 +	176	37678217	-	VV0033	-	protoporphyrinogen oxidase	
34	 41.56 -1    38276..39199    	 -	307	37678218	-	VV0034	-	transcriptional activator IlvY	
35	 46.46       39308..40792    	 +	494	37678219	-	VV0035	-	ketol-acid reductoisomerase	
36	 42.86       40988..41239    	 -	83	37678220	-	VV0036	-	conserved hypothetical protein	
37	 50.00       41385..44504    	 -	1039	37678221	-	VV0037	-	putative multidrug resistance protein	
38	 46.43       44516..45622    	 -	368	37678222	-	VV0038	-	membrane-fusion protein	
39	 44.85       45640..46221    	 -	193	37678223	-	VV0039	-	transcriptional regulator	
40	 49.03       46389..48407    	 +	672	37678224	-	VV0040	-	ATP-dependent DNA helicase Rep	
41	 47.68       48469..48921    	 -	150	37678225	-	VV0041	-	cytochrome c5	
42	 29.94 -2    50663..50839    	 -	58	37678226	-	VV0042	-	hypothetical protein	
43	 49.59       50886..52601    	 +	571	37678227	-	VV0043	-	Peptide ABC transporter, ATP-binding protein	
44	 49.52       52677..54233    	 +	518	37678228	-	VV0044	-	Peptide ABC transporter, periplasmic peptide-binding protein	
45	 48.77       54385..55362    	 +	325	37678229	-	VV0045	-	peptide ABC transporter, permease component	
46	 51.01 +1    55365..56303    	 +	312	37678230	-	VV0046	-	peptide ABC transporter, permease component	
47	 43.65       56374..56499    	 +	41	37678231	-	VV0047	-	hypothetical protein	
48	 47.94       56490..57434    	 +	314	37678232	-	VV0048	-	conserved hypothetical protein	
49	 46.53       57492..60218    	 -	908	37678233	-	VV0049	-	hypothetical protein	
50	 48.15       60471..61334    	 +	287	37678234	-	VV0050	-	hypothetical protein	
51	 51.75 +1    61356..62957    	 -	533	37678235	-	VV0051	-	hypothetical protein	
52	 48.34       62933..63505    	 -	190	37678236	-	VV0052	-	putative RNA polymerase ECF-type sigma factor	
53	 50.76 +1    63502..64941    	 -	479	37678237	-	VV0053	-	conserved hypothetical protein	
54	 51.09 +1    64970..66304    	 -	444	37678238	-	VV0054	-	conserved hypothetical protein	
55	 49.25       66457..67254    	 -	265	37678239	-	VV0055	-	conserved hypothetical protein	
56	 49.39       67355..68251    	 +	298	37678240	-	VV0056	-	response regulator	
57	 51.59 +1    68267..69334    	 +	355	37678241	-	VV0057	-	gluconate utilization system Gnt-I transcriptional repressor	
58	 53.64 +1    69026..69286    	 -	86	37678242	-	VV0058	-	hypothetical protein	
59	 55.93 +2    69385..71181    	 -	598	37678243	-	VV0059	-	phosphogluconate dehydratase	
60	 50.57 +1    71178..71699    	 -	173	37678244	-	VV0060	-	thermoresistant gluconokinase	
61	 51.41 +1    71813..73228    	 +	471	37678245	-	VV0061	-	putative gluconate permease	
62	 52.78 +1    73238..73849    	 +	203	37678246	-	VV0062	-	2-keto-3-deoxy-6-phosphogluconate aldolase	
63	 39.76 -1    74322..74819    	 +	165	37678247	-	VV0063	-	putative membrane protein	
64	 38.61 -1    74819..75349    	 +	176	37678248	-	VV0064	-	hypothetical protein	
65	 53.10 +1    75517..76872    	 -	451	37678249	-	VV0065	-	glutathione reductase	
66	 51.19 +1    77024..77863    	 -	279	37678250	-	VV0066	-	conserved hypothetical protein	
67	 52.39 +1    78071..80179    	 +	702	37678251	-	VV0067	-	Zn-dependent oligopeptidase	
68	 48.21       80227..80757    	 +	176	37678252	-	VV0068	-	hypothetical protein	
69	 49.03       80299..80763    	 -	154	37678253	-	VV0069	-	transcriptional regulator	
70	 50.21       80872..84018    	 +	1048	37678254	-	VV0070	-	sensory box/GGDEF family protein	
71	 54.49 +2    84128..84907    	 +	259	37678255	-	VV0071	-	SAM-dependent methyltransferase	
72	 47.97       85067..85558    	 +	163	37678256	-	VV0072	-	hypothetical protein	
73	 50.84 +1    85662..86552    	 -	296	37678257	-	VV0073	-	madN protein	
74	 45.39       86618..87148    	 -	176	37678258	-	VV0075	-	universal stress protein UspA	
75	 42.57       87100..87738    	 +	212	37678259	-	VV0074	-	ferritin-like protein	
76	 44.14       87825..88148    	 +	107	37678260	-	VV0076	-	conserved hypothetical protein	
77	 52.39 +1    88206..89438    	 +	410	37678261	-	VV0077	-	predicted flavoprotein	
78	 50.59 +1    89512..90693    	 -	393	37678262	-	VV0078	-	uncharacterized enzyme of heme biosynthesis	
79	 49.83       90690..91901    	 -	403	37678263	-	VV0079	-	uncharacterized enzyme of heme biosynthesis	
80	 50.83 +1    91916..92698    	 -	260	37678264	-	VV0080	-	uroporphyrinogen-III synthase	
81	 53.57 +1    92649..93587    	 -	312	37678265	-	VV0081	-	porphobilinogen deaminase	
82	 43.45       93713..93880    	 +	55	37678266	-	VV0082	-	hypothetical protein	
83	 49.03       93951..96485    	 +	844	37678267	-	VV0083	-	adenylate cyclase	
84	 46.03       96618..96932    	 -	104	37678268	-	VV0085	-	frataxin-like protein	
85	 41.20 -1    96909..97124    	 +	71	37678269	-	VV0084	-	hypothetical protein	
86	 51.91 +1    97173..98426    	 +	417	37678270	-	VV0086	-	diaminopimelate decarboxylase	
87	 50.66 +1    98437..99267    	 +	276	37678271	-	VV0087	-	diaminopimelate epimerase	
88	 50.43 +1    99310..100011   	 +	233	37678272	-	VV0088	-	conserved hypothetical protein	
89	 52.94 +1    99962..100930   	 +	322	37678273	-	VV0089	-	site-specific recombinase XerC	
90	 53.70 +1   100927..101643   	 +	238	37678274	-	VV0090	-	predicted hydrolase	
91	 51.33 +1   101773..104262   	 +	829	37678275	-	VV0091	-	GGDEF family protein	
92	 53.63 +1   104312..104917   	 -	201	37678276	-	VV0092	-	conserved hypothetical protein	
93	 52.55 +1   104914..106464   	 -	516	37678277	-	VV0093	-	predicted membrane protein	
94	 48.24      106494..106976   	 +	160	37678278	-	VV0094	-	conserved hypothetical protein	
95	 50.42 +1   107074..107904   	 -	276	37678279	-	VV0095	-	predicted hydrolase	
96	 49.55      108085..109083   	 -	332	37678280	-	VV0096	-	lysophospholipase	
97	 50.16      109141..109764   	 +	207	37678281	-	VV0097	-	putative threonine efflux protein	
98	 48.77      109818..111041   	 +	407	37678282	-	VV0098	-	predicted signal transduction protein	
99	 48.51      111148..111483   	 +	111	37678283	-	VV0099	-	predicted transcriptional regulator	
100	 52.20 +1   111513..112514   	 +	333	37678284	-	VV0100	-	glyceraldehyde 3-phosphate dehydrogenase	

 
 46.27 MEAN 
 
 4.02  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.