IslandPath Analysis: Synechococcus sp. WH8102



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.02   STD DEV: 6.10
Synechococcus sp. WH 8102, complete genome - 0..2434428
2517 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 60.88      174..1331     	 +	385	33864540	dnaN	SYNW0001	-	DNA polymerase III beta subunit	
2	 62.81        1333..2058     	 +	241	33864541	-	SYNW0002	-	conserved hypothetical protein	
3	 62.20        2103..4409     	 +	768	33864542	purL	SYNW0003	-	phosphoribosylformylglycinamidine synthetase II	
4	 59.56        4393..5898     	 +	501	33864543	purF	SYNW0004	-	Glutamine amidotransferase class-II:Phosphoribosyl transferase	
5	 60.40        5899..8373     	 -	824	33864544	-	SYNW0005	-	putative DNA topoisomerase chain A	
6	 54.42        8419..9300     	 -	293	33864545	-	SYNW0006	-	conserved hypothetical protein	
7	 60.46        9319..10284    	 -	321	33864546	-	SYNW0007	-	conserved hypothetical protein	
8	 59.07       10334..10978    	 +	214	33864547	-	SYNW0008	-	conserved hypothetical protein	
9	 55.24       11028..11762    	 +	244	33864548	-	SYNW0009	-	conserved hypothetical protein	
10	 59.75       11766..12401    	 +	211	33864549	-	SYNW0010	-	NusB family protein	
11	 60.01       12401..13858    	 +	485	33864550	ftsY	SYNW0011	-	signal recognition particle docking protein FtsY	
12	 60.41       13895..15316    	 +	473	33864551	-	SYNW0012	-	conserved hypothetical protein	
13	 58.40       15337..16752    	 +	471	33864552	argH	SYNW0013	-	Fumarate lyase:Delta crystallin	
14	 66.82 +1    16879..17523    	 +	214	33864553	-	SYNW0014	-	RNA-binding region RNP-1 (RNA recognition motif)	
15	 62.84       17529..18521    	 -	330	33864554	-	SYNW0015	-	Uncharacterized protein family UPF0034	
16	 58.97       18563..19069    	 +	168	33864555	-	SYNW0016	-	conserved hypothetical protein	
17	 61.58       19080..20318    	 +	412	33864556	-	SYNW0017	-	conserved hypothetical protein	
18	 54.47       20293..21366    	 -	357	33864557	pilC	SYNW0018	-	pili biogenesis protein	
19	 58.97       22538..24409    	 -	623	33864558	gspE1	SYNW0022	-	General secretion pathway protein E	
20	 59.82       24509..25165    	 +	218	33864559	grpE	SYNW0023	-	putative heat shock protein GrpE	
21	 62.87       25165..26298    	 +	377	33864560	dnaJ	SYNW0024	-	DnaJ protein	
22	 61.90       26298..26528    	 +	76	33864561	-	SYNW0025	-	conserved hypothetical protein	
23	 61.11       26535..27434    	 +	299	33864562	-	SYNW0026	-	conserved hypothetical protein	
24	 60.82       27409..27750    	 -	113	33864563	-	SYNW0027	-	conserved hypothetical protein	
25	 63.67       27775..28674    	 -	299	33864564	murB	SYNW0028	-	UDP-N-acetylenolpyruvoylglucosamine reductase	
26	 62.04       28674..30077    	 -	467	33864565	murC	SYNW0029	-	Probable UDP-N-acetylmuramate-alanine ligase	
27	 59.84       30250..31275    	 +	341	33864566	gap2	SYNW0030	-	glyceraldehyde 3-phosphate dehydrogenase (NADP+)	
28	 65.15       31341..32327    	 -	328	33864567	thiL	SYNW0031	-	putative thiamine monophosphate kinase	
29	 60.36       32324..33433    	 -	369	33864568	-	SYNW0032	-	putative cyclophilin-type peptidyl-prolyl cis-trans isomerase	
30	 59.04       33466..34029    	 +	187	33864569	efp	SYNW0033	-	Translation elongation factor EF-P	
31	 62.45       34026..34499    	 +	157	33864570	accB	SYNW0034	-	biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase	
32	 63.73       34496..35518    	 -	340	33864571	pdxA	SYNW0035	-	putative pyridoxal phosphate biosynthetic protein PdxA	
33	 57.06       35524..35700    	 +	58	33864572	-	SYNW0036	-	hypothetical	
34	 64.13       35685..36590    	 -	301	33864573	-	SYNW0037	-	conserved hypothetical protein	
35	 55.22       36800..37201    	 -	133	33864574	-	SYNW0038	-	HNH endonuclease:HNH nuclease	
36	 64.26       37349..38968    	 +	539	33864575	-	SYNW0039	-	possible helicase	
37	 61.03       39293..39718    	 -	141	33864576	-	SYNW0040	-	conserved hypothetical protein	
38	 67.06 +1    39765..40268    	 -	167	33864577	-	SYNW0041	-	conserved hypothetical protein	
39	 59.70       40277..40678    	 +	133	33864578	-	SYNW0042	-	conserved hypothetical protein	
40	 57.58       40717..40947    	 +	76	33864579	-	SYNW0043	-	conserved hypothetical protein	
41	 50.48 -1    41017..41226    	 +	69	33864580	-	SYNW0044	-	conserved hypothetical protein	
42	 62.84       41347..42573    	 -	408	33864581	DHSS	SYNW0045	-	soluble hydrogenase small subunit	
43	 65.82       42588..43655    	 +	355	33864582	cbiD	SYNW0046	-	cobalamin biosynthesis protein D	
44	 61.94       43692..45278    	 +	528	33864583	guaA	SYNW0047	-	GMP synthase (glutamine-hydrolysing)	
45	 64.05       45331..45942    	 +	203	33864584	-	SYNW0048	-	conserved hypothetical protein	
46	 63.91       45952..46314    	 +	120	33864585	-	SYNW0049	-	conserved hypothetical protein	
47	 62.70       46318..48105    	 +	595	33864586	-	SYNW0050	-	Putative penicillin-binding protein	
48	 64.22       48109..49254    	 -	381	33864587	sqdX	SYNW0051	-	SqdX	
49	 61.74       49268..50464    	 -	398	33864588	sqdB	SYNW0052	-	sulfolipid (UDP-sulfoquinovose) biosynthesis protein	
50	 62.07       50538..50711    	 -	57	33864589	-	SYNW0053	-	similar to high light-inducible protein	
51	 64.00       50807..51631    	 -	274	33864590	thiG	SYNW0054	-	thiamin biosynthesis protein	
52	 59.42       51683..52234    	 +	183	33864591	-	SYNW0055	-	conserved hypothetical protein	
53	 56.78       52258..52773    	 -	171	33864592	-	SYNW0056	-	conserved hypothetical protein	
54	 62.36       52783..53130    	 -	115	33864593	rpl20	SYNW0057	-	50S ribosomal protein L20	
55	 61.62       53171..53368    	 -	65	33864594	rpl35	SYNW0058	-	50S ribosomal protein L35	
56	 67.44 +1    53427..54974    	 +	515	33864595	-	SYNW0059	-	possible amidase enhancer	
57	 63.19       54999..56321    	 +	440	33864596	-	SYNW0060	-	putative glycosyltransferase	
58	 65.26       56384..58165    	 -	593	33864597	dnaX	SYNW0061	-	DNA polymerase, gamma and tau subunits	
59	 62.91       58189..58827    	 -	212	33864598	-	SYNW0062	-	conserved hypothetical protein	
60	 62.22       58846..60195    	 -	449	33864599	clpX	SYNW0063	-	Putative ATP-dependent protease ATP-binding subunit ClpX	
61	 62.81       60277..60951    	 -	224	33864600	clpP2	SYNW0064	-	ATP-dependent Clp protease proteolytic subunit 2	
62	 63.50       60995..62413    	 -	472	33864601	-	SYNW0065	-	Possible FKBP-type peptidyl-prolyl cis-trans isomerase	
63	 63.83       62542..63600    	 +	352	33864602	asd	SYNW0066	-	aspartate-semialdehyde dehydrogenase	
64	 64.14       63597..64505    	 +	302	33864603	dapA	SYNW0067	-	dihydrodipicolinate synthase	
65	 62.59       64556..66592    	 +	678	33864604	-	SYNW0068	-	conserved hypothetical protein	
66	 62.68       66593..67519    	 -	308	33864605	-	SYNW0069	-	conserved hypothetical protein	
67	 67.44 +1    67497..69299    	 -	600	33864606	lysC	SYNW0070	-	aspartate kinase	
68	 62.42       69352..69798    	 -	148	33864607	-	SYNW0071	-	conserved hypothetical protein	
69	 62.14       69779..70087    	 -	102	33864608	-	SYNW0072	-	hypothetical protein	
70	 67.91 +1    70142..71107    	 -	321	33864609	-	SYNW0073	-	conserved hypothetical protein	
71	 68.74 +1    71117..71743    	 +	208	33864610	cobH	SYNW0074	-	putative Precorrin-8X methylmutase CobH	
72	 69.33 +1    71712..72761    	 -	349	33864611	-	SYNW0075	-	possible MesJ homolog	
73	 68.38 +1    72760..73518    	 +	252	33864612	-	SYNW0076	-	conserved hypothetical protein	
74	 61.70       73579..75612    	 +	677	33864613	uvrB	SYNW0077	-	excinuclease ABC subunit B	
75	 66.85 +1    75609..78311    	 -	900	33864614	mutS	SYNW0078	-	putative DNA mismatch repair protein	
76	 58.54       78348..79061    	 -	237	33864615	-	SYNW0079	-	hypothetical	
77	 65.19       79065..79604    	 -	179	33864616	-	SYNW0080	-	conserved hypothetical protein	
78	 58.14       79539..79796    	 +	85	33864617	psbZ	SYNW0081	-	possible photosystem II protein PsbZ (ycf9)	
79	 53.00 -1    79853..80335    	 +	160	33864618	ribH	SYNW0082	-	Putative 6,7-dimethyl-8-ribityllumazine synthase or riboflavin synthase beta chain	
80	 47.33 -2    80332..81060    	 +	242	33864619	-	SYNW0083	-	putative deacetylase sulfotransferase	
81	 45.71 -2    81057..82268    	 +	403	33864620	-	SYNW0084	-	Putative glycosyltransferase	
82	 50.84 -1    82533..85040    	 -	835	33864621	swmA	SYNW0085	-	SwmA-cell surface protein required for swimming motility	
83	 59.28       85592..88405    	 +	937	33864622	secA	SYNW0086	-	preprotein translocase SecA subunit	
84	 54.68       88413..89363    	 +	316	33864623	-	SYNW0087	-	conserved hypothetical protein	
85	 58.74       89360..91012    	 +	550	33864624	-	SYNW0088	-	conserved hypothetical protein	
86	 61.39       91067..91843    	 +	258	33864625	-	SYNW0089	-	conserved hypothetical protein	
87	 62.92       91797..92543    	 -	248	33864626	cysE	SYNW0090	-	serine acetyltransferase	
88	 64.27       92554..93555    	 -	333	33864627	-	SYNW0091	-	conserved hypothetical protein	
89	 62.98       93602..94387    	 +	261	33864628	-	SYNW0092	-	possible carboxymethylenebutenolidase	
90	 61.31       94384..95037    	 -	217	33864629	infC	SYNW0093	-	translation initiation factor IF-3	
91	 64.00       95094..95993    	 -	299	33864630	miaA	SYNW0094	-	tRNA delta-2-isopentenylpyrophosphate (IPP) transferase	
92	 56.66       96148..98115    	 +	655	33864631	gyrB	SYNW0095	-	DNA gyrase subunit B	
93	 64.96       98115..98465    	 +	116	33864632	-	SYNW0096	-	conserved hypothetical	
94	 62.73       98446..98826    	 +	126	33864633	-	SYNW0097	-	conserved hypothetical protein	
95	 64.91       98819..99217    	 +	132	33864634	-	SYNW0098	-	conserved hypothetical protein	
96	 63.08       99183..99656    	 -	157	33864635	-	SYNW0099	-	Glutathione peroxidase	
97	 44.30 -2    99682..100593   	 -	303	33864636	-	SYNW0100	-	hypothetical	
98	 62.35      100801..102261   	 +	486	33864637	-	SYNW0101	-	MgtE family, putative magnesium transport protein	
99	 58.86      102314..103312   	 +	332	33864638	-	SYNW0102	-	Type II alternative RNA polymerase sigma factor, sigma-70 family	
100	 46.51 -2   103634..104506   	 +	290	33864639	-	SYNW0103	-	hypothetical	

 
 60.02 MEAN 
 
 6.10  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.