IslandPath Analysis: Symbiobacterium thermophilum IAM 14863



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.88   STD DEV: 4.16
Symbiobacterium thermophilum, complete genome - 0..3566135
3337 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 63.11        1..1377     	 +	458	51891139	dnaA	STH1	-	chromosomal replication initiation protein	
2	 64.50 -1     1600..2706     	 +	368	51891140	-	STH2	-	DNA polymerase III beta subunit	
3	 67.98        2718..2945     	 +	75	51891141	-	STH3	-	conserved hypothetical protein	
4	 67.82        2948..4075     	 +	375	51891142	recF	STH4	-	DNA repair and genetic recombination protein	
5	 68.25        4075..4326     	 +	83	51891143	-	STH5	-	conserved hypothetical protein	
6	 64.48 -1     4461..6377     	 +	638	51891144	gyrB	STH6	-	DNA gyrase B subunit	
7	 66.30        6411..8852     	 +	813	51891145	gyrA	STH7	-	DNA gyrase A subunit	
8	 70.79        9323..10486    	 +	387	51891146	-	STH8	-	class-V aminotransferase	
9	 70.98       10621..12243    	 +	540	51891147	-	STH9	-	phosphoglycerate dehydrogenase	
10	 65.72       12383..13648    	 +	421	51891148	serS	STH10	-	seryl-tRNA synthetase	
11	 70.59       13929..14387    	 +	152	51891149	-	STH11	-	putative Cu-binding protein	
12	 74.74 +1    14467..16176    	 +	569	51891150	-	STH12	-	ABC-type dipeptide/oligopeptide/nickel transport systems periplasmic components	
13	 71.75       16249..17961    	 +	570	51891151	-	STH13	-	DNA polymerase III gamma and tau subunits	
14	 64.24 -1    17961..18290    	 +	109	51891152	-	STH14	-	conserved hypothetical protein	
15	 67.67       18297..18893    	 +	198	51891153	recR	STH15	-	recombination protein	
16	 66.60       19233..20681    	 +	482	51891154	gltX	STH16	-	glutamyl-tRNA synthetase	
17	 66.32       27453..28316    	 +	287	51891155	-	STH17	-	spermidine synthase	
18	 69.39       28313..29194    	 +	293	51891156	-	STH18	-	arginase-family protein	
19	 68.63       29238..30914    	 +	558	51891157	argS	STH19	-	arginyl-tRNA synthetase	
20	 64.57 -1    31521..32810    	 +	429	51891158	-	STH20	-	group II intron-encoding maturase	
21	 69.21       32954..34408    	 +	484	51891159	-	STH21	-	sulfate transporter family protein	
22	 60.81 -1    34519..34740    	 +	73	51891160	-	STH22	-	cyanate hydrolase variant	
23	 66.67       34805..35347    	 +	180	51891161	-	STH23	-	conserved hypothetical protein	
24	 64.03 -1    35424..36638    	 +	404	51891162	-	STH24	-	two-component sensor histidine kinase	
25	 65.00       36556..36975    	 +	139	51891163	-	STH25	-	two-component response regulator variant	
26	 64.56 -1    36994..37230    	 +	78	51891164	-	STH26	-	two-component response regulator variant	
27	 66.90       37306..37734    	 -	142	51891165	-	STH27	-	conserved hypothetical protein	
28	 69.35       37868..38389    	 +	173	51891166	-	STH28	-	RNA polymerase ECF-type sigma factor	
29	 69.70       38379..39170    	 +	263	51891167	-	STH29	-	transmembrane protein	
30	 73.31 +1    39270..40142    	 +	290	51891168	-	STH30	-	putative lipoprotein	
31	 73.04       40213..41529    	 +	438	51891169	-	STH31	-	sigma-54-dependent transcriptional regulator variant	
32	 71.43       41714..41860    	 +	48	51891170	-	STH32	-	unknown protein	
33	 67.81       41942..43162    	 +	406	51891171	-	STH33	-	similar to multidrug resistance protein variant	
34	 71.22       43159..44169    	 +	336	51891172	-	STH34	-	Zn-dependent alcohol dehydrogenases and related dehydrogenases	
35	 67.63       44210..45556    	 +	448	51891173	-	STH35	-	lysine 2,3-aminomutase	
36	 77.28 +2    45549..46688    	 +	379	51891174	-	STH36	-	hypothetical protein	
37	 69.87       46745..48307    	 +	520	51891175	-	STH37	-	lysine 5,6-aminomutase alpha subunit	
38	 68.97       48304..49041    	 +	245	51891176	-	STH38	-	lysine 5,6-aminomutase beta subunit	
39	 62.50 -1    49305..49784    	 +	159	51891177	rpoE	STH39	-	RNA polymerase delta subunit	
40	 66.79       49916..51541    	 +	541	51891178	-	STH40	-	CTP synthase	
41	 69.51       51693..52958    	 +	421	51891179	-	STH41	-	conserved hypothetical protein	
42	 62.77 -1    53089..53883    	 +	264	51891180	-	STH42	-	conserved hypothetical protein	
43	 62.61 -1    54262..57933    	 +	1223	51891181	-	STH43	-	putative middle wall protein precursor	
44	 57.61 -2    58396..61731    	 +	1111	51891182	-	STH44	-	putative middle wall protein precursor	
45	 60.43 -2    62090..62602    	 -	170	51891183	-	STH45	-	putative transposase subunit	
46	 59.18 -2    62680..62946    	 -	88	51891184	-	STH46	-	hypothetical protein	
47	 54.87 -2    63171..63365    	 +	64	51891185	-	STH47	-	hypothetical protein	
48	 65.55       63522..64148    	 +	208	51891186	-	STH48	-	hypothetical protein	
49	 64.67 -1    64229..64729    	 +	166	51891187	-	STH49	-	hypothetical protein	
50	 60.73 -1    64888..65106    	 +	72	51891188	-	STH50	-	putative transposase subunit	
51	 62.76 -1    65303..66427    	 +	374	51891189	-	STH51	-	transposase subunit	
52	 60.99 -1    66431..66712    	 +	93	51891190	-	STH52	-	putative transposase subunit	
53	 60.37 -2    66758..67186    	 +	142	51891191	-	STH53	-	putative transposase subunit	
54	 65.64       67313..68284    	 +	323	51891192	-	STH54	-	putative transposase	
55	 64.16 -1    68285..69121    	 +	278	51891193	-	STH55	-	conserved hypothetical protein	
56	 61.59 -1    69136..69411    	 +	91	51891194	-	STH56	-	hypothetical protein	
57	 65.02       69911..73786    	 -	1291	51891195	-	STH57	-	putative middle wall protein precursor	
58	 68.52       73957..77850    	 -	1297	51891196	-	STH58	-	putative middle wall protein precursor	
59	 66.85       78119..78649    	 +	176	51891197	-	STH59	-	hypothetical protein	
60	 70.24       78667..80064    	 +	465	51891198	-	STH60	-	putative carboxy-terminal processing proteinase	
61	 72.78       80223..81497    	 +	424	51891199	-	STH61	-	putative S-layer associated protein	
62	 72.80       81502..84810    	 +	1102	51891200	-	STH62	-	putative serine protease	
63	 72.22       84830..85261    	 +	143	51891201	-	STH63	-	putative acyl-CoA hydrolase	
64	 67.99       85266..86099    	 +	277	51891202	-	STH64	-	conserved hypothetical protein	
65	 69.60       86136..86783    	 +	215	51891203	-	STH65	-	hypothetical protein	
66	 66.51       86899..87549    	 +	216	51891204	-	STH66	-	transaldolase	
67	 70.27       87691..88662    	 +	323	51891205	-	STH67	-	fructose-1,6-bisphosphatase	
68	 75.49 +1    88729..89487    	 +	252	51891206	-	STH68	-	putative peptidase	
69	 70.43       89735..92203    	 -	822	51891207	-	STH69	-	penicillin amidase	
70	 75.26 +1    92280..94502    	 -	740	51891208	-	STH70	-	penicillin amidase	
71	 63.33 -1    94714..94923    	 +	69	51891209	rpmE	STH71	-	ribosomal protein L31	
72	 66.44       94987..95883    	 +	298	51891210	-	STH72	-	conserved hypothetical protein	
73	 67.41       95974..97044    	 +	356	51891211	-	STH73	-	peptide chain release factor 1	
74	 76.69 +1    97051..97968    	 +	305	51891212	-	STH74	-	putative protoporphyrinogen oxidase	
75	 72.48       98145..99194    	 +	349	51891213	-	STH75	-	putative translation factor	
76	 70.28       99191..99661    	 +	156	51891214	-	STH76	-	low molecular weight protein-tyrosine-phosphatase	
77	 67.57       99658..100098   	 +	146	51891215	-	STH77	-	ribose 5-phosphate isomerase	
78	 75.66 +1   100194..100727   	 +	177	51891216	-	STH78	-	conserved hypothetical protein	
79	 67.62      100742..101371   	 +	209	51891217	upp	STH79	-	uracil phosphoribosyltransferase	
80	 64.37 -1   101399..101833   	 +	144	51891218	-	STH80	-	dCMP deaminase	
81	 68.62      101938..103014   	 +	358	51891219	-	STH81	-	undecaprenyl-phosphate N-acetylglucosaminyltransferase	
82	 69.03      103132..104274   	 +	380	51891220	-	STH82	-	UDP-N-acetylglucosamine 2-epimerase	
83	 66.30      104440..104709   	 +	89	51891221	-	STH83	-	conserved domain protein	
84	 59.45 -2   104733..105023   	 +	96	51891222	-	STH84	-	conserved hypothetical protein	
85	 64.99      105020..105793   	 +	257	51891223	-	STH85	-	ATP synthase A subunit	
86	 63.25 -1   105938..106171   	 +	77	51891224	-	STH86	-	ATP synthase C subunit	
87	 65.64      106292..106780   	 +	162	51891225	-	STH87	-	ATP synthase B subunit	
88	 65.95      106780..107340   	 +	186	51891226	-	STH88	-	ATP synthase delta subunit	
89	 66.40      107349..108869   	 +	506	51891227	-	STH89	-	ATP synthase alpha subunit	
90	 67.01      108885..109751   	 +	288	51891228	-	STH90	-	ATP synthase gamma subunit	
91	 66.46      109785..111203   	 +	472	51891229	-	STH91	-	ATP synthase beta subunit	
92	 70.95      111205..111624   	 +	139	51891230	-	STH92	-	ATP synthase epsilon subunit	
93	 74.04 +1   111720..112424   	 -	234	51891231	-	STH93	-	conserved hypothetical protein	
94	 71.05      112455..113915   	 -	486	51891232	-	STH94	-	conserved hypothetical iron-sulphur protein	
95	 67.89      113905..114642   	 -	245	51891233	-	STH95	-	glycolate oxidase	
96	 70.64      114657..116393   	 -	578	51891234	-	STH96	-	L-lactate permease	
97	 71.19      116588..117295   	 -	235	51891235	-	STH97	-	GntR family transcriptional regulator	
98	 70.12      117282..118526   	 -	414	51891236	-	STH98	-	conserved hypothetical protein	
99	 67.23      118538..119428   	 -	296	51891237	-	STH99	-	conserved hypothetical protein	
100	 78.08 +2   119785..120546   	 +	253	51891238	-	STH100	-	conserved hypothetical protein	

 
 68.88 MEAN 
 
 4.16  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.