IslandPath Analysis: Prochlorococcus marinus CCMP1378



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.44   STD DEV: 4.23
Prochlorococcus marinus subsp. pastoris str. CCMP1986, complete genome - 0..1657990
1712 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 29.27      174..1331     	 +	385	33860561	dnaN	PMM0001	-	DNA polymerase III, beta chain	
2	 27.82        1333..2040     	 +	235	33860562	-	PMM0002	-	conserved hypothetical protein	
3	 32.35        2044..4383     	 +	779	33860563	purL	PMM0003	-	phosphoribosylformylglycinamidine synthetase II	
4	 32.10        4430..5890     	 +	486	33860564	purF	PMM0004	-	Glutamine amidotransferase class-II:Phosphoribosyl transferase	
5	 28.21        5887..8328     	 -	813	33860565	-	PMM0005	-	DNA gyrase/topoisomerase IV, subunit A	
6	 24.68 -1     8416..9270     	 -	284	33860566	-	PMM0006	-	conserved hypothetical protein	
7	 30.90        9275..10219    	 -	314	33860567	-	PMM0007	-	conserved hypothetical protein	
8	 32.79       10367..11104    	 +	245	33860568	-	PMM0008	-	conserved hypothetical protein	
9	 29.84       11105..11734    	 +	209	33860569	nusB	PMM0009	-	Antitermination protein NusB	
10	 32.88       11793..13115    	 +	440	33860570	ftsY	PMM0010	-	signal recognition particle docking protein FtsY	
11	 27.98       13183..14526    	 +	447	33860571	-	PMM0011	-	Protein phosphatase 2C domain	
12	 31.52       14585..15964    	 +	459	33860572	argH	PMM0012	-	Fumarate lyase:Delta crystallin	
13	 46.10 +2    16018..16683    	 +	221	33860573	-	PMM0013	-	RNA-binding region RNP-1 (RNA recognition motif)	
14	 31.34       16680..17684    	 -	334	33860574	-	PMM0014	-	conserved hypothetical protein	
15	 34.34       17712..18206    	 +	164	33860575	-	PMM0015	-	Domain of unknown function DUF25	
16	 32.92       18283..19002    	 +	239	33860576	grpE	PMM0016	-	Heat shock protein GrpE	
17	 37.96 +1    19034..20158    	 +	374	33860577	dnaJ	PMM0017	-	DnaJ protein	
18	 26.50 -1    20155..20388    	 +	77	33860578	-	PMM0018	-	conserved hypothetical protein	
19	 28.43       20378..21295    	 +	305	33860579	-	PMM0019	-	conserved hypothetical protein	
20	 32.19       21261..21611    	 -	116	33860580	-	PMM0020	-	conserved hypothetical protein	
21	 29.41       21634..22524    	 -	296	33860581	murB	PMM0021	-	UDP-N-acetylenolpyruvoylglucosamine reductase	
22	 26.30 -1    22532..23953    	 -	473	33860582	murC	PMM0022	-	Probable UDP-N-acetylmuramate-alanine ligase	
23	 36.46 +1    24150..25172    	 +	340	33860583	gap2	PMM0023	-	Glyceraldehyde 3-phosphate dehydrogenase(NADP+)(phosphorylating)	
24	 29.99       25173..26159    	 -	328	33860584	thiL	PMM0024	-	putative thiamine-monophosphate kinase	
25	 33.52       26152..27243    	 -	363	33860585	-	PMM0025	-	Cyclophilin-type peptidyl-prolyl cis-trans isomerase	
26	 36.72 +1    27287..27847    	 +	186	33860586	efp	PMM0026	-	Elongation factor P (EF-P)	
27	 35.11       27847..28353    	 +	168	33860587	accB,fabE	PMM0027	-	Biotin / Lipoyl attachment:Acetyl-CoA biotin carboxyl carrier...	
28	 31.60       28330..29370    	 -	346	33860588	pdxA	PMM0028	-	putative pyridoxal phosphate biosynthetic protein PdxA	
29	 29.84       29363..30250    	 -	295	33860589	-	PMM0029	-	conserved hypothetical protein	
30	 23.02 -1    30235..30525    	 +	96	33860590	-	PMM0030	-	possible Transcription factor TFIID (or TATA-b	
31	 34.57       30526..30930    	 -	134	33860591	-	PMM0031	-	HNH endonuclease:HNH nuclease	
32	 34.29       31101..31520    	 -	139	33860592	-	PMM0032	-	possible Bacterial type II secretion system pr	
33	 38.21 +1    31579..32091    	 -	170	33860593	-	PMM0033	-	conserved hypothetical protein	
34	 33.84       32335..32532    	 +	65	33860594	-	PMM0034	-	conserved hypothetical protein	
35	 32.38       32543..33697    	 -	384	33860595	DHSS	PMM0035	-	soluble hydrogenase small subunit	
36	 28.87       33758..34876    	 +	372	33860596	-	PMM0036	-	CbiD protein	
37	 33.33       34925..36511    	 +	528	33860597	guaA	PMM0037	-	Glutamine amidotransferase class-I:GMP synthase	
38	 27.17 -1    36556..37269    	 +	237	33860598	-	PMM0038	-	hypothetical	
39	 33.00       37360..37968    	 +	202	33860599	-	PMM0039	-	conserved hypothetical protein	
40	 31.55       38231..40021    	 +	596	33860600	-	PMM0040	-	Putative penicillin-binding protein	
41	 29.33       40052..40576    	 -	174	33860601	-	PMM0041	-	possible reductase	
42	 32.00       40595..42397    	 -	600	33860602	-	PMM0042	-	flavoprotein	
43	 34.12       42415..44190    	 -	591	33860603	-	PMM0043	-	flavoprotein	
44	 32.88       44305..46965    	 +	886	33860604	alaS	PMM0044	-	Alanyl-tRNA synthetase	
45	 29.94       46950..48896    	 -	648	33860605	-	PMM0045	-	Orn/DAP/Arg decarboxylases family 2	
46	 35.95 +1    49017..49475    	 +	152	33860606	-	PMM0046	-	Nucleoside diphosphate kinase	
47	 32.88       49482..50591    	 -	369	33860607	thiO	PMM0047	-	PUTATIVE THIAMINE BIOSYNTHESIS OXIDOREDUCTASE	
48	 34.35       50672..52144    	 +	490	33860608	gatB	PMM0048	-	Glutamyl-tRNA (Gln) amidotransferase subunit B	
49	 26.50 -1    52148..52762    	 -	204	33860609	coaE	PMM0049	-	putative dephospho-CoA kinase	
50	 32.51       52867..54075    	 +	402	33860610	argJ	PMM0050	-	ArgJ family	
51	 39.58 +1    54244..54915    	 -	223	33860611	-	PMM0051	-	conserved hypothetical protein	
52	 29.28       55066..56028    	 +	320	33860612	-	PMM0052	-	Aldo/keto reductase family	
53	 29.60       56663..57787    	 +	374	33860613	-	PMM0053	-	Putative RNA methylase family UPF0020	
54	 30.75       57789..58175    	 -	128	33860614	-	PMM0054	-	conserved hypothetical protein	
55	 31.17       58176..58637    	 -	153	33860615	-	PMM0055	-	conserved hypothetical protein	
56	 27.55       59051..59413    	 +	120	33860616	-	PMM0056	-	conserved hypothetical protein	
57	 30.49       59496..63080    	 +	1194	33860617	-	PMM0057	-	putative chromosome segregation protein, SMC ATPase superfamily	
58	 36.58 +1    63132..64148    	 +	338	33860618	-	PMM0058	-	conserved hypothetical protein	
59	 28.99       64160..65449    	 -	429	33860619	-	PMM0059	-	conserved hypothetical protein	
60	 37.04 +1    65841..67190    	 +	449	33860620	accC	PMM0060	-	acetyl-CoA carboxylase, biotin carboxylase subunit	
61	 29.74       67208..67513    	 -	101	33860621	-	PMM0061	-	YGGT family, conserved hypothetical integral membrane protein	
62	 42.55 +2    67652..67792    	 +	46	33860622	psbX	PMM0062	-	photosystem II PsbX protein	
63	 36.12 +1    67870..68802    	 +	310	33860623	-	PMM0063	-	conserved hypothetical protein	
64	 26.92 -1    68803..69036    	 -	77	33860624	hli2	PMM0064	-	possible high light inducible protein	
65	 31.97       69046..71028    	 -	660	33860625	-	PMM0065	-	ABC transporter, ATP binding protein	
66	 27.43       71066..71353    	 -	95	33860626	-	PMM0066	-	conserved hypothetical protein	
67	 32.75       71401..71742    	 -	113	33860627	-	PMM0067	-	HIT (Histidine triad) family protein	
68	 32.18       71763..72368    	 -	201	33860628	def	PMM0068	-	putative formylmethionine deformylase	
69	 28.62       72448..74376    	 +	642	33860629	-	PMM0069	-	Esterase/lipase/thioesterase family active site	
70	 30.44       74373..75650    	 -	425	33860630	-	PMM0070	-	putative cysteine desulfurase or selenocysteine lyase	
71	 27.26       75650..76867    	 -	405	33860631	-	PMM0071	-	ABC transporter, membrane component	
72	 32.19       76872..77657    	 -	261	33860632	-	PMM0072	-	ABC transporter, ATP binding component	
73	 35.27       77679..79121    	 -	480	33860633	-	PMM0073	-	ABC transporter, membrane component	
74	 28.37       79219..79581    	 +	120	33860634	-	PMM0074	-	conserved hypothetical	
75	 34.78       79845..80951    	 +	368	33860635	-	PMM0075	-	conserved hypothetical protein	
76	 31.50       81171..82808    	 +	545	33860636	pgm	PMM0076	-	Phosphoglucomutase	
77	 31.86       82844..84133    	 +	429	33860637	yrvN	PMM0077	-	putative ATPase, AAA family	
78	 29.53       84130..84786    	 -	218	33860638	-	PMM0078	-	possible 4'-phosphopantetheinyl transferase family protein	
79	 29.06       84786..85253    	 +	155	33860639	bcp	PMM0079	-	putative bacterioferritin comigratory (BCP) protein	
80	 32.16       85259..85939    	 -	226	33860640	-	PMM0080	-	conserved hypothetical protein	
81	 31.95       85958..86680    	 -	240	33860641	cysH	PMM0081	-	Phosphoadenosine phosphosulfate reductase	
82	 29.11       86776..87960    	 +	394	33860642	-	PMM0082	-	putative NADH dehydrogenase, transport associated	
83	 34.33       88020..89828    	 +	602	33860643	-	PMM0083	-	putative sodium/sulfate transporter, DASS family	
84	 30.98       89838..91241    	 +	467	33860644	-	PMM0084	-	possible sodium transporter, Trk family	
85	 34.75       91260..91964    	 +	234	33860645	-	PMM0085	-	putative potassium channel, VIC family	
86	 35.60       91965..92273    	 -	102	33860646	-	PMM0086	-	Conserved hypothetical protein	
87	 30.68       92390..92728    	 +	112	33860647	-	PMM0087	-	conserved hypothetical protein	
88	 32.90       92764..92994    	 +	76	33860648	-	PMM0088	-	conserved hypothetical protein	
89	 29.57       93215..94837    	 +	540	33860649	-	PMM0089	-	ABC transporter, ATP binding component	
90	 30.29       95155..96303    	 -	382	33860650	-	PMM0090	-	possible serine protease	
91	 30.68       96452..96715    	 +	87	33860651	-	PMM0091	-	conserved hypothetical protein	
92	 38.78 +1    96820..97131    	 +	103	33860652	-	PMM0092	-	conserved hypothetical protein	
93	 34.69       97200..97346    	 +	48	33860653	hli1	PMM0093	-	possible high light inducible protein	
94	 25.38 -1    97375..97701    	 -	108	33860654	-	PMM0094	-	conserved hypothetical protein	
95	 34.52       97734..98660    	 -	308	33860655	-	PMM0095	-	similar to serum resistance locus BrkB	
96	 32.83       98735..99532    	 -	265	33860656	-	PMM0096	-	inositol monophosphate family protein	
97	 26.35 -1    99535..100965   	 -	476	33860657	-	PMM0097	-	possible RND family outer membrane efflux protein	
98	 29.58      100958..102370   	 -	470	33860658	-	PMM0098	-	possible Fe-S oxidoreductase	
99	 32.81      102557..103324   	 +	255	33860659	-	PMM0099	-	conserved hypothetical protein	
100	 34.89      103324..104991   	 +	555	33860660	nadB	PMM0100	-	L-aspartate oxidase	

 
 31.44 MEAN 
 
 4.23  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.