IslandPath Analysis: Prochlorococcus marinus MIT9313



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.74   STD DEV: 4.82
Prochlorococcus marinus str. MIT 9313, complete genome - 0..2410873
2265 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 45.33      174..1340     	 +	388	33862274	dnaN	PMT0001	-	DNA polymerase III, beta chain	
2	 48.58        1380..2120     	 +	246	33862275	-	PMT0002	-	conserved hypothetical protein	
3	 45.58 -1     2178..4562     	 +	794	33862276	purL	PMT0003	-	phosphoribosylformylglycinamide synthetase II	
4	 42.39 -1     4622..6079     	 +	485	33862277	purF	PMT0004	-	Glutamine amidotransferase class-II:Phosphoribosyl transferase	
5	 47.83        6115..8604     	 -	829	33862278	-	PMT0005	-	DNA gyrase/topoisomerase IV, subunit A	
6	 51.01        8682..9575     	 -	297	33862279	-	PMT0006	-	conserved hypothetical protein	
7	 51.18        9585..10559    	 -	324	33862280	-	PMT0007	-	conserved hypothetical protein	
8	 51.22       10646..11260    	 +	204	33862281	-	PMT0008	-	unnamed protein product	
9	 47.73       11333..12082    	 +	249	33862282	-	PMT0009	-	conserved hypothetical protein	
10	 47.53       12079..12747    	 +	222	33862283	nusB	PMT0010	-	Antitermination protein NusB	
11	 49.69       12747..14201    	 +	484	33862284	ftsY	PMT0011	-	signal recognition particle docking protein FtsY	
12	 52.64       14264..15667    	 +	467	33862285	-	PMT0012	-	Protein phosphatase 2C domain	
13	 50.39       15697..17109    	 +	470	33862286	argH	PMT0013	-	Fumarate lyase:Delta crystallin	
14	 60.50 +1    17233..17832    	 +	199	33862287	-	PMT0014	-	RNA-binding region RNP-1 (RNA recognition motif)	
15	 53.04       17842..18861    	 -	339	33862288	-	PMT0015	-	conserved hypothetical protein	
16	 51.68       18916..19422    	 +	168	33862289	-	PMT0016	-	Domain of unknown function DUF25	
17	 54.80       19349..20671    	 +	440	33862290	-	PMT0017	-	conserved hypohetical protein	
18	 48.40       20646..21926    	 -	426	33862291	pilC	PMT0018	-	pili biogenesis protein	
19	 50.88       21943..23019    	 -	358	33862292	pilT1	PMT0019	-	homologous to PilT1 protein	
20	 52.84       23030..24946    	 -	638	33862293	gspE1	PMT0020	-	General secretion pathway protein E	
21	 52.80       24945..25658    	 +	237	33862294	grpE	PMT0021	-	Heat shock protein GrpE	
22	 51.63       25703..26839    	 +	378	33862295	dnaJ	PMT0022	-	DnaJ protein	
23	 52.03       26836..27081    	 +	81	33862296	-	PMT0023	-	conserved hypothetical protein	
24	 53.93       27068..28033    	 +	321	33862297	-	PMT0024	-	conserved hypothetical protein	
25	 54.97       27990..28331    	 -	113	33862298	-	PMT0025	-	conserved hypothetical protein	
26	 54.76       28356..29279    	 -	307	33862299	murB	PMT0026	-	UDP-N-acetylenolpyruvoylglucosamine reductase	
27	 52.62       29255..30721    	 -	488	33862300	murC	PMT0027	-	Probable UDP-N-acetylmuramate-alanine ligase	
28	 49.51       30785..31915    	 +	376	33862301	gap2	PMT0028	-	Glyceraldehyde 3-phosphate dehydrogenase(NADP+; phosphorylating)	
29	 54.67       32003..32986    	 -	327	33862302	thiL	PMT0029	-	putative thiamine monophosphate kinase	
30	 49.68       32997..34079    	 -	360	33862303	-	PMT0030	-	Cyclophilin-type peptidyl-prolyl cis-trans isomerase	
31	 49.55       34145..34705    	 +	186	33862304	efp	PMT0031	-	Elongation factor P (EF-P)	
32	 53.74       34705..35199    	 +	164	33862305	accB	PMT0032	-	Biotin / Lipoyl attachment:Acetyl-CoA biotin carboxyl carrier...	
33	 54.65       35200..36231    	 -	343	33862306	pdxA	PMT0033	-	putative pyridoxal phosphate biosynthetic protein PdxA	
34	 53.31       36414..37334    	 -	306	33862307	-	PMT0034	-	conserved hypothetical protein	
35	 52.85       37343..37588    	 +	81	33862308	-	PMT0035	-	possible Squash family serine protease inhibit	
36	 49.50       37596..37997    	 -	133	33862309	-	PMT0036	-	HNH endonuclease:HNH nuclease	
37	 53.96       38153..39781    	 +	542	33862310	-	PMT0037	-	SNF2 related domain:DEAD/DEAH box helicase:Helicase C-termina...	
38	 46.98       40109..40555    	 -	148	33862311	-	PMT0038	-	possible Penicillin amidase	
39	 54.26       40618..41133    	 -	171	33862312	-	PMT0039	-	conserved hypothetical protein	
40	 47.95       41162..41551    	 +	129	33862313	-	PMT0040	-	possible methyl-accepting chemotaxis protein [Bacillus ...	
41	 50.65       41589..41819    	 +	76	33862314	-	PMT0041	-	conserved hypothetical protein	
42	 48.89       41954..42178    	 +	74	33862315	-	PMT0042	-	conserved hypothetical protein	
43	 52.92       42402..43550    	 -	382	33862316	DHSS	PMT0043	-	soluble hydrogenase small subunit	
44	 55.12       43635..44786    	 +	383	33862317	cbiD	PMT0044	-	CbiD protein	
45	 49.91       44827..46413    	 +	528	33862318	guaA	PMT0045	-	Glutamine amidotransferase class-I:GMP synthase	
46	 51.63       46883..47494    	 +	203	33862319	-	PMT0046	-	conserved hypothetical protein	
47	 53.73       47510..47911    	 +	133	33862320	-	PMT0047	-	conserved hypothetical protein	
48	 53.58       47917..49719    	 +	600	33862321	-	PMT0048	-	Putative penicillin-binding protein	
49	 55.45       49755..50984    	 -	409	33862322	sqdX	PMT0049	-	SqdX	
50	 54.05       50930..52126    	 -	398	33862323	sqdB	PMT0050	-	sulfolipid (UDP-sulfoquinovose) biosynthesis protein	
51	 54.76       52186..52353    	 -	55	33862324	-	PMT0051	-	similar to high light inducible protein	
52	 55.84       52427..53359    	 -	310	33862325	thiG	PMT0052	-	thiamin biosynthesis protein	
53	 52.29       53400..53879    	 +	159	33862326	-	PMT0053	-	conserved hypothetical protein	
54	 50.71       53847..54410    	 -	187	33862327	-	PMT0054	-	putative photosystem I assembly related protein Ycf37	
55	 54.02       55427..55774    	 -	115	33862328	rpl20	PMT0055	-	50S ribosomal protein L20	
56	 52.53       55846..56043    	 -	65	33862329	rpl35	PMT0056	-	50S ribosomal protein L35	
57	 55.43       56107..57717    	 +	536	33862330	-	PMT0057	-	possible amidase enhancer	
58	 53.38       57742..59073    	 +	443	33862331	-	PMT0058	-	Glycosyl transferase, family 2	
59	 55.68       59078..60898    	 -	606	33862332	dnaX	PMT0059	-	DNA polymerase, gamma and tau subunits	
60	 53.80       60922..61605    	 -	227	33862333	-	PMT0060	-	conserved hypothetical protein	
61	 54.16       61610..62968    	 -	452	33862334	clpX	PMT0061	-	putative Clp protease ATP-binding subunit, ClpX	
62	 54.22       63057..63731    	 -	224	33862335	clpP2	PMT0062	-	Clp protease proteolytic subunit	
63	 51.94       63778..65217    	 -	479	33862336	-	PMT0063	-	FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)	
64	 54.66       65391..66323    	 +	310	33862337	asd	PMT0064	-	aspartate Semialdehyde dehydrogenase	
65	 55.67       66420..67328    	 +	302	33862338	dapA	PMT0065	-	Dihydrodipicolinate synthetase	
66	 50.15       67429..69432    	 +	667	33862339	-	PMT0066	-	conserved hypothetical protein	
67	 46.76 -1    69418..70527    	 -	369	33862340	-	PMT0067	-	possible liver stage antigen LSA-1-malaria parasite ...	
68	 53.88       70488..71519    	 -	343	33862341	-	PMT0068	-	conserved hypothetical protein	
69	 56.24       71603..72379    	 +	258	33862342	ycf23	PMT0069	-	conserved hypothetical protein	
70	 51.67       72424..72843    	 +	139	33862343	-	PMT0070	-	conserved hypothetical protein	
71	 46.81 -1    72948..74987    	 +	679	33862344	uvrB	PMT0071	-	DEAD/DEAH box helicase:Helicase C-terminal domain:UvrB/uvrC m...	
72	 47.92       75337..75576    	 +	79	33862345	-	PMT0072	-	possible FAD binding domain	
73	 57.10 +1    75605..77392    	 -	595	33862346	lysC	PMT0073	-	Aspartate kinase	
74	 56.87 +1    77441..78451    	 -	336	33862347	-	PMT0074	-	conserved hypothetical protein	
75	 57.69 +1    78517..79140    	 +	207	33862348	cobH	PMT0075	-	putative Precorrin-8X methylmutase CobH	
76	 48.72       79135..80310    	 -	391	33862349	-	PMT0076	-	possible transporter component	
77	 53.72       80312..83239    	 -	975	33862350	-	PMT0077	-	ABC transporter, multi drug efflux family	
78	 51.44       83236..83997    	 -	253	33862351	-	PMT0078	-	Conserved hypothetical protein	
79	 56.72 +1    84051..86834    	 -	927	33862352	mutS	PMT0079	-	putative DNA mismatch repair protein	
80	 46.27 -1    86991..87191    	 +	66	33862353	psbZ	PMT0080	-	possible Photosystem II reaction center Z protein (PsbZ)	
81	 51.81       87244..87741    	 +	165	33862354	ribH	PMT0081	-	Putative 6,7-dimethyl-8-ribityllumazine synthase or riboflavin synthase beta chain	
82	 54.41       87907..88371    	 -	154	33862355	-	PMT0082	-	unnamed protein product	
83	 52.62       88626..91472    	 +	948	33862356	secA	PMT0083	-	Preprotein translocase SecA subunit	
84	 47.73       91775..91906    	 +	43	33862357	-	PMT0084	-	putative glucose-1-phosphate thymidylyltransferase	
85	 43.04 -1    91963..92745    	 +	260	33862358	-	PMT0085	-	glycosyltransferase	
86	 43.58 -1    93599..94525    	 +	308	33862359	-	PMT0086	-	Possible UDP-glucose-4-epimerase	
87	 40.05 -2    94522..96738    	 -	738	33862360	-	PMT0087	-	glycosyltransferase	
88	 41.64 -2    96948..98018    	 +	356	33862361	-	PMT0088	-	possible protease	
89	 39.55 -2    98011..99216    	 +	401	33862362	-	PMT0089	-	possible acyltransferase	
90	 51.19       99535..101931   	 +	798	33862363	-	PMT0090	-	hypothetical protein	
91	 36.74 -2   102059..104140   	 +	693	33862364	-	PMT0091	-	conserved hypothetical protein	
92	 37.87 -2   104143..104892   	 +	249	33862365	-	PMT0092	-	hypothetical protein	
93	 39.58 -2   104892..107837   	 +	981	33862366	-	PMT0093	-	multidrug efflux family ABC transporter	
94	 39.90 -2   107834..109219   	 +	461	33862367	-	PMT0094	-	possible transporter for efflux	
95	 40.39 -2   109248..110267   	 +	339	33862368	-	PMT0095	-	capsular polysaccharide biosynthesis protein	
96	 40.10 -2   110264..111430   	 +	388	33862369	-	PMT0096	-	capsular polysaccharide biosynthesis protein	
97	 41.58 -2   111427..112323   	 +	298	33862370	-	PMT0097	-	conserved hypothetical protein	
98	 41.67 -2   112330..113577   	 +	415	33862371	-	PMT0098	-	LPS biosynthesis protein	
99	 42.09 -2   113580..114230   	 +	216	33862372	HisH	PMT0099	-	imidazoleglycerol-phosphate synthase, glutamine amidotransferase subunit	
100	 43.64 -1   114224..115009   	 +	261	33862373	hisF	PMT0100	-	imidazoleglycerol-phosphate synthase, cyclase subunit	

 
 51.74 MEAN 
 
 4.82  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.