IslandPath Analysis: Rhodopseudomonas palustris CGA009



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.23   STD DEV: 3.17
Rhodopseudomonas palustris CGA009, complete genome - 0..5459213
4813 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 65.61      679..2097     	 +	472	39933081	dnaA	RPA0001	-	chromosomal replication initiator protein DnaA	
2	 64.88        2332..3450     	 +	372	39933082	dnaN	RPA0002	-	DNA polymerase III beta subunit	
3	 68.98 +1     3667..4833     	 +	388	39933083	recF	RPA0003	-	putative RecF protein	
4	 64.74        5050..7491     	 +	813	39933084	gyrB	RPA0004	-	DNA gyrase subunit B	
5	 62.82        7673..8791     	 -	372	39933085	hpd	RPA0005	-	4-hydroxyphenylpyruvate dioxygenase	
6	 63.12        8917..9396     	 +	159	39933086	-	RPA0006	-	transcriptional regulator, AsnC family	
7	 67.56        9442..10893    	 -	483	39933087	-	RPA0007	-	putative signal transduction histidine kinase with PAS/PAC domains	
8	 61.05 -1    10890..11174    	 -	94	39933088	kaiB	RPA0008	-	circadian clock protein	
9	 63.36       11184..12875    	 -	563	39933089	kaiC	RPA0009	-	circadian clock protein	
10	 62.35       13269..13778    	 -	169	39933090	-	RPA0010	-	possible glutamate uptake transcriptional regulator, AsnC family	
11	 71.08 +1    14266..14514    	 -	82	39933091	-	RPA0011	-	conserved hypothetical protein	
12	 64.52       14516..14701    	 -	61	39933092	rdxS	RPA0012	-	possible fixS	
13	 67.08       14692..16890    	 -	732	39933093	rdxI	RPA0013	-	putative cation (heavy metal) transporting ATPase	
14	 64.88       16925..17428    	 -	167	39933094	rdxH	RPA0014	-	conserved hypothetical protein	
15	 63.10       17445..18902    	 -	485	39933095	fixG	RPA0015	-	4Fe-4S ferredoxin, iron-sulfur binding domain	
16	 63.61       19019..19900    	 -	293	39933096	ccoP	RPA0016	-	cytochrome-c oxidase fixP chain	
17	 56.97 -2    19908..20072    	 -	54	39933097	ccoQ	RPA0017	-	cytochrome oxidase subunit, small membrane protein	
18	 61.63 -1    20082..20816    	 -	244	39933098	ccoO	RPA0018	-	cytochrome-c oxidase fixO chain	
19	 62.17       20829..22475    	 -	548	39933099	ccoN	RPA0019	-	cytochrome-c oxidase fixN chain, heme and copper binding subunit	
20	 67.21       22786..23706    	 -	306	39933100	panE1	RPA0020	-	Ketopantoate reductase ApbA/PanE	
21	 65.18       23779..24516    	 -	245	39933101	-	RPA0021	-	possible short chain dehydrogenase	
22	 62.19       24637..25239    	 -	200	39933102	-	RPA0022	-	DSBA oxidoreductase	
23	 64.30       25362..26123    	 +	253	39933103	gstA3	RPA0023	-	possible glutathione transferase	
24	 64.95       26235..27110    	 -	291	39933104	-	RPA0024	-	Short-chain dehydrogenase/reductase SDR	
25	 67.76       27385..29118    	 -	577	39933105	ggt1	RPA0025	-	gamma-glutamyltranspeptidase	
26	 65.67       29224..30621    	 +	465	39933106	-	RPA0026	-	Major Facilitator Superfamily (MFS) transporter	
27	 65.66       30837..31931    	 +	364	39933107	aroG1	RPA0027	-	2-dehydro-3-deoxyphosphoheptonate aldolase	
28	 66.54       31989..33581    	 -	530	39933108	purH	RPA0028	-	bifunctional purine biosynthesis protein	
29	 67.94       33767..35653    	 -	628	39933109	-	RPA0029	-	conserved hypothetical protein	
30	 68.96 +1    35820..37172    	 -	450	39933110	-	RPA0030	-	Bacterial Sun/eukaryotic nucleolar Nop1/Nop2	
31	 64.84       37325..37543    	 +	72	39933111	-	RPA0031	-	conserved hypothetical protein	
32	 69.44 +1    37629..38204    	 +	191	39933112	-	RPA0032	-	possible Staphylococcal nuclease homologues	
33	 64.63       38208..39092    	 -	294	39933113	-	RPA0033	-	conserved hypothetical protein	
34	 70.71 +1    39440..40897    	 +	485	39933114	-	RPA0034	-	possible flavin containing amine oxidase	
35	 66.96       40904..43315    	 -	803	39933115	pheT	RPA0035	-	putative phenylalanine-tRNA ligase beta chain	
36	 64.38       43460..43939    	 -	159	39933116	-	RPA0036	-	conserved unknown protein	
37	 64.82       44200..45282    	 -	360	39933117	pheS	RPA0037	-	phenylalanyl-tRNA synthetase, alpha-subunit	
38	 63.33       45426..45785    	 -	119	39933118	rplT	RPA0038	-	ribosomal protein L20	
39	 57.21 -2    45869..46069    	 -	66	39933119	rpmI	RPA0039	-	50S ribosomal protein L35	
40	 57.51 -2    46403..46981    	 -	192	39933120	infC	RPA0040	-	translation initiation factor IF-3	
41	 68.58 +1    47263..48048    	 +	261	39933121	-	RPA0041	-	conserved unknown protein	
42	 68.10       48211..49323    	 -	370	39933122	-	RPA0042	-	possible iron-sulfur cluster binding protein	
43	 65.80       49368..50060    	 -	230	39933123	-	RPA0043	-	possible glutathione S-transferase	
44	 61.21 -1    50260..51066    	 +	268	39933124	bacA	RPA0044	-	bacitracin resistance protein	
45	 67.49       51116..52081    	 -	321	39933125	-	RPA0045	-	putative NADH dehydrogenase (ubiquinone) 1 alpha subcomplex	
46	 64.88       52495..53109    	 +	204	39933126	-	RPA0046	-	3'-5' exonuclease	
47	 65.72       53339..54079    	 +	246	39933127	-	RPA0047	-	conserved hypothetical protein	
48	 65.62       54088..54753    	 +	221	39933128	-	RPA0048	-	conserved hypothetical protein	
49	 66.46       54870..55835    	 +	321	39933129	-	RPA0049	-	possible ABC transporter ATP-binding protein (in rpoN upstream)	
50	 64.24       56042..57688    	 +	548	39933130	rpoN	RPA0050	-	RNA polymerase sigma 54 subunit, RpoN	
51	 63.70       57746..58351    	 +	201	39933131	-	RPA0051	-	putative sigma-54 modulation protein	
52	 67.75       58627..59088    	 +	153	39933132	ptsN1	RPA0052	-	putative nitrogen regulatory IIA protein	
53	 63.30       59691..59957    	 -	88	39933133	-	RPA0053	-	conserved hypothetical protein	
54	 57.98 -2    60008..60433    	 -	141	39933134	-	RPA0054	-	putative small heat shock protein	
55	 66.12       60587..61678    	 -	363	39933135	ugpC	RPA0055	-	ATP-binding component of sn-glycerol 3-phosphate transport system	
56	 61.48 -1    61681..62529    	 -	282	39933136	ugpE	RPA0056	-	sn-glycerol 3-phosphate transport system, integral membrane protein	
57	 60.66 -1    62529..63410    	 -	293	39933137	ugpA	RPA0057	-	sn-glycerol-3-phosphate transport system permease protein	
58	 62.75       63575..64903    	 -	442	39933138	ugpB1	RPA0058	-	putative sn-glycerol 3-phosphate transport system; periplasmic binding protein	
59	 65.17       65126..66331    	 -	401	39933139	-	RPA0059	-	L-carnitine dehydratase/bile acid-inducible protein F	
60	 59.70 -1    66656..67057    	 -	133	39933140	-	RPA0060	-	conserved unknown protein	
61	 68.01       67198..68535    	 +	445	39933141	aroA	RPA0061	-	3-phosphoshikimate 1-carboxyvinyltransferase	
62	 65.33       68539..69213    	 -	224	39933142	-	RPA0062	-	conserved unknown protein	
63	 67.14       69377..70015    	 +	212	39933143	cmk	RPA0063	-	cytidylate monophosphate kinase	
64	 62.84       70316..72013    	 +	565	39933144	rpsA	RPA0064	-	ribosomal protein S1	
65	 65.65       72242..73222    	 +	326	39933145	sppA	RPA0065	-	putative protease IV	
66	 61.27 -1    73388..73702    	 +	104	39933146	ihfB	RPA0066	-	integration host factor beta chain	
67	 68.48 +1    73740..74126    	 +	128	39933147	-	RPA0067	-	conserved unknown protein	
68	 67.76       74185..74826    	 +	213	39933148	trpF	RPA0068	-	putative N-(5'-phosphoribosyl)anthranilate isomerase	
69	 65.35       74840..76054    	 +	404	39933149	trpB	RPA0069	-	tryptophan synthase beta chain	
70	 68.34       76054..76890    	 +	278	39933150	trpA	RPA0070	-	tryptophan synthase alpha subunit	
71	 66.67       77000..77983    	 +	327	39933151	accD	RPA0071	-	acetyl-CoA carboxylase carboxyltransferase beta subunit	
72	 69.75 +1    77980..79308    	 +	442	39933152	folC	RPA0072	-	putative folylpolyglutamate synthase / dihydrofolate synthase	
73	 63.55       79484..79804    	 -	106	39933153	trxA	RPA0073	-	thioredoxin	
74	 68.47 +1    79901..83386    	 -	1161	39933154	-	RPA0074	-	Possible exonuclease V and helicase activity based on COG assignment	
75	 68.67 +1    83383..86532    	 -	1049	39933155	-	RPA0075	-	conserved hypothetical protein	
76	 67.22       86608..87330    	 -	240	39933156	-	RPA0076	-	Nucleotidyl transferase	
77	 62.46       87488..87796    	 -	102	39933157	-	RPA0077	-	conserved hypothetical protein	
78	 68.24       87900..89420    	 -	506	39933158	-	RPA0078	-	Protein of unknown function UPF0079	
79	 66.43       89417..91963    	 -	848	39933159	-	RPA0079	-	sensor histidine kinase with multiple PAS domains	
80	 68.85 +1    92150..92608    	 -	152	39933160	dut	RPA0080	-	putative deoxyuridine 5'triphosphate nucleotidohydrolase	
81	 69.93 +1    92605..93951    	 -	448	39933161	coaBC	RPA0081	-	pantothenate metabolism flavoprotein	
82	 67.43       94104..95681    	 -	525	39933162	ubiB	RPA0082	-	ubiquinone biosynthesis protein AarF, a gene required for the first monooxygenase step in CoQ biosynthesis, recently renamed ubiB	
83	 62.47       95678..96439    	 -	253	39933163	ubiE	RPA0083	-	ubiquinone/menaquinone biosynthesis methlytransferase ubiE	
84	 67.12       96685..97560    	 +	291	39933164	mutM	RPA0084	-	formamidopyrimidine-DNA glycosylase	
85	 67.56       97588..98931    	 -	447	39933165	-	RPA0085	-	unknown protein	
86	 67.67       99139..99939    	 +	266	39933166	moeB	RPA0086	-	putative molybdenum cofactor biosynthesis protein	
87	 69.15 +1   100064..101752   	 +	562	39933167	-	RPA0087	-	putative Major Facilitator Superfamily (MFS) transporter	
88	 64.84      101883..102101   	 -	72	39933168	-	RPA0088	-	unknown protein	
89	 57.89 -2   102225..102566   	 -	113	39933169	-	RPA0089	-	conserved unknown protein	
90	 63.70      102804..103208   	 -	134	39933170	-	RPA0090	-	hypothetical protein	
91	 66.37      103287..103628   	 -	113	39933171	-	RPA0091	-	hypothetical protein	
92	 60.14 -1   104169..104444   	 -	91	39933172	-	RPA0092	-	conserved hypothetical protein	
93	 64.81      104575..105222   	 +	215	39933173	-	RPA0093	-	transcriptional regulator, TetR family	
94	 68.19      105219..106136   	 +	305	39933174	-	RPA0094	-	hypothetical protein	
95	 69.81 +1   106266..107411   	 +	381	39933175	-	RPA0095	-	putative multidrug efflux membrane fusion protein	
96	 66.29      107415..110564   	 +	1049	39933176	-	RPA0096	-	putative multidrug-efflux transport protein	
97	 67.88      110707..111117   	 +	136	39933177	-	RPA0097	-	putative flagellar basal-body rod protein flgC	
98	 67.42      111260..112318   	 -	352	39933178	oppF	RPA0098	-	oligopeptide ABC transporter (ATP-binding protein)	
99	 67.37      112315..113313   	 -	332	39933179	oppD	RPA0099	-	putative oligopeptide ABC transporter (ATP-binding protein)	
100	 68.59 +1   113316..114197   	 -	293	39933180	oppC	RPA0100	-	putative ABC transporter permease protein	

 
 65.23 MEAN 
 
 3.17  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.