IslandPathversion 1.0

IslandPath Analysis: Rickettsia typhi strain wilmington



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.88 STD DEV: 3.61
Rickettsia typhi str. wilmington, complete genome - 0..1111496
838 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 26.76        1..822      	 +	273	51473216	-	RT0001	-	conserved hypothetical protein	
2	 28.30         984..1301     	 +	105	51473217	trxA	RT0002	-	thioredoxin	
3	 27.40        1312..2070     	 +	252	51473218	wzt	RT0003	-	O-antigen export system ATP-binding protein	
4	 26.51        2067..2843     	 +	258	51473219	wzm	RT0004	-	O-antigen export system permease protein	
5	 28.98        2840..5896     	 +	1018	51473220	-	RT0005	-	conserved hypothetical protein	
6	 33.21        6007..6801     	 -	264	51473221	lpxA	RT0006	-	acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase	
7	 33.33        6811..7248     	 -	145	51473222	fabZ	RT0007	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase	
8	 32.85        7429..8469     	 -	346	51473223	lpxD	RT0008	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	
9	 37.80 +2     9295..10278    	 +	327	51473224	-	RT0010	-	NifR3-like protein	
10	 26.54       10275..11348    	 +	357	51473225	-	RT0011	-	conserved hypothetical protein	
11	 26.21 -1    11414..11848    	 -	144	51473226	-	RT0012	-	conserved hypothetical protein	
12	 25.06 -1    11836..12741    	 -	301	51473227	znuA	RT0013	-	probable zinc/manganese ABC transporter substrate binding protein	
13	 26.20 -1    12738..13901    	 -	387	51473228	pcnB	RT0014	-	polynucleotide adenylyltransferase	
14	 30.83       14663..18055    	 +	1130	51473229	sca1	RT0015	-	190 kDa antigen precursor	
15	 31.65       19633..20106    	 -	157	51473230	ruvC	RT0017	-	crossover junction endodeoxyribonuclease RuvC (Holliday junction DNA nuclease RuvC)	
16	 29.39       20165..21052    	 -	295	51473231	-	RT0018	-	Era-like GTP-binding protein	
17	 30.12       21045..21728    	 -	227	51473232	rnc	RT0019	-	ribonuclease III	
18	 29.56       21728..22522    	 -	264	51473233	lepB	RT0020	-	signal peptidase I	
19	 37.44 +2    22711..23976    	 -	421	51473234	nuoF	RT0021	-	NADH dehydrogenase (ubiquinone) subunit F	
20	 29.13       24146..25072    	 -	308	51473235	secF	RT0022	-	protein-export membrane protein SecF	
21	 31.22       25145..25381    	 +	78	51473236	-	RT0023	-	conserved hypothetical protein	
22	 33.33       25526..25942    	 -	138	51473237	rplS	RT0024	-	50S ribosomal protein L19	
23	 35.46 +1    25959..26663    	 -	234	51473238	trmD	RT0025	-	tRNA (guanine-N(1)-)-methyltransferase	
24	 30.74       27080..28237    	 -	385	51473239	ackA	RT0026	-	acetate kinase	
25	 36.48 +1    28239..29288    	 -	349	51473240	pta	RT0027	-	phosphate acetyltransferase	
26	 30.33       29679..33143    	 -	1154	51473241	-	RT0028	-	VirB6-like protein of the type IV secretion system	
27	 29.65       33268..35928    	 -	886	51473242	-	RT0029	-	VirB6-like protein of the type IV secretion system	
28	 31.72       36090..39005    	 -	971	51473243	-	RT0030	-	VirB6-like protein of the type IV secretion system	
29	 32.25       39009..41033    	 -	674	51473244	-	RT0031	-	VirB6-like protein of the type IV secretion system	
30	 32.69       41020..44427    	 -	1135	51473245	-	RT0032	-	VirB6-like protein of the type IV secretion system	
31	 32.59       44546..46963    	 -	805	51473246	virB4a	RT0033	-	VirB4 protein precursor	
32	 29.51       47136..47423    	 -	95	51473247	virB3	RT0034	-	probable type IV secretory system protein VirB3	
33	 28.53       48098..48742    	 -	214	51473248	engB	RT0035	-	probable GTP-binding protein EngB	
34	 29.54       49208..49444    	 -	78	51473249	rpmE	RT0037	-	50S ribosomal protein L31	
35	 31.63       49441..49734    	 -	97	51473250	rpmB	RT0038	-	50S ribosomal protein L28	
36	 25.00 -1    51017..51268    	 -	83	51473251	-	RT0039	-	rickettsial conserved hypothetical protein	
37	 30.57       51270..52028    	 -	252	51473252	mkl	RT0040	-	ribonucleotide ABC transporter ATP-binding protein	
38	 33.59 +1    52034..52813    	 -	259	51473253	-	RT0041	-	ABC transporter permease protein	
39	 32.18       52970..54178    	 -	402	51473254	alr	RT0042	-	alanine racemase	
40	 28.33       54956..55555    	 -	199	51473255	-	RT0043	-	conserved hypothetical protein	
41	 31.61       55575..56330    	 -	251	51473256	vacJ	RT0044	-	lipoprotein precursor	
42	 22.16 -2    56335..57345    	 -	336	51473257	-	RT0045	-	rickettsial conserved hypothetical protein	
43	 32.42       57571..58770    	 +	399	51473258	aatA	RT0046	-	aspartate aminotransferase	
44	 28.01       58889..59545    	 +	218	51473259	-	RT0047	-	conserved hypothetical protein	
45	 28.80       59542..60930    	 +	462	51473260	waaA	RT0048	-	3-deoxy-D-manno-octulosonic-acid transferase	
46	 31.40       62040..62969    	 -	309	51473261	tsf	RT0049	-	elongation factor Ts	
47	 30.52       63126..64013    	 -	295	51473262	rpsB	RT0050	-	30S ribosomal protein S2	
48	 30.79       64418..65791    	 -	457	51473263	cysS	RT0051	-	cysteine-tRNA ligase	
49	 29.49       68152..72603    	 +	1483	51473264	sca2	RT0052	-	190 kDa antigen precursor	
50	 27.39       73210..73512    	 -	100	51473265	secG	RT0053	-	protein-export membrane protein SecG	
51	 30.15       73744..75000    	 -	418	51473266	proP1	RT0055	-	proline/betaine transporter ProP1	
52	 31.98       74987..75871    	 -	294	51473267	-	RT0056	-	conserved hypothetical protein	
53	 31.67       76015..76737    	 +	240	51473268	-	RT0057	-	OmpW-like outer membrane protein	
54	 33.69 +1    76866..78263    	 +	465	51473269	pntB	RT0058	-	NAD(P)(+) transhydrogenase (B-specific) beta subunit	
55	 32.44       78320..78880    	 +	186	51473270	-	RT0059	-	conserved hypothetical protein	
56	 27.47       79064..79882    	 -	272	51473271	-	RT0060	-	conserved hypothetical protein	
57	 32.07       79886..80599    	 -	237	51473272	czcR	RT0061	-	transcriptional activator protein CzcR	
58	 29.85       80782..81240    	 -	152	51473273	secB	RT0062	-	protein-export protein SecB	
59	 31.75       81429..81995    	 -	188	51473274	dcd	RT0063	-	dCTP deaminase	
60	 33.18       82266..83588    	 +	440	51473275	-	RT0064	-	rickettsial conserved hypothetical protein	
61	 32.48       84353..86566    	 -	737	51473276	parC	RT0065	-	DNA topoisomerase IV subunit A	
62	 28.70       86701..87348    	 -	215	51473277	-	RT0066	-	rickettsial conserved hypothetical protein	
63	 31.77       87419..89149    	 -	576	51473278	argS	RT0067	-	arginine-tRNA ligase	
64	 29.18       89158..90312    	 -	384	51473279	dgtP	RT0068	-	deoxyguanosinetriphosphate triphosphohydrolase	
65	 32.73       90567..90899    	 +	110	51473280	iscA1	RT0069	-	iron-binding protein IscA/HesB	
66	 32.24       92301..93125    	 -	274	51473281	kdsA	RT0070	-	3-deoxy-8-phosphooctulonate synthase	
67	 20.51 -2    93161..93472    	 -	103	51473282	-	RT0071	-	rickettsial conserved hypothetical protein	
68	 29.80       93475..95142    	 -	555	51473283	-	RT0072	-	ABC transporter ATP-binding protein	
69	 26.83       95319..96179    	 -	286	51473284	parB	RT0073	-	chromosome partitioning protein ParB (Spo0J protein)	
70	 27.73       96166..96933    	 -	255	51473285	parA	RT0074	-	chromosome partitioning protein ParA (Soj protein)	
71	 23.44 -1    96930..97505    	 -	191	51473286	gidB	RT0075	-	glucose inhibited division protein B	
72	 30.98       97489..99354    	 -	621	51473287	gidA	RT0076	-	glucose inhibited division protein A	
73	 30.50       99358..99780    	 -	140	51473288	ndk	RT0077	-	nucleoside-diphosphate kinase	
74	 34.34 +1    99919..101208   	 -	429	51473289	glpT	RT0078	-	glycerol-3-phosphate transporter	
75	 29.33      101278..102774   	 -	498	51473290	tlcA	RT0079	-	ADP/ATP carrier protein 1	
76	 27.78      104846..105241   	 +	131	51473291	-	RT0080	-	rickettsial conserved hypothetical protein	
77	 27.56      105814..106350   	 -	178	51473292	pgsA	RT0081	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase	
78	 28.92      106350..108026   	 -	558	51473293	yidC	RT0082	-	60 kDa inner membrane protein	
79	 26.05 -1   108196..109362   	 -	388	51473294	-	RT0083	-	conserved hypothetical protein	
80	 28.08      109598..110377   	 +	259	51473295	lgt	RT0084	-	prolipoprotein diacylglyceryl transferase	
81	 28.97      110356..111432   	 +	358	51473296	-	RT0085	-	conserved hypothetical protein	
82	 34.86 +1   111886..112671   	 -	261	51473297	sdhB	RT0086	-	succinate dehydrogenase iron-sulfur protein	
83	 35.84 +1   112910..114823   	 -	637	51473298	ftsH	RT0087	-	cell division protein FtsH	
84	 26.84      114874..116166   	 -	430	51473299	mesJ	RT0088	-	probable cell cycle ATPase MesJ	
85	 30.43      116339..116854   	 -	171	51473300	rplI	RT0089	-	50S ribosomal protein L9	
86	 29.86      116866..117153   	 -	95	51473301	rpsR	RT0090	-	30S ribosomal protein S18	
87	 26.50      117178..117543   	 -	121	51473302	rpsF	RT0091	-	30S ribosomal protein S6	
88	 29.04      118420..119607   	 +	395	51473303	aco1	RT0092	-	stearoyl-CoA 9-desaturase 1	
89	 31.79      119725..120888   	 +	387	51473304	gcp	RT0093	-	O-sialoglycoprotein endopeptidase	
90	 33.68 +1   121536..124112   	 -	858	51473305	clpB	RT0094	-	ATP-binding ClpB chaperone	
91	 33.33      125155..125880   	 +	241	51473306	phbB	RT0095	-	acetoacetyl-CoA reductase	
92	 30.84      126476..127798   	 +	440	51473307	-	RT0096	-	rickettsial conserved hypothetical protein	
93	 23.86 -1   128082..128672   	 -	196	51473308	-	RT0097	-	conserved hypothetical protein	
94	 30.70      128733..129302   	 +	189	51473309	-	RT0098	-	conserved hypothetical protein	
95	 29.24      131548..132207   	 +	219	51473310	-	RT0099	-	rickettsial conserved hypothetical protein	
96	 28.35      134379..135461   	 +	360	51473311	recF	RT0100	-	DNA replication and repair protein RecF	
97	 30.09      135704..137308   	 +	534	51473312	-	RT0101	-	conserved hypothetical protein	
98	 33.52 +1   137564..138097   	 -	177	51473313	-	RT0102	-	conserved hypothetical protein	
99	 28.66      138255..139067   	 +	270	51473314	-	RT0103	-	conserved hypothetical protein	
100	 27.31      139126..139374   	 +	82	51473315	-	RT0104	-	rickettsial conserved hypothetical protein	

 
 29.88 MEAN 
 
 3.61  STD DEV 



Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.