IslandPath Analysis: Thermus thermophilus HB27 chromosome



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.35   STD DEV: 3.27
Thermus thermophilus HB27, complete genome - 0..1894877
1982 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 67.49       74..1171     	 -	365	46198309	-	TTC0001	-	hypothetical protein	
2	 71.47        1281..2051     	 +	256	46198310	-	TTC0002	-	dehydrogenase	
3	 72.01        2097..2639     	 -	180	46198311	-	TTC0003	-	hypothetical conserved protein	
4	 73.86 +1     2666..3985     	 +	439	46198312	-	TTC0004	-	hypothetical conserved protein	
5	 67.26        3973..4311     	 +	112	46198313	-	TTC0005	-	hypothetical conserved protein	
6	 71.00        4359..6134     	 +	591	46198314	vdcC	TTC0006	-	vdcC protein	
7	 68.97        6172..6822     	 +	216	46198315	-	TTC0007	-	hypothetical conserved protein	
8	 72.31        6969..7517     	 -	182	46198316	-	TTC0008	-	O-sialoglycoprotein endopeptidase	
9	 66.98        7480..8745     	 +	421	46198317	-	TTC0009	-	sugar ABC transporter, permease protein	
10	 69.93        8735..9928     	 +	397	46198318	-	TTC0010	-	sugar ABC transporter, permease protein	
11	 66.75        9984..11237    	 +	417	46198319	-	TTC0011	-	sugar ABC transporter, periplasmic sugar-binding protein, putative	
12	 69.78       11299..13161    	 +	620	46198320	-	TTC0012	-	probable tungsten-containing aldehyde ferredoxin oxidoreductase	
13	 72.44       13132..13806    	 -	224	46198321	-	TTC0013	-	hypothetical protein	
14	 68.97       13870..14346    	 +	158	46198322	-	TTC0014	-	hypothetical protein	
15	 69.92       14362..14607    	 +	81	46198323	-	TTC0015	-	hypothetical protein	
16	 67.96       14595..15446    	 +	283	46198324	-	TTC0016	-	prolipoprotein diacylglyceryl transferase	
17	 70.53       15448..16818    	 +	456	46198325	-	TTC0017	-	UDP-N-acetylglucosamine pyrophosphorylase	
18	 67.12       16863..17084    	 +	73	46198326	tatA	TTC0018	-	Sec-independent protein translocase protein tatA	
19	 66.53       17081..17821    	 +	246	46198327	tatC	TTC0019	-	Sec-independent protein translocase protein tatC	
20	 67.23       17855..18922    	 +	355	46198328	-	TTC0020	-	phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase	
21	 71.37       18925..19689    	 +	254	46198329	-	TTC0021	-	ferredoxin	
22	 68.85       19686..19868    	 +	60	46198330	-	TTC0022	-	hypothetical protein	
23	 70.76       19892..21529    	 +	545	46198331	-	TTC0023	-	fumarate/succinate/L-aspartate dehydrogenases	
24	 70.23       21534..21926    	 +	130	46198332	coA	TTC0024	-	probable methylmalonyl-coA epimerase	
25	 70.21       21926..22264    	 +	112	46198333	-	TTC0025	-	hypothetical membrane spanning protein	
26	 70.47       22218..22901    	 -	227	46198334	-	TTC0026	-	cehydrogenase	
27	 71.62       22906..23895    	 -	329	46198335	-	TTC0027	-	hypothetical membrane spanning protein	
28	 70.06       23892..26366    	 -	824	46198336	-	TTC0028	-	hypothetical conserved protein	
29	 72.22       26363..27406    	 -	347	46198337	-	TTC0029	-	hypothetical membrane spanning protein	
30	 72.50       27403..28413    	 -	336	46198338	-	TTC0030	-	hypothetical membrane spanning protein	
31	 72.66 +1    28469..28885    	 -	138	46198339	-	TTC0031	-	hypothetical protein	
32	 71.98       29053..30087    	 -	344	46198340	-	TTC0032	-	dehydrogenase	
33	 70.74       30084..30476    	 -	130	46198341	-	TTC0033	-	hypothetical conserved protein	
34	 71.10       30522..30950    	 +	142	46198342	-	TTC0034	-	hypothetical protein	
35	 68.39       30936..32792    	 -	618	46198343	ftsH	TTC0035	-	cell division protein ftsH	
36	 73.73 +1    32844..34217    	 +	457	46198344	-	TTC0036	-	hypothetical conserved protein	
37	 71.80       34238..35269    	 -	343	46198345	-	TTC0037	-	hypothetical protein	
38	 69.63       35266..36276    	 -	336	46198346	ruvB	TTC0038	-	holliday junction DNA helicase ruvB	
39	 70.29       36197..37051    	 +	284	46198347	-	TTC0039	-	3-methyl-2-oxobutanoate hydroxymethyltransferase	
40	 72.31       37123..38025    	 +	300	46198348	-	TTC0040	-	ribosomal large subunit pseudouridine synthase D	
41	 66.02 -1    38022..38948    	 +	308	46198349	-	TTC0041	-	methyltransferase	
42	 62.89 -1    39291..39608    	 +	105	46198350	-	TTC0042	-	hypothetical protein	
43	 69.18       39582..40775    	 -	397	46198351	-	TTC0043	-	alpha-aminodipate aminotransferase	
44	 70.56       40871..42001    	 -	376	46198352	-	TTC0044	-	dNTP triphosphohydrolase	
45	 70.66       42001..43227    	 -	408	46198353	-	TTC0045	-	3-oxoacyl-[acyl-carrier-protein] synthase	
46	 61.32 -2    43347..43589    	 -	80	46198354	-	TTC0046	-	acyl carrier protein	
47	 69.51       43622..44359    	 -	245	46198355	-	TTC0047	-	3-oxoacyl-[acyl-carrier protein] reductase	
48	 70.15       44352..45269    	 -	305	46198356	-	TTC0048	-	malonyl-CoA-[acyl-carrier-protein] transacylase	
49	 69.45       45269..46237    	 -	322	46198357	-	TTC0049	-	3-oxoacyl-[acyl-carrier-protein] synthase III	
50	 69.40       46402..46584    	 -	60	46198358	-	TTC0050	-	probable 50S ribosomal protein L32	
51	 68.72       46644..47180    	 -	178	46198359	-	TTC0051	-	hypothetical conserved protein	
52	 68.54       47269..47748    	 -	159	46198360	-	TTC0052	-	probable nitrilotriacetate monooxygenase component B	
53	 72.55       47772..49658    	 -	628	46198361	-	TTC0053	-	hypothetical conserved protein	
54	 69.65       49668..50372    	 -	234	46198362	-	TTC0054	-	probable UDP-N-acetyl-D-mannosaminuronic acid transferase	
55	 72.94 +1    50360..51076    	 -	238	46198363	-	TTC0055	-	hypothetical protein	
56	 70.51       51104..52039    	 +	311	46198364	-	TTC0056	-	thiamin-monophosphate kinase	
57	 70.23       52176..52793    	 +	205	46198365	-	TTC0057	-	NADH dehydrogenase	
58	 71.67       52790..53149    	 -	119	46198366	-	TTC0058	-	hypothetical protein	
59	 69.26       53184..53492    	 +	102	46198367	-	TTC0059	-	hypothetical protein	
60	 69.54       53514..54557    	 +	347	46198368	-	TTC0060	-	putative histidinol-phosphate aminotransferase protein	
61	 71.45       54550..55134    	 +	194	46198369	-	TTC0061	-	imidazoleglycerol-phosphate dehydratase	
62	 69.51       55250..55846    	 +	198	46198370	hisH	TTC0062	-	amidotransferase hisH	
63	 72.42       55817..56737    	 -	306	46198371	-	TTC0063	-	sugar kinase	
64	 68.76       56882..58363    	 +	493	46198372	-	TTC0064	-	inosine-5'-monophosphate dehydrogenase	
65	 67.10       58360..58590    	 -	76	46198373	-	TTC0065	-	hypothetical protein	
66	 71.81       58631..59116    	 +	161	46198374	-	TTC0066	-	hypothetical protein	
67	 67.37       59061..59486    	 -	141	46198375	-	TTC0067	-	disulfide bond formation protein B	
68	 71.37       59620..60534    	 -	304	46198376	tsY	TTC0068	-	signal recognition particle receptor FtsY	
69	 71.07       60534..61055    	 -	173	46198377	-	TTC0069	-	hypothetical protein	
70	 67.73       60991..62397    	 -	468	46198378	-	TTC0070	-	glutamyl-tRNA synthetase	
71	 66.80       62452..63180    	 +	242	46198379	-	TTC0071	-	probable ABC transport protein, ATP-binding component	
72	 74.78 +1    63183..64526    	 +	447	46198380	-	TTC0072	-	hypothetical protein	
73	 74.78 +1    63819..65321    	 -	500	46198381	-	TTC0073	-	methyltransferase	
74	 71.05       65334..65903    	 -	189	46198382	-	TTC0074	-	probable jag protein	
75	 67.29       65913..67205    	 -	430	46198383	-	TTC0075	-	probable membrane protein	
76	 70.28       67202..67450    	 -	82	46198384	-	TTC0076	-	alpha-hemolysin	
77	 67.88       67455..68033    	 -	192	46198385	-	TTC0077	-	ribonuclease P protein subunit	
78	 66.54       68107..68868    	 +	253	46198386	livG	TTC0078	-	branched-chain amino acid transport ATP-binding protein livG	
79	 67.29       68865..70799    	 +	644	46198387	-	TTC0079	-	long-chain-fatty-acid-CoA ligase	
80	 67.90       70796..71689    	 +	297	46198388	livH	TTC0080	-	branched-chain amino acid transport system permease protein livH	
81	 65.76 -1    71652..72752    	 +	366	46198389	livM	TTC0081	-	branched-chain amino acid transport system permease protein livM	
82	 66.25       72792..73988    	 +	398	46198390	-	TTC0082	-	leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein	
83	 67.27       74033..74866    	 +	277	46198391	livF	TTC0083	-	branched-chain amino acid transport ATP-binding protein livF	
84	 72.06       74933..75673    	 +	246	46198392	mntA	TTC0084	-	manganese transport system ATP-binding protein mntA	
85	 70.01       75666..76472    	 +	268	46198393	mntB	TTC0085	-	manganese transport system membrane protein mntB	
86	 71.56       76497..76946    	 +	149	46198394	-	TTC0086	-	rrf2 family protein	
87	 73.60 +1    76962..78086    	 +	374	46198395	-	TTC0087	-	cysteine desulfhydrase/selenocysteine lyase	
88	 73.44 +1    78119..79402    	 +	427	46198396	-	TTC0088	-	3-phosphoshikimate 1-carboxyvinyltransferase	
89	 74.32 +1    79387..80013    	 +	208	46198397	-	TTC0089	-	cytidylate kinase	
90	 65.50 -1    80017..80790    	 +	257	46198398	-	TTC0090	-	hypothetical protein	
91	 67.15       80754..81164    	 +	136	46198399	-	TTC0091	-	hypothetical conserved protein	
92	 68.65       81161..81865    	 +	234	46198400	-	TTC0092	-	putative dihydropteridine reductase	
93	 65.10 -1    82076..82267    	 +	63	46198401	-	TTC0093	-	probable transmembrane protein	
94	 70.43       82264..82794    	 +	176	46198402	-	TTC0094	-	probable cysteinyl-tRNA synthetase	
95	 74.19 +1    83333..83518    	 +	61	46198403	-	TTC0095	-	hypothetical protein	
96	 68.25       83829..84836    	 -	335	46198404	-	TTC0096	-	thioredoxin reductase	
97	 70.93       84869..85900    	 -	343	46198405	-	TTC0097	-	alcohol dehydrogenase	
98	 63.69 -1    86014..87762    	 +	582	46198406	appA	TTC0098	-	oligopeptide-binding protein appA	
99	 64.06 -1    87804..88802    	 +	332	46198407	appB	TTC0099	-	oligopeptide transport system permease protein appB	
100	 68.00       88810..90156    	 +	448	46198408	appC	TTC0100	-	oligopeptide transport system permease protein appC	

 
 69.35 MEAN 
 
 3.27  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.