IslandPath Analysis: Prochlorococcus marinus CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.01   STD DEV: 4.00

Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 0..1751080

 %G+C  SD 82 proteins
 30.92       Location		Strand	Length	PID	Gene	Synonym	Code	COG	Product

 30.52 -1
1	 33.62         174..1331     	 +	385	33239453	dnaN	Pro0001	-	DNA polymerase III beta subunit	
2	 33.47        1333..2079     	 +	248	33239454	-	Pro0002	-	RNA metabolism-related protein	
3	 31.52 -1     2082..4487     	 +	801	33239455	purL	Pro0003	-	Phosphoribosylformylglycinamidine (FGAM) synthase	
4	 29.79 -1     4530..5987     	 +	485	33239456	purF	Pro0004	-	Glutamine phosphoribosylpyrophosphate amidotransferase	
5	 33.23        5992..8478     	 -	828	33239457	gyrA	Pro0005	-	Type IIA topoisomerase, A subunit, ParC	
6	 36.27        8558..9433     	 -	291	33239458	-	Pro0006	-	Secreted TPR repeats protein	
7	 31.45 -1     9433..10395    	 -	320	33239459	-	Pro0007	-	Uncharacterized Fe-S protein	
8	 34.88       10521..11270    	 +	249	33239460	-	Pro0008	-	Uncharacterized conserved membrane protein	
9	 37.23       11292..11927    	 +	211	33239461	nusB	Pro0009	-	Transcription termination factor, NusB	
10	 34.13       11966..13261    	 +	431	33239462	ftsY	Pro0010	-	Signal recognition particle GTPase, FtsY	
11	 60.08 +2    13310..14719    	 +	469	33239463	rsbU	Pro0011	-	Serine phosphatase RsbU	
12	 34.83       14770..16158    	 +	462	33239464	argH	Pro0012	-	Argininosuccinate lyase	
13	 37.52       16279..17037    	 +	252	33239465	-	Pro0013	-	RNA-binding protein, RRM domain	
14	 36.35       17049..18050    	 -	333	33239466	-	Pro0014	-	tRNA-dihydrouridine synthase	
15	 40.19       18102..18602    	 +	166	33239467	-	Pro0015	-	Conserved domain	
16	 31.17 -1    18707..19435    	 +	242	33239468	grpE	Pro0016	-	Molecular chaperone GrpE, heat shock protein	
17	 30.43 -1    19481..20617    	 +	378	33239469	dnaJ	Pro0017	-	DnaJ-class molecular chaperone	
18	 40.80       20617..20847    	 +	76	33239470	sirA	Pro0018	-	Predicted redox protein	
19	 36.72       20834..21763    	 +	309	33239471	-	Pro0019	-	Predicted GTPase	
20	 31.29 -1    21747..22094    	 -	115	33239472	-	Pro0020	-	Uncharacterized protein	
21	 38.71       22128..23012    	 -	294	33239473	murB	Pro0021	-	UDP-N-acetylmuramate dehydrogenase	
22	 38.52       23017..24435    	 -	472	33239474	murC	Pro0022	-	UDP-N-acetylmuramate-alanine ligase	
23	 35.65       24618..25640    	 +	340	33239475	gap2	Pro0023	-	Glyceraldehyde-3-phosphate dehydrogenase	
24	 39.22       25676..26677    	 -	333	33239476	thiL	Pro0024	-	Thiamine monophosphate kinase	
25	 40.70       26670..27746    	 -	358	33239477	ppiB	Pro0025	-	Peptidyl-prolyl cis-trans isomerase	
26	 37.90       27810..28370    	 +	186	33239478	efp	Pro0026	-	Translation elongation factor P	
27	 34.69       28376..28891    	 +	171	33239479	accB	Pro0027	-	Biotin carboxyl carrier protein	
28	 38.37       28895..29923    	 -	342	33239480	pdxA	Pro0028	-	Pyridoxal phosphate biosynthesis protein	
29	 35.59       29973..30119    	 +	48	33239481	-	Pro0029	-	Predicted protein	
30	 36.39       30137..31030    	 -	297	33239482	wcaG	Pro0030	-	NAD dependent epimerase/dehydratase	
31	 36.74       31062..31283    	 +	73	33239483	-	Pro0031	-	Predicted protein	
32	 32.26 -1    31287..31679    	 -	130	33239484	mcrA	Pro0032	-	McrA/HNH family nuclease	
33	 36.81       31805..32068    	 -	87	33239485	-	Pro0033	-	Predicted membrane protein	
34	 34.55       32121..32492    	 +	123	33239486	-	Pro0034	-	Predicted protein	
35	 35.25       32863..33150    	 +	95	33239487	-	Pro0035	-	Predicted protein	
36	 37.74       33189..34343    	 -	384	33239488	-	Pro0036	-	Serine-pyruvate/aspartate aminotransferase related enzyme	
37	 39.38       34418..35563    	 +	381	33239489	cbiD	Pro0037	-	Cobalamin biosynthesis protein CbiD	
38	 32.78 -1    35617..37203    	 +	528	33239490	guaA	Pro0038	-	GMP synthase	
39	 36.13       38158..38769    	 +	203	33239491	-	Pro0039	-	Predicted membrane protein	
40	 34.19       38779..39138    	 +	119	33239492	-	Pro0040	-	Predicted protein	
41	 39.70       39169..40956    	 +	595	33239493	ftsI	Pro0041	-	Cell division protein FtsI/penicillin-binding protein 2	
42	 36.80       40976..41209    	 -	77	33239494	-	Pro0042	-	Predicted protein	
43	 38.30       41413..41946    	 -	177	33239495	-	Pro0043	-	Predicted flavoprotein	
44	 35.63       41993..43837    	 -	614	33239496	dfa3	Pro0044	-	Diflavin flavoprotein	
45	 36.88       43837..45609    	 -	590	33239497	dfa1	Pro0045	-	Diflavin flavoprotein	
46	 38.86       45725..46594    	 -	289	33239498	-	Pro0046	-	Uncharacterized SWIM-like Zn-finger-containing conserved protein	
47	 37.65       46600..49788    	 -	1062	33239499	hepA	Pro0047	-	Superfamily II DNA/RNA helicases, SNF2 family	
48	 39.57       49984..52662    	 +	892	33239500	alaS	Pro0048	-	Alanyl-tRNA synthetase	
49	 38.81       52665..54611    	 -	648	33239501	speA	Pro0049	-	Arginine decarboxylase	
50	 36.04       54704..55216    	 +	170	33239502	ndk	Pro0050	-	Nucleoside diphosphate kinase	
51	 30.17 -1    55259..56371    	 -	370	33239503	dadA	Pro0051	-	Glycine/D-amino acid oxidase family enzyme	
52	 38.08       56478..57956    	 +	492	33239504	gatB	Pro0052	-	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)	
53	 42.34 +1    57964..58596    	 -	210	33239505	coaE	Pro0053	-	Dephospho-CoA kinase	
54	 32.46 -1    58642..59883    	 +	413	33239506	argJ	Pro0054	-	N-acetylglutamate synthase	
55	 31.05 -1    60286..60918    	 +	210	33239507	hupE	Pro0055	-	Hydrogenase accessory membrane protein	
56	 31.25 -1    61067..62899    	 -	610	33239508	mdlB	Pro0056	-	ABC-type multidrug transport system ATPase and permease components	
57	 30.21 -1    63339..64562    	 +	407	33239509	rfaG	Pro0057	-	Glycosyltransferase	
58	 34.27       64567..66531    	 -	654	33239510	asnB	Pro0058	-	Asparagine synthetase	
59	 31.32 -1    66592..68190    	 +	532	33239511	arnT	Pro0059	-	Glycosyltransferase of PMT family	
60	 29.96 -1    68269..69663    	 +	464	33239512	wcaA	Pro0060	-	Glycosyltransferase	
61	 38.83       69664..70605    	 +	313	33239513	-	Pro0061	-	Uncharacterized conserved membrane protein	
62	 32.15 -1    70715..73054    	 +	779	33239514	arnT	Pro0062	-	Glycosyltransferase of PMT family	
63	 33.25       73141..74268    	 +	375	33239515	gmd	Pro0063	-	GDP-D-mannose dehydratase	
64	 33.85       74274..75287    	 +	337	33239516	wcaG	Pro0064	-	NAD dependent epimerase/dehydratase	
65	 39.78       75660..76808    	 +	382	33239517	-	Pro0065	-	Predicted N6-adenine-specific DNA methylase	
66	 43.94 +1    76805..77191    	 -	128	33239518	-	Pro0066	-	Predicted membrane protein	
67	 26.57 -2    77192..77656    	 -	154	33239519	-	Pro0067	-	Predicted protein	
68	 40.42       77901..78032    	 +	43	33239520	-	Pro0068	-	Predicted protein	
69	 36.88       78177..78383    	 +	68	33239521	-	Pro0069	-	Predicted protein	
70	 37.24       78441..78821    	 +	126	33239522	-	Pro0070	-	Uncharacterized conserved protein	
71	 35.96       78939..82493    	 +	1184	33239523	smc	Pro0071	-	Chromosome segregation ATPase	
72	 40.81       82558..83631    	 +	357	33239524	-	Pro0072	-	Protein implicated in RNA metabolism (PRC-barrel domain)	
73	 34.89       83662..84957    	 -	431	33239525	-	Pro0073	-	cyanobacteria-specific protein related to lipid A disaccharide synthetase	
74	 47.62 +2    85161..86510    	 +	449	33239526	accC	Pro0074	-	Biotin carboxylase	
75	 40.79       86523..86843    	 -	106	33239527	-	Pro0075	-	YGGT family membrane protein	
76	 38.96       86930..87097    	 +	55	33239528	psbX	Pro0076	-	Photosystem II protein X PsbX	
77	 33.03       87184..88242    	 +	352	33239529	-	Pro0077	-	Uncharacterized protein	
78	 36.26       88280..88528    	 -	82	33239530	hli5	Pro0078	-	High light inducible protein hli5	
79	 36.76       88537..90525    	 -	662	33239531	-	Pro0079	-	ABC-type uncharacterized transport system permease and ATPase component	
80	 33.84       90732..91073    	 -	113	33239532	hit	Pro0080	-	HIT family hydrolase	
81	 32.93 -1    91268..91879    	 -	203	33239533	def	Pro0081	-	N-formylmethionyl-tRNA deformylase	
82	 29.80 -1    91942..93900    	 +	652	33239534	DAP2	Pro0082	-	Dipeptidyl aminopeptidase family enzyme	
83	 32.58 -1    93897..95150    	 -	417	33239535	csdB	Pro0083	-	Selenocysteine lyase	
84	 33.89       95159..96376    	 -	405	33239536	sufB	Pro0084	-	ABC-type transport system involved in Fe-S cluster assembly permease component	
85	 36.77       96384..97175    	 -	263	33239537	sufC	Pro0085	-	ABC-type transport system involved in Fe-S cluster assembly ATPase component	
86	 39.16       97172..98614    	 -	480	33239538	sufB	Pro0086	-	ABC-type transport system involved in Fe-S cluster assembly permease component	
87	 40.94       98697..99074    	 +	125	33239539	-	Pro0087	-	Predicted protein	
88	 39.06       99371..100468   	 +	365	33239540	-	Pro0088	-	Uncharacterized conserved protein	
89	 38.93      100490..100660   	 +	56	33239541	-	Pro0089	-	Predicted membrane protein	
90	 31.35 -1   100718..102376   	 +	552	33239542	pgm	Pro0090	-	Phosphoglucomutase	
91	 35.26      102410..103750   	 +	446	33239543	mGS1	Pro0091	-	ATPase	
92	 38.46      103816..104472   	 -	218	33239544	-	Pro0092	-	4'-phosphopantetheinyl transferase related protein	
93	 36.86      104471..104938   	 +	155	33239545	ccp	Pro0093	-	Peroxiredoxin	
94	 35.78      104886..105626   	 -	246	33239546	-	Pro0094	-	Predicted transcriptional regulator	
95	 39.70      105629..106393   	 -	254	33239547	cysH	Pro0095	-	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)	
96	 37.46      106440..107624   	 +	394	33239548	ndh	Pro0096	-	NADH dehydrogenase, FAD-containing subunit	
97	 40.71      107726..109546   	 +	606	33239549	citT	Pro0097	-	Di/tricarboxylate transporter	
98	 38.01      109600..111003   	 +	467	33239550	trkG	Pro0098	-	Trk-type K+ transport system, membrane component	
99	 42.67 +1   111000..111731   	 +	243	33239551	trkA	Pro0099	-	K+ transport system, NAD-binding component	
100	 39.34      111732..112865   	 +	377	33239552	-	Pro0100	-	Predicted molecular chaperone	

 
 37.01 MEAN 
 
 4.00  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.