IslandPath Analysis: Staphylococcus aureus subsp. aureus strain MRSA252



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.95   STD DEV: 3.41
Staphylococcus aureus subsp. aureus MRSA252, complete genome - 0..2902619
2656 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 32.89      517..1878     	 +	453	49482254	dnaA	SAR0001	-	chromosomal replication initiator protein DnaA	
2	 32.54        2156..3289     	 +	377	49482255	dnaN	SAR0002	-	DNA polymerase III, beta chain	
3	 35.37        3670..3915     	 +	81	49482256	-	SAR0003	-	conserved hypothetical protein	
4	 33.69        3912..5024     	 +	370	49482257	recF	SAR0004	-	DNA replication and repair protein RecF	
5	 37.06 +1     5037..6968     	 +	643	49482258	gyrB	SAR0005	-	DNA gyrase subunit B	
6	 36.87 +1     7005..9665     	 +	886	49482259	gyrA	SAR0006	-	DNA gyrase subunit A	
7	 36.82 +1     9753..10583    	 -	276	49482260	-	SAR0007	-	conserved hypothetical protein	
8	 36.96 +1    10891..12405    	 +	504	49482261	hutH	SAR0008	-	putative histidine ammonia-lyase	
9	 34.42       12783..14069    	 +	428	49482262	serS	SAR0009	-	seryl-tRNA synthetase	
10	 36.35       14713..15408    	 +	231	49482263	-	SAR0010	-	putative membrane protein	
11	 34.55       15405..15734    	 +	109	49482264	-	SAR0011	-	putative membrane protein	
12	 36.12       16096..17064    	 +	322	49482265	-	SAR0012	-	putative hydrolase	
13	 32.52       17309..18295    	 +	328	49482266	-	SAR0013	-	putative membrane protein	
14	 35.72       18310..20277    	 +	655	49482267	-	SAR0014	-	putative membrane protein	
15	 31.77       20274..20720    	 +	148	49482268	rplI	SAR0015	-	50S ribosomal protein L9	
16	 38.12 +1    20752..22152    	 +	466	49482269	dnaC	SAR0016	-	DnaB-like helicase	
17	 36.37 +1    22430..23713    	 +	427	49482270	purA	SAR0017	-	putative adenylosuccinate synthetase	
18	 36.44 +1    24897..25604    	 +	235	49482271	yycF	SAR0018	-	response regulator protein	
19	 34.87       25617..27443    	 +	608	49482272	yycG	SAR0019	-	sensor kinase protein	
20	 35.21       27436..28770    	 +	444	49482273	yycH	SAR0020	-	putative exported protein	
21	 32.57       28771..29559    	 +	262	49482274	yycI	SAR0021	-	putative exported protein	
22	 36.08       29947..30747    	 +	266	49482275	yycJ	SAR0022	-	metallo-beta-lactamase superfamily protein	
23	 38.54 +1    30932..33292    	 +	786	49482276	sasH	SAR0023	-	putative 5'-nucleotidase	
24	 39.38 +1    33660..34139    	 +	159	49482277	-	SAR0024	-	conserved hypothetical protein	
25	 28.32 -1    34422..35717    	 +	431	49482278	-	SAR0025	-	hypothetical protein	
26	 24.58 -2    36132..36371    	 +	79	49482279	-	SAR0026	-	hypothetical protein	
27	 34.37       36403..37077    	 -	224	49482280	-	SAR0027	-	putative transposase	
28	 29.94       38197..38373    	 -	58	49482281	-	SAR0030	-	hypothetical protein	
29	 33.73       38396..39658    	 -	420	49482282	pre	SAR0031	-	plasmid recombination enzyme	
30	 46.10 +2    39767..39907    	 +	46	49482283	-	SAR0031a	-	hypothetical protein	
31	 36.78 +1    39973..40146    	 +	57	49482284	-	SAR0031b	-	hypothetical protein	
32	 40.49 +2    40165..40569    	 -	134	49482285	ble	SAR0032	-	bleomycin resistance protein	
33	 42.28 +2    40786..41556    	 -	256	49482286	knt	SAR0033	-	kanamycin nucleotidyltransferase	
34	 34.37       41749..42423    	 -	224	49482287	-	SAR0034	-	putative transposase	
35	 35.71       42946..43155    	 +	69	49482288	-	SAR0036	-	putative membrane protein	
36	 33.47       43605..44348    	 +	247	49482289	ugpQ	SAR0037	-	glycerophosphoryl diester phosphodiesterase	
37	 29.14 -1    44445..44873    	 +	142	49482290	-	SAR0038	-	conserved hypothetical protein	
38	 30.59       44919..46925    	 -	668	49482291	mecA	SAR0039	-	penicillin-binding protein 2 prime	
39	 28.67 -1    47025..48782    	 +	585	49482292	mecR1	SAR0040	-	methicillin resistance protein MecR1	
40	 26.67 -1    48782..49126    	 +	114	49482293	mecI	SAR0041	-	methicillin resistance regulatory protein MecI	
41	 25.00 -2    49263..49466    	 +	67	49482294	-	SAR0042	-	hypothetical protein	
42	 32.30       52251..53315    	 -	354	49482295	-	SAR0046	-	hypothetical protein	
43	 24.72 -2    53445..53711    	 +	88	49482296	-	SAR0047	-	conserved hypothetical protein	
44	 34.39       54694..55356    	 -	220	49482297	-	SAR0049	-	hypothetical protein	
45	 32.51       55890..56621    	 +	243	49482298	ermA1	SAR0050	-	rRNA adenine N-6-methyltransferase 1	
46	 36.40 +1    56747..57529    	 -	260	49482299	spc1	SAR0051	-	streptomycin 3''-adenylyltransferase 1	
47	 29.89       57680..58057    	 -	125	49482300	tnpC1	SAR0052	-	transposase C 1	
48	 33.86       58064..59956    	 -	630	49482301	tnpB1	SAR0053	-	transposase B 1	
49	 32.14       59953..61038    	 -	361	49482302	tnpA1	SAR0054	-	transposase A 1	
50	 36.29       61495..62001    	 -	168	49482303	-	SAR0056	-	conserved hypothetical protein	
51	 32.05       62019..62330    	 -	103	49482304	-	SAR0057	-	hypothetical protein	
52	 34.76       62417..62767    	 -	116	49482305	-	SAR0058	-	hypothetical protein	
53	 35.05       63285..64913    	 -	542	49482306	ccrB	SAR0059	-	site-specific recombinase	
54	 34.37       64935..66284    	 -	449	49482307	ccrA	SAR0060	-	site-specific recombinase	
55	 34.06       66518..68311    	 -	597	49482308	-	SAR0061	-	putative membrane protein	
56	 34.68       68311..68607    	 -	98	49482309	-	SAR0062	-	hypothetical protein	
57	 25.12 -2    68800..69846    	 -	348	49482310	-	SAR0063	-	hypothetical protein	
58	 30.79       70924..71238    	 -	104	49482311	-	SAR0066	-	putative transposase	
59	 37.36 +1    73397..74092    	 -	231	49482312	kdpE	SAR0068	-	response regulator protein	
60	 36.57 +1    74067..76787    	 -	906	49482313	-	SAR0069	-	sensor kinase protein	
61	 36.79 +1    77004..78680    	 +	558	49482314	-	SAR0070	-	potassium-transporting ATPase A chain	
62	 39.76 +1    78699..80720    	 +	673	49482315	-	SAR0071	-	potassium-transporting ATPase B chain	
63	 33.56       81837..82706    	 -	289	49482316	-	SAR0074	-	hypothetical protein	
64	 36.68 +1    82716..83612    	 -	298	49482317	-	SAR0075	-	hypothetical protein	
65	 40.48 +2    83654..83779    	 +	41	49482318	-	SAR0075a	-	hypothetical protein	
66	 26.94 -1    83812..84249    	 -	145	49482319	-	SAR0076	-	hypothetical protein	
67	 30.56       84354..84641    	 -	95	49482320	-	SAR0077	-	putative membrane protein	
68	 29.67       84731..85357    	 -	208	49482321	-	SAR0078	-	hypothetical protein	
69	 31.21       85472..86980    	 +	502	49482322	-	SAR0079	-	putative protein kinase	
70	 24.28 -2    87145..89265    	 +	706	49482323	-	SAR0080	-	hypothetical protein	
71	 32.00       89496..89795    	 +	99	49482324	-	SAR0081	-	transposase	
72	 29.12 -1    89837..90643    	 +	268	49482325	-	SAR0082	-	transposase	
73	 29.46 -1    90831..91346    	 +	171	49482326	-	SAR0084	-	hypothetical protein	
74	 33.23       91351..92298    	 -	315	49482327	-	SAR0085	-	putative transposase	
75	 24.80 -2    92484..92858    	 +	124	49482328	-	SAR0086	-	hypothetical protein	
76	 27.93 -1    93145..94848    	 +	567	49482329	-	SAR0087	-	putative restriction enzyme	
77	 24.59 -2    94841..95881    	 +	346	49482330	-	SAR0088	-	putative restriction enzyme modulator protein	
78	 25.25 -2    96110..96208    	 +	32	49482331	-	SAR0089	-	hypothetical protein	
79	 25.79 -2    96312..96470    	 +	52	49482332	-	SAR0090	-	hypothetical protein	
80	 25.00 -2    96778..96909    	 -	43	49482333	-	SAR0091	-	putative insertion sequence protein	
81	 35.29       97309..98280    	 -	323	49482334	-	SAR0092	-	putative hydratase	
82	 30.38       98333..98704    	 -	123	49482335	-	SAR0093	-	putative membrane protein	
83	 35.32       98724..100085   	 -	453	49482336	-	SAR0094	-	putative transporter protein	
84	 27.60 -1   101081..101656   	 +	191	49482337	-	SAR0097	-	putative DNA-binding protein	
85	 28.06 -1   102126..102599   	 +	157	49482338	-	SAR0098	-	acetyltransferase (GNAT) family protein	
86	 38.70 +1   102706..103692   	 -	328	49482339	-	SAR0099	-	conserved hypothetical protein	
87	 23.46 -2   104041..104202   	 +	53	49482340	-	SAR0100	-	putative membrane protein	
88	 30.64      104251..104547   	 +	98	49482341	-	SAR0101	-	hypothetical protein	
89	 29.58      104746..105357   	 +	203	49482342	-	SAR0102	-	putative membrane protein	
90	 31.18      105625..108777   	 +	1050	49482343	-	SAR0103	-	hypothetical protein	
91	 31.26      108860..109342   	 +	160	49482344	-	SAR0104	-	putative membrane protein	
92	 34.04      109547..110533   	 +	328	49482345	plc	SAR0105	-	1-phosphatidylinositol phosphodiesterase	
93	 30.48      110754..111524   	 +	256	49482346	-	SAR0106	-	putative lipoprotein	
94	 33.51      111618..113855   	 +	745	49482347	-	SAR0107	-	putative regulatory protein	
95	 37.49 +1   114006..115184   	 +	392	49482348	-	SAR0108	-	putative peptidase	
96	 36.57 +1   115186..116574   	 +	462	49482349	-	SAR0109	-	putative transporter protein	
97	 35.79      117060..118727   	 -	555	49482350	-	SAR0110	-	putative Na+/Pi-cotransporter protein	
98	 35.42      119046..120821   	 -	591	49482351	-	SAR0111	-	putative myosin-crossreactive antigen	
99	 29.75      121172..121645   	 +	157	49482352	-	SAR0112	-	putative membrane protein	
100	 34.71      121907..123499   	 +	530	49482353	lldP1	SAR0113	-	L-lactate permease 1	

 
 32.95 MEAN 
 
 3.41  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.