IslandPath Analysis: Treponema denticola ATCC 35405



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.25   STD DEV: 5.76
Treponema denticola ATCC 35405, complete genome - 0..2843201
2767 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 38.30      166..1575     	 -	469	42525520	dnaA	TDE0001	-	chromosomal replication initiator protein DnaA	
2	 44.91 +1     1684..3600     	 +	638	42525521	gyrB	TDE0002	-	DNA gyrase, B subunit	
3	 41.53        3623..4342     	 +	239	42525522	-	TDE0003	-	membrane protein, putative	
4	 42.22        4383..5057     	 +	224	42525523	-	TDE0004	-	membrane protein, putative	
5	 40.81        5075..6130     	 -	351	42525524	ltaE	TDE0005	-	L-threonine aldolase, low-specificity	
6	 40.73        6200..9784     	 -	1194	42525525	-	TDE0006	-	Snf2 family protein	
7	 33.68       10014..10868    	 +	284	42525526	-	TDE0007	-	conserved hypothetical protein	
8	 43.24 +1    11031..13706    	 +	891	42525527	-	TDE0008	-	copper-translocating P-type ATPase	
9	 39.17       13814..14635    	 -	273	42525528	-	TDE0009	-	hypothetical protein	
10	 39.68       14720..15286    	 +	188	42525529	-	TDE0010	-	MutT/nudix family protein	
11	 42.90       15548..16195    	 +	215	42525530	-	TDE0011	-	alkyl hydroperoxide reductase/peroxiredoxin	
12	 40.55       16308..17762    	 +	484	42525531	-	TDE0012	-	carbon starvation protein CstA, putative	
13	 43.31 +1    17848..18729    	 -	293	42525532	folD	TDE0013	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	
14	 40.29       18930..19547    	 +	205	42525533	-	TDE0014	-	conserved hypothetical protein	
15	 38.34       19567..20604    	 +	345	42525534	-	TDE0015	-	lipoprotein, putative	
16	 45.02 +1    20597..21922    	 +	441	42525535	-	TDE0016	-	ATPase, AAA family	
17	 41.79       21998..23026    	 -	342	42525536	-	TDE0017	-	conserved hypothetical protein	
18	 42.71       23163..23663    	 -	166	42525537	-	TDE0018	-	LysM domain protein	
19	 42.64       23755..25419    	 -	554	42525538	fhs	TDE0019	-	formate--tetrahydrofolate ligase	
20	 39.23       25586..26941    	 +	451	42525539	glyS	TDE0020	-	glycyl-tRNA synthetase	
21	 33.63       26954..27955    	 +	333	42525540	-	TDE0021	-	CDP-alcohol phosphatidyltransferase family protein	
22	 35.26       28012..28581    	 +	189	42525541	-	TDE0022	-	hypothetical protein	
23	 33.33       28613..29509    	 -	298	42525542	-	TDE0023	-	acetyltransferase, GNAT family	
24	 41.82       29509..31182    	 -	557	42525543	-	TDE0024	-	glycosyl hydrolase, family 3	
25	 36.17       31191..31649    	 -	152	42525544	-	TDE0025	-	conserved hypothetical protein	
26	 40.72       31916..33106    	 -	396	42525545	-	TDE0026	-	TraB family protein	
27	 37.50       33093..34076    	 -	327	42525546	-	TDE0027	-	DHH superfamily protein, subfamily 1	
28	 33.17       34146..36020    	 -	624	42525547	-	TDE0028	-	ABC transporter, ATP-binding protein, HlyB family	
29	 34.51       36034..37812    	 -	592	42525548	-	TDE0029	-	ABC transporter, ATP-binding protein, HlyB family	
30	 29.36 -1    38018..38797    	 -	259	42525549	-	TDE0030	-	prolipoprotein diacylglyceryl transferase, putative	
31	 44.06 +1    38925..39185    	 -	86	42525550	-	TDE0031	-	hypothetical protein	
32	 36.01       39321..40067    	 -	248	42525551	-	TDE0032	-	histidine kinase-related ATPase, putative	
33	 34.86       40067..40786    	 -	239	42525552	-	TDE0033	-	DNA-binding response regulator	
34	 26.02 -1    40803..41540    	 -	245	42525553	-	TDE0034	-	hypothetical protein	
35	 41.27       41670..42110    	 -	146	42525554	-	TDE0035	-	acetyltransferase, GNAT family	
36	 28.50 -1    42225..42617    	 -	130	42525555	-	TDE0036	-	hypothetical protein	
37	 34.54       42641..42889    	 -	82	42525556	-	TDE0037	-	transcriptional regulator, AbrB family	
38	 47.65 +1    43126..44361    	 -	411	42525557	fabF	TDE0038	-	3-oxoacyl-(acyl-carrier-protein) synthase II	
39	 34.85       44579..45763    	 -	394	42525558	-	TDE0039	-	ISTde1, transposase	
40	 43.80 +1    45866..47518    	 -	550	42525559	-	TDE0040	-	AMP-binding protein	
41	 44.00 +1    47637..48695    	 +	352	42525560	birA	TDE0041	-	birA bifunctional protein	
42	 47.72 +1    48816..49823    	 +	335	42525561	pta	TDE0042	-	phosphate acetyltransferase	
43	 42.83       49828..51711    	 +	627	42525562	-	TDE0043	-	TPR domain protein	
44	 38.02       51750..53222    	 -	490	42525563	-	TDE0044	-	ABC transporter, ATP-binding protein	
45	 35.56       53359..55203    	 -	614	42525564	-	TDE0045	-	ABC transporter, ATP-binding protein	
46	 46.26 +1    55298..55939    	 -	213	42525565	-	TDE0046	-	formiminotransferase-cyclodeaminase family protein	
47	 44.69 +1    56010..57251    	 -	413	42525566	hutI	TDE0047	-	imidazolonepropionase	
48	 30.82 -1    57277..57912    	 -	211	42525567	-	TDE0048	-	hypothetical protein	
49	 36.48       58289..59179    	 -	296	42525568	-	TDE0049	-	conserved hypothetical protein	
50	 41.32       59373..60161    	 -	262	42525569	-	TDE0050	-	RNA methyltransferase, TrmH family	
51	 40.19       60163..61314    	 -	383	42525570	-	TDE0051	-	alcohol dehydrogenase, iron-containing	
52	 36.30       61445..61714    	 +	89	42525571	fliQ	TDE0052	-	flagellar biosynthetic protein FliQ	
53	 39.25       61733..62527    	 +	264	42525572	fliR	TDE0053	-	flagellar biosynthetic protein FliR	
54	 39.13       62524..63696    	 +	390	42525573	flhB	TDE0054	-	flagellar biosynthetic protein FlhB	
55	 42.35       63705..65801    	 +	698	42525574	flhA	TDE0055	-	flagellar biosynthesis protein FlhA	
56	 40.10       65846..66052    	 +	68	42525575	-	TDE0056	-	DNA-directed RNA polymerase, omega subunit, putative	
57	 42.25       66075..67061    	 +	328	42525576	miaA-1	TDE0057	-	tRNA delta(2)-isopentenylpyrophosphate transferase	
58	 43.54 +1    67126..67458    	 +	110	42525577	-	TDE0058	-	conserved domain protein	
59	 39.81       67434..67541    	 +	35	42525578	-	TDE0059	-	hypothetical protein	
60	 35.26       67617..67928    	 -	103	42525579	-	TDE0060	-	hypothetical protein	
61	 37.92       67988..69034    	 -	348	42525580	-	TDE0061	-	fic family protein	
62	 39.84       69230..69721    	 +	163	42525581	-	TDE0062	-	PTS system, IIA component	
63	 36.46       69854..71389    	 +	511	42525582	-	TDE0063	-	conserved hypothetical protein	
64	 42.29       71425..72741    	 -	438	42525583	pfk	TDE0064	-	phosphofructokinase	
65	 33.71       72912..73436    	 -	174	42525584	-	TDE0065	-	conserved hypothetical protein	
66	 34.69       73426..74016    	 -	196	42525585	-	TDE0066	-	conserved hypothetical protein	
67	 40.54       74031..75278    	 -	415	42525586	-	TDE0067	-	cyclic nucleotide-binding protein	
68	 42.23       75437..76672    	 +	411	42525587	-	TDE0068	-	peptidase, M20/M25/M40 family	
69	 42.48       76691..77707    	 +	338	42525588	-	TDE0069	-	conserved hypothetical protein TIGR00238	
70	 34.90       77853..78680    	 +	275	42525589	-	TDE0070	-	RNA polymerase sigma-70 factor, region 2 family	
71	 42.08       78742..80982    	 +	746	42525590	-	TDE0071	-	peptidase, U32 family	
72	 35.34       81061..83199    	 +	712	42525591	-	TDE0072	-	methyl-accepting chemotaxis protein	
73	 35.71       83249..84172    	 -	307	42525592	-	TDE0073	-	riboflavin biosynthesis protein RibF, putative	
74	 36.53       84246..85589    	 -	447	42525593	-	TDE0074	-	amino acid permease family protein	
75	 41.83       85617..86663    	 -	348	42525594	-	TDE0075	-	sorbitol dehydrogenase, putative	
76	 42.36       86679..87476    	 -	265	42525595	-	TDE0076	-	aldolase, DeoC/FbaB family	
77	 37.99       87512..88822    	 -	436	42525596	grdE-1	TDE0077	-	glycine reductase complex proprotein GrdE1	
78	 40.84       88835..90166    	 -	443	42525597	grdB-1	TDE0078	-	glycine reductase complex selenoprotein GrdB1	
79	 35.42       90185..90760    	 -	191	42525598	-	TDE0079	-	DNA-binding protein	
80	 39.60       90818..92302    	 -	494	42525599	gbsA	TDE0080	-	betaine aldehyde dehydrogenase	
81	 36.21       92643..94031    	 -	462	42525600	-	TDE0081	-	hypothetical protein	
82	 37.74       94024..94341    	 -	105	42525601	-	TDE0082	-	transcriptional regulator, MerR family	
83	 40.32       94344..95774    	 -	476	42525602	engA	TDE0083	-	GTP-binding protein EngA	
84	 39.78       95761..97545    	 -	594	42525603	ptsI	TDE0084	-	phosphoenolpyruvate-protein phosphotransferase	
85	 33.27       97686..101105   	 -	1139	42525604	-	TDE0085	-	ATP-dependent DNA helicase, UvrD/Rep family	
86	 32.45      101129..103966   	 -	945	42525605	-	TDE0086	-	conserved hypothetical protein	
87	 39.26      104079..105479   	 +	466	42525606	trkA	TDE0087	-	Trk system potassium uptake protein TrkA	
88	 42.76      105487..106929   	 +	480	42525607	trkH	TDE0088	-	Trk system potassium uptake protein TrkH	
89	 37.98      106965..108644   	 -	559	42525608	-	TDE0089	-	transglutaminase-like domain protein	
90	 34.84      108634..109296   	 -	220	42525609	-	TDE0090	-	hypothetical protein	
91	 38.31      109280..109822   	 -	180	42525610	-	TDE0091	-	RNA polymerase sigma-24 factor, putative	
92	 39.15      109867..111345   	 -	492	42525611	cysS	TDE0092	-	cysteinyl-tRNA synthetase	
93	 39.20      111397..112368   	 +	323	42525612	-	TDE0093	-	UDP-N-acetylenolpyruvoylglucosamine reductase, putative	
94	 24.00 -2   112359..112508   	 +	49	42525613	-	TDE0094	-	hypothetical protein	
95	 34.03      112539..112682   	 +	47	42525614	-	TDE0095	-	hypothetical protein	
96	 40.00      112863..114197   	 +	444	42525615	-	TDE0096	-	NADH oxidase	
97	 28.57 -1   114337..114861   	 +	174	42525616	-	TDE0097	-	conserved hypothetical protein	
98	 34.44      114932..115651   	 -	239	42525617	-	TDE0098	-	conserved domain protein	
99	 35.35      115788..117074   	 +	428	42525618	-	TDE0099	-	adenine-specific DNA modification methyltransferase	
100	 41.30      117064..119034   	 -	656	42525619	-	TDE0100	-	conserved hypothetical protein	

 
 37.25 MEAN 
 
 5.76  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.